@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu13170: (2016-06-20 )
MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAWRNFANKKEY
Atome Classification :
(23 SA)
.........10.......-.20....-....30.--.......40........50........60.......-----.70........80..------......90........100.......110.......120.......130-.......140.......150....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
N
H
E
T
F
L
K
R
A
V
T
L
ACEGV-NAGIGGP-
F
G
A
V
I
V
K--D
G
A
I
I
AEGQNNVTTSNDPTA
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A-----YQLD
D
C
I
L
YTSCE
P
C
------
P
M
C
L
G
A
I
Y
WAR
P
K
A
V
F
Y
AAEHTDAAEAGFD
D
S
F
I
Y
K
EIDKPAEER
T
I
P
F
-
Y
Q
V
T
L
T
EHL
S
P
F
Q
A
W
R
N
FANKKEY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
84.26
100%
-104
- C7 -
1WKQ
3
GUAD_BACSU
A:
[9-164]
M
N
H
E
T
F
L
K
R
A
V
T
L
A
C
E
G
V
-
N
A
G
I
G
G
P
-
F
G
A
V
I
V
K
--
D
G
A
I
I
A
E
G
Q
N
N
V
T
T
S
N
D
P
T
A
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A
-----
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
P
C
------
P
M
C
L
G
A
I
Y
W
A
R
P
K
A
V
F
Y
A
A
E
H
T
D
A
A
E
A
G
F
D
D
S
F
I
Y
K
E
I
D
K
P
A
E
E
R
T
I
P
F
-
Y
Q
V
T
L
T
E
H
L
S
P
F
Q
A
W
R
N
F
A
N
K
K
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
103
HHSearch
83.90
100%
-104
- C7 -
1WKQ
3
GUAD_BACSU
A:
[9-162]
M
N
H
E
T
F
L
K
R
A
V
T
L
A
C
E
G
V
-
N
A
G
I
G
G
P
-
F
G
A
V
I
V
K
--
D
G
A
I
I
A
E
G
Q
N
N
V
T
T
S
N
D
P
T
A
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A
-----
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
P
C
------
P
M
C
L
G
A
I
Y
W
A
R
P
K
A
V
F
Y
A
A
E
H
T
D
A
A
E
A
G
F
D
D
S
F
I
Y
K
E
I
D
K
P
A
E
E
R
T
I
P
F
-
Y
Q
V
T
L
T
E
H
L
S
P
F
Q
A
W
R
N
F
A
N
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
83.31
99%
-111
- C7 -
1TIY
1
GUAD_BACSU
A:
[2-156]
-
N
H
E
T
F
L
K
R
A
V
T
L
A
C
E
G
V
-
N
A
G
I
G
G
P
-
F
G
A
V
I
V
K
--
D
G
A
I
I
A
E
G
Q
N
N
V
T
T
S
N
D
P
T
A
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A
-----
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
P
C
------
P
M
C
L
G
A
I
Y
W
A
R
P
K
A
V
F
Y
A
A
E
H
T
D
A
A
E
A
G
F
D
D
S
F
I
Y
K
E
I
D
K
P
A
E
E
R
T
I
P
F
-
Y
Q
V
T
L
T
E
H
L
S
P
F
Q
A
W
R
N
F
A
N
K
K
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
82.37
100%
-100
- C7 -
1WKQ
3
GUAD_BACSU
B:
[10-164]
-
N
H
E
T
F
L
K
R
A
V
T
L
A
C
E
G
V
-
N
A
G
I
G
G
P
-
F
G
A
V
I
V
K
--
D
G
A
I
I
A
E
G
Q
N
N
V
T
T
S
N
D
P
T
A
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A
-----
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
P
C
------
P
M
C
L
G
A
I
Y
W
A
R
P
K
A
V
F
Y
A
A
E
H
T
D
A
A
E
A
G
F
D
D
S
F
I
Y
K
E
I
D
K
P
A
E
E
R
T
I
P
F
-
Y
Q
V
T
L
T
E
H
L
S
P
F
Q
A
W
R
N
F
A
N
K
K
E
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
81.20
99%
-108
- C7 -
1TIY
1
GUAD_BACSU
B:
[2-150]
-
N
H
E
T
F
L
K
R
A
V
T
L
A
C
E
G
V
-
N
A
G
I
G
G
P
-
F
G
A
V
I
V
K
--
D
G
A
I
I
A
E
G
Q
N
N
V
T
T
S
N
D
P
T
A
H
A
E
V
T
A
I
R
K
A
C
K
V
L
G
A
-----
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
P
C
------
P
M
C
L
G
A
I
Y
W
A
R
P
K
A
V
F
Y
A
A
E
H
T
D
A
A
E
A
G
F
D
D
S
F
I
Y
K
E
I
D
K
P
A
E
E
R
T
I
P
F
-
Y
Q
V
T
L
T
E
H
L
S
P
F
Q
A
W
R
N
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
106
HHSearch
67.84
28%
-115
- C7 -
2G84
3
?
A:
[27-185]
-
A
P
E
A
R
M
G
Y
V
L
E
L
V
R
A
N
I
--
A
A
D
G
G
P
-
F
A
A
A
V
F
E
RD
S
G
L
L
I
A
A
G
T
N
R
V
V
P
G
R
C
S
A
A
H
A
E
I
L
A
L
S
L
A
Q
A
K
L
D
T
HDLSA
D
G
L
P
A
C
E
L
V
T
S
A
E
P
C
------
V
M
C
F
G
A
V
I
W
S
G
V
R
S
L
V
C
A
A
R
S
D
D
V
E
A
I
G
F
D
E
G
P
R
P
E
N
W
M
G
G
L
E
A
R
G
I
T
V
T
T
G
L
L
R
D
A
A
C
A
L
L
R
E
Y
N
A
C
N
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
108
HHSearch
64.47
32%
-118
- C7 -
1WWR
1
TADA_AQUAE
A:
[22-168]
-
G
K
E
Y
F
L
K
V
A
L
R
E
A
K
R
A
F
--
E
K
G
E
V
P
-
V
G
A
I
I
V
K
--
E
G
E
I
I
S
K
A
H
N
S
V
E
E
L
K
D
P
T
A
H
A
E
M
L
A
I
K
E
A
C
R
R
L
N
T
-----
K
Y
L
E
G
C
E
L
Y
V
T
L
E
P
C
------
I
M
C
S
Y
A
L
V
L
S
R
I
E
K
V
I
F
S
A
L
D
K
K
H
G
G
V
V
S
V
F
N
----
I
L
D
E
P
T
L
N
H
R
V
K
W
E
Y
Y
P
-
L
E
E
A
S
E
L
L
S
E
F
F
K
K
L
R
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
104
HHSearch
64.04
30%
-120
- C7 -
1Z3A
1
TADA_ECOLI
A:
[8-155]
-
S
H
E
Y
W
M
R
H
A
L
T
L
A
K
R
A
W
--
D
E
R
E
V
P
-
V
G
A
V
L
V
H
--
N
N
R
V
I
G
E
G
W
N
R
P
I
G
R
H
D
P
T
A
H
A
E
I
M
A
L
R
Q
G
G
L
V
M
Q
N
-----
Y
R
L
I
D
A
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
A
M
I
H
S
R
I
G
R
V
V
F
G
A
R
D
A
K
T
G
A
A
G
S
L
M
----
D
V
L
H
H
P
G
M
N
H
R
V
E
I
T
E
G
I
L
A
D
E
C
A
A
L
L
S
D
F
F
R
M
R
R
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
125
Fugue
63.14
30%
-113
- C7 -
2B3Z
1
RIBD_BACSU
A:
[13-371]
-
M
E
E
Y
Y
M
K
L
A
L
D
L
A
K
Q
G
E
-
G
Q
T
E
S
N
P
L
V
G
A
V
V
V
K
--
D
G
Q
I
V
G
M
G
A
----
H
L
K
Y
G
E
A
H
A
E
V
H
A
I
H
M
A
-----
G
-----
A
H
A
E
G
A
D
I
Y
V
T
L
E
P
C
SHYGKT
P
P
C
A
E
L
I
I
N
S
G
I
K
R
V
F
V
A
M
R
D
P
N
P
L
V
A
G
--------
R
G
I
S
M
M
K
E
A
G
I
E
V
-
R
E
G
I
L
A
D
Q
A
E
R
L
N
--
E
K
F
L
H
F
M
R
T
GL
P
Y
V
T
L
K
A
A
A
S
LDGKIATSTGDSKWITS
E
A
A
R
Q
D
A
Q
Q
Y
R
K
T
H
Q
S
I
L
V
G
V
G
T
V
K
A
DNPSLTCRLPNVTKQ
P
V
R
V
I
L
D
TVLSIPEDAKVICDQI
A
P
T
W
I
F
T
T
ARAD
E
E
K
K
K
R
L
S
A
F
G
V
N
I
F
T
L
ETERIQ
I
P
D
V
L
K
I
L
A
E
E
GIMSVYVEGG
S
A
V
H
G
S
F
V
K
E
GCFQ
E
I
I
F
Y
F
A
P
K
L
I
G
G
THAPSL
I
S
G
EGFQSMKD
V
P
L
L
Q
FT
D
I
T
Q
I
GR
D
I
K
L
T
A
K
P
T
110
HHSearch
62.73
30%
-120
- C7 -
2B3J
5
TADA_STAAM
A:
[6-153]
-
N
D
I
Y
F
M
T
L
A
I
E
E
A
K
K
A
A
--
Q
L
G
E
V
P
-
I
G
A
I
I
T
K
--
D
D
E
V
I
A
R
A
H
N
L
R
E
T
L
Q
Q
P
T
A
H
A
E
H
I
A
I
E
R
A
A
K
V
L
G
S
-----
W
R
L
E
G
C
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
T
I
V
M
S
R
I
P
R
V
V
Y
G
A
D
D
P
K
G
G
C
S
G
S
L
M
----
N
L
L
Q
Q
S
N
F
N
H
R
A
I
V
D
K
G
V
L
K
E
A
C
S
T
L
L
T
T
F
F
K
N
L
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.60
38%
-122
- C7 -
1Z3A
1
TADA_ECOLI
A:
[8-116]
-
S
H
E
Y
W
M
R
H
A
L
T
L
A
K
R
A
W
-
D
E
R
-
E
V
P
-
V
G
A
V
L
V
H
--
N
N
R
V
I
G
E
G
W
N
R
P
I
G
R
H
D
P
T
A
H
A
E
I
M
A
L
R
Q
G
G
L
V
M
Q
N
-----
Y
R
L
I
D
A
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
A
M
I
H
S
R
I
G
R
V
V
F
G
A
R
D
A
K
T
G
A
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
61.50
38%
-122
- C7 -
1Z3A
1
TADA_ECOLI
B:
[8-116]
-
S
H
E
Y
W
M
R
H
A
L
T
L
A
K
R
A
W
-
D
E
R
-
E
V
P
-
V
G
A
V
L
V
H
--
N
N
R
V
I
G
E
G
W
N
R
P
I
G
R
H
D
P
T
A
H
A
E
I
M
A
L
R
Q
G
G
L
V
M
Q
N
-----
Y
R
L
I
D
A
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
A
M
I
H
S
R
I
G
R
V
V
F
G
A
R
D
A
K
T
G
A
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.90
38%
-119
- C7 -
3OCQ
1
?
A:
[17-126]
L
D
H
E
Y
W
M
R
H
A
L
T
L
A
K
R
A
W
-
D
E
R
-
E
V
P
-
V
G
A
V
L
V
H
--
N
H
R
V
I
G
E
G
W
N
R
P
I
G
R
H
D
P
T
A
H
A
E
I
M
A
L
R
Q
G
G
L
V
L
Q
N
-----
Y
R
L
L
D
T
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
A
M
V
H
S
R
I
G
R
V
V
F
G
A
R
D
A
K
T
G
A
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
60.58
40%
-110
- C7 -
1WWR
1
TADA_AQUAE
C:
[21-133]
M
G
K
E
Y
F
L
K
V
A
L
R
E
A
K
R
A
F
-
E
K
G
-
E
V
P
-
V
G
A
I
I
V
K
--
E
G
E
I
I
S
K
A
H
N
S
V
E
E
L
K
D
P
T
A
H
A
E
M
L
A
I
K
E
A
C
R
R
L
N
T
-----
K
Y
L
E
G
C
E
L
Y
V
T
L
E
P
C
------
I
M
C
S
Y
A
L
V
L
S
R
I
E
K
V
I
F
S
A
--
L
D
K
K
H
G
G
V
V
S
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
60.47
40%
-109
- C7 -
1WWR
1
TADA_AQUAE
B:
[21-133]
M
G
K
E
Y
F
L
K
V
A
L
R
E
A
K
R
A
F
-
E
K
G
-
E
V
P
-
V
G
A
I
I
V
K
--
E
G
E
I
I
S
K
A
H
N
S
V
E
E
L
K
D
P
T
A
H
A
E
M
L
A
I
K
E
A
C
R
R
L
N
T
-----
K
Y
L
E
G
C
E
L
Y
V
T
L
E
P
C
------
I
M
C
S
Y
A
L
V
L
S
R
I
E
K
V
I
F
S
A
--
L
D
K
K
H
G
G
V
V
S
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
117
HHSearch
60.05
33%
-104
- C7 -
2HXV
4
?
A:
[13-154]
-
M
Y
E
T
F
M
K
R
A
I
E
L
A
K
K
G
L
G
R
V
N
P
N
P
P
-
V
G
A
V
V
V
K
--
D
G
R
I
I
A
E
G
F
H
P
Y
----
F
G
G
P
H
A
E
R
M
A
I
E
S
A
R
K
K
--
G
-----
E
D
L
R
G
A
T
L
I
V
T
L
E
P
C
DHHGKT
P
P
C
T
D
L
I
I
E
S
G
I
K
T
V
V
I
G
T
R
D
P
N
P
V
S
-
G
N
G
-----
V
E
K
F
R
---
N
H
G
I
E
V
I
E
G
V
L
E
E
E
V
K
K
L
C
E
F
F
I
T
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
105
HHSearch
60.04
27%
-112
- C7 -
2NX8
2
TADA_STRP6
A:
[15-162]
-
E
Q
T
Y
F
M
Q
E
A
L
K
E
S
E
K
S
L
--
Q
K
A
E
I
P
-
I
G
C
V
I
V
K
--
D
G
E
I
I
G
R
G
H
N
A
R
E
E
S
N
Q
A
I
M
H
A
E
M
M
A
I
N
E
A
N
A
H
E
G
N
-----
W
R
L
L
D
T
T
L
F
V
T
I
E
P
C
------
V
M
C
S
G
A
I
G
L
A
R
I
P
H
V
I
Y
G
A
S
N
Q
K
F
G
G
V
D
S
L
Y
----
Q
I
L
T
D
E
R
L
N
H
R
V
Q
V
E
R
G
L
L
A
A
D
C
A
N
I
M
Q
T
F
F
R
Q
G
R
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
59.83
40%
-114
- C7 -
1WWR
1
TADA_AQUAE
D:
[21-133]
M
G
K
E
Y
F
L
K
V
A
L
R
E
A
K
R
A
F
-
E
K
G
-
E
V
P
-
V
G
A
I
I
V
K
--
E
G
E
I
I
S
K
A
H
N
S
V
E
E
L
K
D
P
T
A
H
A
E
M
L
A
I
K
E
A
C
R
R
L
N
T
-----
K
Y
L
E
G
C
E
L
Y
V
T
L
E
P
C
------
I
M
C
S
Y
A
L
V
L
S
R
I
E
K
V
I
F
S
A
--
L
D
K
K
H
G
G
V
V
S
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
59.23
40%
-110
- C7 -
1WWR
1
TADA_AQUAE
A:
[21-133]
M
G
K
E
Y
F
L
K
V
A
L
R
E
A
K
R
A
F
-
E
K
G
-
E
V
P
-
V
G
A
I
I
V
K
--
E
G
E
I
I
S
K
A
H
N
S
V
E
E
L
K
D
P
T
A
H
A
E
M
L
A
I
K
E
A
C
R
R
L
N
T
-----
K
Y
L
E
G
C
E
L
Y
V
T
L
E
P
C
------
I
M
C
S
Y
A
L
V
L
S
R
I
E
K
V
I
F
S
A
--
L
D
K
K
H
G
G
V
V
S
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.58
48%
-175
- C7 -
2B3J
5
TADA_STAAM
A:
[28-106]
-------------------------
P
-
I
G
A
I
I
T
K
--
D
D
E
V
I
A
R
A
H
N
L
R
E
T
L
Q
Q
P
T
A
H
A
E
H
I
A
I
E
R
A
A
K
V
L
G
S
-----
W
R
L
E
G
C
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
T
I
V
M
S
R
I
P
R
V
V
Y
G
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
58.30
48%
-173
- C7 -
2B3J
5
TADA_STAAM
C:
[28-106]
-------------------------
P
-
I
G
A
I
I
T
K
--
D
D
E
V
I
A
R
A
H
N
L
R
E
T
L
Q
Q
P
T
A
H
A
E
H
I
A
I
E
R
A
A
K
V
L
G
S
-----
W
R
L
E
G
C
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
T
I
V
M
S
R
I
P
R
V
V
Y
G
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
57.82
48%
-168
- C7 -
2B3J
3
TADA_STAAM
D:
[28-106]
-------------------------
P
-
I
G
A
I
I
T
K
--
D
D
E
V
I
A
R
A
H
N
L
R
E
T
L
Q
Q
P
T
A
H
A
E
H
I
A
I
E
R
A
A
K
V
L
G
S
-----
W
R
L
E
G
C
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
T
I
V
M
S
R
I
P
R
V
V
Y
G
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
57.13
48%
-173
- C7 -
2B3J
5
TADA_STAAM
B:
[28-106]
-------------------------
P
-
I
G
A
I
I
T
K
--
D
D
E
V
I
A
R
A
H
N
L
R
E
T
L
Q
Q
P
T
A
H
A
E
H
I
A
I
E
R
A
A
K
V
L
G
S
-----
W
R
L
E
G
C
T
L
Y
V
T
L
E
P
C
------
V
M
C
A
G
T
I
V
M
S
R
I
P
R
V
V
Y
G
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------