@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12229: (2016-06-19 )
METKKEEYETKGYDTSIVYEFNEYPDARSGRCDNCDYTLFKSSVKGGKFLRECRRCGMKKNI
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........---40...-.-.-.------------.---------.----.50........60.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MET
K
K
E
E
YETKGYD
T
S
I
V
Y
EFNEYPDARSGRCDNC
D
Y
T
L
---
F
-KSS-V-K-G------------
G
---------
K
----
F
L
R
E
C
R
RCGMKKNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
71.95
29%
-35
- C7 -
5AUN
3
HYPA_THEKO
A:
[69-116]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
F
K
C
R
N
C
N
Y
E
----
W
-
K
L
K
-
E
V
K
-
D
KFD
E
R
I
K
E
D
I
H
F
I
---------
P
EVVH
A
F
L
A
C
P
K
C
G
S
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
70.76
22%
-92
- C6 -
5A1F
14
KDM5B_HUMAN
A:
[1-458]
---------------------------------------------------------------------------------------------------------------------------------------------------------SM
F
L
P
P
P
E
C
P
V
F
E
P
S
WEEFAD
P
F
A
F
I
H
K
I
R
P
I
A
E
Q
T
G
I
C
K
V
R
P
PPDWQP
P
F
A
C
D
VDK
L
H
F
T
P
R
I
Q
R
L
N
E
L
E
A
Q
T
R
VRDYT
L
R
T
F
G
E
M
A
D
A
F
K
S
D
Y
F
NMPVHMVP
T
E
L
V
E
K
E
F
W
R
L
V
S
TIEED
V
T
V
E
Y
G
A
D
I
A
SKEFGSG
F
P
V
R
DS
P
E
E
E
E
Y
L
D
SGWNLNNMPVMEQSVLAHITADICGMK
L
P
W
L
Y
V
G
M
CFSSF
C
W
H
I
E
DHW
S
Y
S
I
N
Y
L
HW
G
E
P
K
T
W
Y
G
V
P
GYA
A
E
Q
L
E
N
V
M
K
K
L
APELFVSQPDLL
H
Q
L
V
T
I
M
N
P
N
T
L
M
T
H
EV
P
V
Y
R
T
N
Q
C
AG
E
F
V
I
T
F
P
R
A
Y
H
S
G
F
N
Q
G
F
N
F
A
E
A
V
N
F
C
T
VDW
L
P
L
G
R
Q
C
V
E
H
Y
R
L
L
HRYCVFS
H
D
E
M
I
C
K
M
A
S
K
ADVLD
V
V
V
A
S
T
V
Q
K
D
M
A
I
M
I
E
D
E
K
A
L
R
E
T
V
R
K
L
G
V
I
D
S
E
R
M
D
F
E
L
L
P
D
D
E
R
-
Q
C
V
K
C
K
T
T
C
---
F
-
M
S
A
-
I
-
S
-
C
------------
S
CKPG
L
L
V
C
L
H
----
H
V
K
E
L
C
S
C
P
P
Y
K
Y
K
LRYRYT
L
D
D
L
Y
P
M
M
N
A
L
K
L
R
A
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
68.27
35%
-209
- C11 -
3BH6
1
XRP2_HUMAN
B:
[74-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
V
T
I
D
D
C
T
N
C
--
I
I
---
F
-
L
G
P
-
V
-
K
-
G
------------
S
---------
V
----
F
F
R
N
C
R
D
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
64.06
35%
-197
- C11 -
3BH7
1
XRP2_HUMAN
B:
[74-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
V
T
I
D
D
C
T
N
C
--
I
I
---
F
-
L
G
P
-
V
-
K
-
G
------------
S
---------
V
----
F
F
R
N
C
R
D
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
63.51
27%
-92
* C7 *
4NL4
3
?
H:
[18-747]
--------------------------------------------------------------------------------------------------SVAHVALPVPLPRTFDYLLPEGMAVKAGCRVRVPFGKQERIGIVAAVSERSELPLDELKPVAEALDDEPVFSTTVWRLLMWAAEYYHHPIGDVLFHALPVMLRQGKPASATPLWYWFATEQGQVVDLNGLKRSRKQQQALAALRQGKIWRHQVGELEFNEAALQALRGKGLAELACEATDWRSAYSVAGERLRLNTEQATAVGAIHSAADRFSAWLLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQTIARFRQRFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKDLGVIVIDEEHDSSYKQQEGWRYHARDLAVWRAHSEQIPIILGSATPALETLHNVRQGKYRQLTLSKPAQQHVLDLKGQPLQAGLSPALISRMRQHLQADNQVILF
L
N
R
R
-------
G
F
A
P
A
L
L
C
-
H
D
C
G
W
I
A
E
C
P
R
C
D
S
-
Y
Y
T
L
---
H
-
Q
A
Q
----------------------------
H
----
H
L
R
-
C
H
H
C
D
S
Q
R
P
I
PRQCPSCGSTHLVPVGIGTEQLEQALAPLFPEVPISRIDRHLAAVHRGGARILIGTQMLAKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQTLLYKGYDAFAEQALAERQTMQLPPWTSHVLIRAEDHNNQQAPLFLQQLRNLLQASPLADEKLWVLGPVPALRWQILLQHPSRVRLQHIVSGTLALINTLPEAWVLDVDPIEG
1
PsiBlast_PDB
62.52
35%
-199
* C11 *
2BX6
-
XRP2_HUMAN
A:
[72-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
I
F
D
H
S
A
T
V
T
I
D
D
C
T
N
C
--
I
I
---
F
-
L
G
P
-
V
-
K
-
G
------------
S
---------
V
----
F
F
R
N
C
R
D
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
52.79
25%
-133
- C1 -
2M8V
-
?
A:
[1-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
R
G
W
I
K
L
K
D
C
P
N
---
V
-
I
S
S
-
I
-
C
-
A
------------
G
---------
T
----
I
I
T
A
C
K
N
C
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
52.24
25%
-124
* C9 *
3NA7
3
?
A:
[1-237]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGS
N
T
H
L
K
Q
L
I
E
I
S
H
L
D
K
E
I
D
S
L
E
P
L
I
R
E
K
R
K
D
L
D
K
A
L
N
D
K
E
A
K
N
K
A
I
L
N
L
E
E
E
K
L
A
L
K
L
Q
V
S
K
N
E
Q
T
L
Q
D
T
N
A
K
I
A
S
I
Q
K
K
M
S
E
IKSERE
L
R
S
L
N
I
E
E
D
I
A
K
E
R
S
N
Q
A
N
R
E
I
E
N
L
Q
N
E
I
K
R
K
S
E
K
Q
E
D
L
K
K
E
M
L
E
L
E
K
L
A
L
E
L
E
S
L
V
E
N
E
V
K
N
I
K
E
T
Q
Q
I
I
F
K
K
K
E
D
L
V
E
K
TE
P
K
I
Y
S
F
Y
E
R
I
R
R
W
A
K
N
T
S
I
V
T
-------
I
K
K
Q
A
C
G
G
C
F
I
R
L
N
D
K
I
-
Y
T
E
-
V
-
L
-
T
------------
S
---------
G
----
D
M
I
T
C
P
Y
C
G
---
R
I
L
Y
A
EGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
51.46
18%
23
- C7 -
2GAI
-
TOP1_THEMA
A:
[7-601]
K
Y
I
V
V
ES
P
A
K
A
K
T
I
K
S
I
L
GNE
Y
E
V
F
A
SMGHIIDLPKSKFGVDLEKDF
E
P
E
F
A
VIKGK
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
L
L
I
ASDMD
R
E
G
E
A
I
A
W
H
I
A
R
V
T
NTLGRKN
R
I
V
F
SEIT
P
R
V
I
R
E
A
V
K
N
PREID
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
FK
S
N
L
S
AG
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
F
DG
L
T
A
E
I
DVK
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
ID
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
P
P
EPFK
T
S
T
L
Q
Q
E
A
Y
S
K
LGFS
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
KD
G
H
I
A
F
I
TYMRTDSTRVS
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
FGEEYVGAHEAIRPTNVFMTPEEAGKYLN
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
R
T
KDGK
Y
R
F
K
G
T
V
L
K
K
IFDGYEKVW
K
T
E
R
NTGEFPFEEG
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
K
P
KPRYT
E
G
S
L
V
K
E
M
E
R
L
GIGRPST
Y
A
S
T
I
K
L
L
L
N
R
GY
I
K
K
I
RG
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
KYSDVVS
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
GKKT
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
F
D
R
N
D
-----
R
I
V
V
D
F
P
T
N
Q
K
C
S
C
G
K
E
M
---
R
-
L
S
F
-
G
-
K
-
Y
------------
G
---------
F
----
Y
L
K
-
C
E
-
C
G
K
T
R
S
V
K
NDE
I
A
V
I
D
DGKIFL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
51.25
21%
-139
- C7 -
1PFT
1
TF2B_PYRFU
A:
[5-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
V
C
P
A
C
E
S
A
E
---
L
-
I
Y
D
-
P
-
E
-
R
------------
G
---------
E
----
I
--
V
C
A
K
C
G
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.83
28%
-118
- C7 -
5FJ8
1
RPC10_YEAST
I:
[4-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
P
S
C
N
N
M
L
---
L
-
I
T
S
-
G
-
D
-
S
------------
G
---------
V
----
Y
T
L
A
C
R
S
C
P
Y
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
46.84
25%
-44
- C7 -
5AF6
1
ZRAN1_HUMAN
F:
[7-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
K
W
A
C
E
Y
C
T
Y
E
N
---
W
-
P
S
A
-
I
-
K
---------------------------------
C
T
M
C
R
A
Q
R
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.91
29%
-61
- C7 -
3WWL
1
LYSW_THET8
A:
[3-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
C
P
E
C
G
A
E
L
---
R
-
L
E
N
-
P
-
E
--------------
L
---------
G
----
E
L
V
V
C
E
D
C
G
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
45.68
19%
-71
- C7 -
5FMF
-
T2EA_YEAST
R:
[119-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
G
Y
M
C
P
I
C
L
T
K
Y
---
T
-
Q
L
E
-
A
-
V
-
Q
LLNFDR------
T
---------
E
----
F
L
--
C
S
L
C
D
E
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
45.46
31%
-83
- C7 -
1TWF
1
RPB9_YEAST
I:
[6-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
R
D
C
N
N
M
L
---
Y
-
P
R
E
-
D
-
K
E
N
------------
N
---------
R
----
L
L
F
E
C
R
T
C
S
Y
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
43.47
28%
-54
- C7 -
5FLM
1
RPB9_BOVIN
I:
[16-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
Q
E
C
N
N
M
L
---
Y
P
K
E
D
-
K
-
E
-
N
------------
R
---------
I
----
L
L
Y
A
C
R
N
C
D
Y
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
42.31
18%
1
- C7 -
2D74
1
IF2B_PYRFU
B:
[103-136]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
V
I
C
P
V
C
G
S
P
D
---
T
-
K
I
I
-
K
-
R
-
D
------------
R
---------
F
----
H
F
L
K
C
E
A
C
G
A
E
T
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.70
21%
-127
* C10 *
1DL6
1
TF2B_HUMAN
A:
[10-38]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
V
T
C
P
N
H
P
D
A
I
---
L
-
V
E
D
-
Y
-
R
-
A
------------
G
---------
D
----
M
--
I
C
P
E
C
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
41.42
28%
-43
- C7 -
3QT1
1
RPB9_YEAST
I:
[26-55]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
R
D
C
N
N
M
L
---
Y
-
P
R
E
D
K
-
E
-
N
------------
N
---------
R
----
L
L
F
E
C
R
T
C
S
Y
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.77
31%
-103
- C7 -
2LK0
1
A:
[7-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
W
L
C
N
K
C
C
L
N
N
---
F
-
R
K
R
-
L
----------------------------------
K
C
F
R
C
G
A
D
K
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------