@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12820: (2016-06-20 )
MERAFQNRCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEYKRKKA
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10-.........20........-30....--.-...40.-.......50.....------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
R
A
F
Q
-NRCE--PRAA
K
P
F
K
I
L
K
KRSTTS
V
A
-
S
Y
QVSP--
H
-
T
A
R
I
F
K
-
E
N
E
R
L
I
D
E
Y
K
RKKA------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
87.02
100%
-172
- C4 -
3O6Q
-
SP2SB_BACSU
B:
[9-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
--
P
R
A
A
K
P
F
K
I
L
K
K
R
S
T
T
S
V
A
-
S
Y
Q
V
S
P
--
H
-
T
A
R
I
F
K
-
E
N
E
R
L
I
D
E
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
87.02
100%
-172
- C4 -
3O6Q
-
SP2SB_BACSU
B:
[9-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
--
P
R
A
A
K
P
F
K
I
L
K
K
R
S
T
T
S
V
A
-
S
Y
Q
V
S
P
--
H
-
T
A
R
I
F
K
-
E
N
E
R
L
I
D
E
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.02
100%
-172
- C4 -
3O6Q
-
SP2SB_BACSU
B:
[9-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
--
P
R
A
A
K
P
F
K
I
L
K
K
R
S
T
T
S
V
A
-
S
Y
Q
V
S
P
--
H
-
T
A
R
I
F
K
-
E
N
E
R
L
I
D
E
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
51.80
12%
-174
- C4 -
1H97
2
GLB_PAREP
A:
[1-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLT
K
H
E
Q
D
I
L
L
K
E
L
G
PHVDT
P
A
H
I
V
E
T
G
L
G
A
Y
H
A
L
F
T
-
A
H
----
P
Q
Y
I
S
H
F
S
R
L
E
G
H
T
I
E
N
V
M
Q
S
E
G
I
K
H
--
Y
-
A
R
T
L
T
E
-
A
I
V
H
M
L
K
E
I
S
N
D
A
E
V
K
K
I
A
A
Q
Y
G
K
D
H
T
SRKVT
K
D
E
F
M
S
G
E
P
I
F
T
K
Y
F
Q
N
L
VKD
A
E
G
K
A
A
V
E
K
F
L
K
H
V
F
P
M
M
A
A
E
I-----------------------------------------------------------------------------------------------------------
15
Fugue
50.55
13%
-121
- C4 -
1YHU
-
?
D:
[1-149]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASCT
T
E
D
R
R
E
M
Q
L
M
W
G
N
V
WSAQFT
G
R
R
I
A
I
A
Q
A
V
F
K
D
L
F
A
-
N
V
-------
P
D
A
V
G
L
F
G
A
V
K
G
D
E
V
N
-
S
N
E
F
K
A
--
H
-
C
I
R
V
V
N
-
G
L
D
S
S
I
G
L
L
S
D
P
A
T
L
N
E
Q
L
S
H
L
A
T
Q
H
K
A
RSGVT
K
G
G
F
S
A
I
A
Q
S
F
L
R
V
MPQVASCFN
P
D
A
W
S
R
C
F
N
R
I
T
T
G
M
T
EPLPA---------------------------------------------------------------------------------------------------------
8
HHSearch
49.50
23%
-142
- C4 -
2CR7
-
SIN3B_MOUSE
A:
[36-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
M
K
E
F
K
S
Q
S
I
D
-
T
P
G
V
I
R
--
R
-
V
S
Q
L
F
H
-
E
H
P
D
L
I
V
G
F
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
49.16
21%
-189
- C4 -
1MIW
-
CCA_GEOSE
A:
[169-187]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
A
L
A
P
--
D
-
T
E
Q
A
I
V
-
Q
N
A
P
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
46.28
11%
-95
- C- -
3L32
-
PHOSP_RABVR
A:
[90-133]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
F
Q
-
S
Y
L
D
--
N
V
G
V
Q
I
V
R
Q
M
R
S
------------
G
E
--
R
-
F
L
K
I
W
S
-
Q
T
V
E
E
I
V
S
Y
V
T
V
N
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
44.47
29%
-155
- C4 -
3CGX
-
?
A:
[210-230]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
R
R
S
--
S
-
T
Y
A
L
L
R
-
E
N
D
A
L
I
R
Q
Y
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
43.74
22%
-26
- C2 -
2XVO
1
CMR7B_SULSO
A:
[9-192]
---------------------------------------------------------------------------------------------------------------------------------------SQQ
V
E
W
V
F
I
P
V
I
K
D
V
T
Y
E
F
K
V
D
NNDNIT
E
L
Y
V
NG
N
K
L
G
P
ASSLEMDFYFDVDVSNNQVRKFNN
V
F
V
L
F
G
V
I
A
T
K
D
SN
K
I
K
M
Q
L
TLNPC
D
F
V
R
G
F
V
F
PSQDP
S
Q
L
N
N
I
F
A
S
N
N
K
V
--
S
V
S
E
K
A
F
A
I
L
N
R
K
K
E
G
A
V
S
-
S
---------
T
I
N
V
Y
I
-
T
Q
N
T
Y
T
G
N
T
K
I
E
K
I
Q
QNT
I
I
I
E
K
NTG
I
V
F
K
I
P
NDMLNIF
R
Y
S
T
T------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
41.83
16%
-36
- C4 -
2KCL
-
?
A:
[1-99]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDPED
P
F
T
R
Y
A
L
A
Q
E
H
L
K
-
H
D
N
A
--
S
R
A
L
A
L
F
E
E
L
V
E
T
D
P
D
Y
V
G
-
T
Y
Y
H
L
G
--
K
-
L
Y
E
R
L
D
-
R
T
D
D
A
I
D
T
Y
A
Q
G
I
E
V
A
R
E
EGT
Q
K
D
L
S
E
L
Q
D
A
K
L
K
A
E
G
L
EHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
37.81
8%
9
- C4 -
3SSC
2
MCRB_ECOLI
A:
[2-155]
----------------------------------------------------------------------------------------------------------------------------------------------ESI
Q
P
W
I
E
K
F
I
K
Q
A
Q
Q
QRSQSTKDYPTSYRN
L
R
V
K
L
S
FGYGNFTS
I
P
W
F
A
F
L
G
E
GQEAS
N
G
I
Y
P
V
I
L
YYKDFD
E
L
V
L
A
YGISDTNEPH
A
Q
W
Q
F
SSD
I
P
K
T
I
A
-
E
Y
F
Q
--
A
T
S
G
V
Y
P
K
K
Y
G
Q
S
Y
Y
A
C
S
Q
-
K
V
S
Q
G
I
--
D
-
Y
T
R
F
A
S
-
M
L
D
N
I
I
N
D
Y
K
L
I
F
N
S
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
30.45
12%
21
- C3 -
4OWT
-
INT3_HUMAN
A:
[33-498]
GGRL
L
L
S
T
SLDAKD
E
L
E
E
R
L
E
R
C
M
S
I
V
T
S
M
T
AGVS
E
R
E
A
N
D
A
L
N
A
Y
V
C
KG
L
P
Q
H
E
E
I
C
L
G
L
F
T
L
I
L
T
E
PAQ
A
Q
K
C
Y
R
D
L
A
L
V
SRDGM
N
I
V
L
N
K
I
N
Q
I
L
M
EKYLKLQ
D
T
C
R
T
Q
L
V
W
L
V
R
E
L
V
K
S
GVLG
A
D
G
V
C
M
T
F
M
K
Q
IAGGDVT
A
K
N
I
W
L
A
E
S
V
L
D
I
L
T
E
Q
R
E
W
V
L
K
S
S
I
L
I
A
M
A
V
Y
T
Y
L
R
L
I
V
D
HHGT
A
Q
L
Q
A
L
R
Q
K
E
V
D
F
C
I
S
L
L
R
E
R
F
M
E
C
L
MIG
R
D
L
V
R
L
L
Q
N
V
ARI
P
E
F
E
L
L
W
K
D
I
I
H
-
N
P
Q
A
LS
P
Q
F
T
G
I
L
Q
L
L
Q
S
R
T
S
R
K
F
L
-
A
C
R
L
T
P
--
D
M
E
T
K
L
L
F
M
T
S
R
V
R
F
G
Q
Q
K
R
Y
Q
D
W
F
Q
R
Q
YLSTPDS
Q
S
L
R
C
D
L
I
R
Y
I
C
GV
V
H
P
S
N
E
V
L
S
SDILP
R
W
A
I
I
G
W
L
L
T
T
CTS
N
V
A
A
S
N
A
K
L
A
L
F
Y
DWLFFSPDKDSIMNI
E
P
A
I
L
V
M
H
H
S
MKPH
P
A
I
T
A
T
L
L
D
F
M
C
R
I
I
P
N
FYPPL
E
G
H
V
R
Q
G
V
F
S
S
L
N
H
I
V
E
K
RVLAHL
A
P
L
F
D
NPKLD
K
E
L
R
A
M
L
R
E
K
FPEFCS
5
HHSearch
28.39
21%
-
- C4 -
3O6Q
-
SP2SA_BACSU
A:
[97-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--
D
-
T
R
E
I
L
E
-
E
N
N
E
M
L
H
M
Y
L
N
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.05
25%
31
- C5 -
3TGU
-
?
G:
[4-27]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
N
L
A
R
V
R
--
H
I
I
-
T
Y
S
L
S
P
--
F
-
E
Q
R
A
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
26.51
20%
-22
- C4 -
1SF8
-
HTPG_ECOLI
A:
[40-59]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
S
T
D
-
A
D
E
M
S
T
--
Q
-
M
A
K
L
F
A
-
A
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.69
10%
-
- C1 -
4FTG
1
E:
[8-17]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
K
I
P
-
K
F
T
F
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
19.65
26%
146
- C4 -
1OT0
1
RL1_HELPY
A:
[1-19]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
V
F
K
-
R
L
E
K
L
F
S
K
I
Q
N
W
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
19.65
26%
146
* C4 *
1P0J
1
RL1_HELPY
A:
[1-19]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
K
V
F
K
-
R
L
E
K
L
F
S
K
I
Q
N
W
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
18.70
13%
49
* C5 *
1WGR
-
A:
[52-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
L
V
E
C
H
P
HL
A
-
L
E
R
G
L
E
-
D
H
E
S
V
V
E
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------