@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu13470: (2016-06-21 )
MASRNKLVVPGVEQALDQFKLEVAQEFGVNLGSDTVARANGSVGGEMTKRLVQQAQSQLNGTTK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------.........10----........20.......----.30...--.....40......---...50....-....60...-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------MASRN
K
L
VVP
G
----
V
E
Q
A
L
D
Q
F
K
L
E
V
A
Q
E
FG----VNLGSD--
T
V
ARAN-GSV
G
G
E
---
M
T
K
R
L
V
Q
Q
A
-
Q
S
QLNGTTK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_CBE
91.53
58%
-157
- C4 -
2Z3X
2
SSPC_BACSU
B:
[2-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
I
P
Q
----
A
A
S
A
I
E
Q
M
K
L
E
I
A
S
E
F
G
----
V
Q
L
G
A
E
--
T
T
S
R
A
N
-
G
S
V
G
G
E
---
I
T
K
R
L
V
R
L
A
-
Q
Q
N
M
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
90.32
58%
-160
- C4 -
2Z3X
2
SSPC_BACSU
A:
[2-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
I
P
Q
----
A
A
S
A
I
E
Q
M
K
L
E
I
A
S
E
F
G
----
V
Q
L
G
A
E
--
T
T
S
R
A
N
-
G
S
V
G
G
E
---
I
T
K
R
L
V
R
L
A
-
Q
Q
N
M
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
89.96
57%
-160
- C4 -
2Z3X
2
SSPC_BACSU
A:
[2-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
I
P
Q
----
A
A
S
A
I
E
Q
M
K
L
E
I
A
S
E
F
G
----
V
Q
L
G
A
E
--
T
T
S
R
A
N
-
G
S
V
G
G
E
---
I
T
K
R
L
V
R
L
A
-
Q
Q
N
M
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_CBE
87.88
58%
-144
- C4 -
2Z3X
2
SSPC_BACSU
C:
[2-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
I
P
Q
----
A
A
S
A
I
E
Q
M
K
L
E
I
A
S
E
F
G
----
V
Q
L
G
A
E
--
T
T
S
R
A
N
-
G
S
V
G
G
E
---
I
T
K
R
L
V
R
L
A
-
Q
Q
N
M
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
82.82
57%
-153
- C4 -
2Z3X
2
SSPC_BACSU
A:
[1-56]
------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
L
I
P
Q
----
A
A
S
A
I
E
Q
M
K
L
E
I
A
S
E
F
G
----
V
Q
L
G
A
E
--
T
T
S
R
A
N
-
G
S
V
G
G
E
---
I
T
K
R
L
V
R
L
A
-
Q
Q
N
M
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
55.65
21%
-55
* C4 *
2AJ1
-
CADA_LISMN
A:
[1-71]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
A
E
K
T
V
Y
R
V
D
G
LS--
C
T
N
C
A
A
K
F
E
R
N
V
K
E
I
E
G
----
V
T
E
A
I
V
--
N
F
G
A
S
K
-
I
T
V
T
G
E
---
A
S
I
Q
Q
V
E
Q
A
-
G
A
F
E
H
L
K
I
I
P
EKEA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.76
36%
-87
- C4 -
3AB5
1
?
A:
[17-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
C
A
G
D
Q
Y
I
L
D
A
A
E
E
Q
G
----
V
D
L
P
Y
S
--
C
R
A
G
A
C
-
S
T
C
A
G
K
---
L
V
K
G
S
V
D
Q
S
D
Q
S
F
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.13
27%
3
- C4 -
2GHF
2
ZHX1_HUMAN
A:
[1-102]
-------------------------------------------------------------------------------------------------------------------------------------------MAHHHHH
H
N
Q
Q
N
K
K
V
E
G
G
----
Y
E
C
K
Y
C
T
F
Q
T
P
D
L
N
M
F
T
----
F
H
V
D
S
E
HP
N
V
V
L
N
S
-
S
Y
V
C
V
E
CNF
L
T
K
R
Y
--
D
A
-
L
S
E
H
N
L
K
Y
H
PG
E
E
N
F
K
L
T
M
V
K
R
NNQT
I
F
E
Q
T
I
NDLTF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.07
25%
-89
- C4 -
2Y8V
-
?
A:
[134-189]
-------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
S
L
P
G
----
I
I
R
L
I
D
R
L
K
L
D
L
G
D
D
F
I
----
I
T
L
A
P
V
--
A
A
A
L
L
G
I
G
N
L
S
G
F
---
D
Y
R
Q
L
E
Q
Q
R
-
G
S
K
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.80
34%
-102
- C4 -
3WCQ
1
?
A:
[17-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
C
A
G
D
Q
Y
I
L
D
A
A
E
E
Q
G
----
V
D
L
P
Y
S
--
C
R
A
G
A
C
-
S
T
C
A
G
K
---
L
V
K
G
S
V
N
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
45.42
18%
-128
- C4 -
1X2I
-
?
A:
[2-69]
-----------------------------------------------------------------------------------------------------------------------------------------------ALT
L
A
E
R
Q
R
L
I
V
E
G
----
L
P
H
V
S
A
T
L
A
R
R
L
L
K
H
F
G
S
V
E
R
V
F
T
A
S
V
--
A
E
L
M
K
V
-
E
G
I
G
E
K
---
I
A
K
E
I
R
R
V
I
-
T
A
P
Y
I
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
41.87
31%
-115
- C4 -
4G6V
-
CDII2_BURP2
B:
[46-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
K
E
I
A
A
E
H
G
----
L
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
41.80
17%
54
- C4 -
3J6V
-
RT10_BOVIN
J:
[1-201]
---------------------------------------------------------------------------MAVRAVFGALGRRLWQGSKNFSVSSSRSNIAKNDGFLLSTSMKWVQFSNLHVDVPKDLTKPTITISDEPDT
L
Y
K
R
L
S
V
L
V
K
G
HDKA
V
L
D
S
Y
E
Y
F
A
V
L
A
A
K
E
L
G
----
I
S
V
K
V
H
--
E
P
P
R
K
I
-
E
R
F
T
L
L
---
K
S
V
H
I
F
K
K
H
-
R
V
Q
Y
E
M
R
T
L
YRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTRLEQLPEHIKKPVWETTPEEKGDSKS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.65
20%
34
- C2 -
4J5T
4
CWH41_YEAST
A:
[1-811]
A
E
F
M
E
E
Y
Q
K
F
T
N
E
S
L
LWAPYRSNCY
F
G
M
R
P
R
YVHESPL
I
M
G
I
M
W
F
N
SLSQDGLHSLRHFATPQDKLQ
K
Y
G
W
EVYDPR
I
G
G
K
E
V
F
I
D
EKNNLN
L
T
V
Y
F
V
K
S
KNGE
N
W
S
V
R
V
Q
G
E
P
LDPKRPSTAS
V
V
L
Y
F
S
QNGGEIDG
K
S
S
L
A
M
IG
H
D
G
P
N
D
M
K
F
F
G
----
Y
S
K
E
L
G
E
Y
H
L
T
V
K
D
N
F
G
H
Y
F
-
K
N
P
E
Y
E
--
T
M
E
V
A
P
-
G
S
D
C
S
K
---
T
S
H
L
S
L
Q
I
P
-
D
K
E
V
W
K
A
R
D
V
F
Q
S
L
V
S
D
S
I
R
D
I
L
ERPADL
I
P
S
V
L
TIRNLYNFNPGN
F
H
Y
I
Q
K
T
F
D
LTKKD
G
F
Q
F
D
I
T
Y
N
K
LGTTQSIST
R
E
Q
V
T
E
L
I
T
W
S
L
N
E
I
N
A
R
F
D
K
Q
F
S
F
G
EGPDSIES
V
E
V
K
R
R
F
A
L
E
T
L
S
N
L
L
G
G
I
G
Y
F
Y
G
N
Q
L
I
D
RETEFDESQFTEIKLLN
A
K
E
E
G
P
F
E
L
F
T
S
V
PSRGFFPRGF
Y
W
D
E
G
F
H
L
L
Q
I
M
E
Y
D
F
D
L
A
F
E
I
L
A
S
W
F
E
M
IEDDSGWIAR
E
I
I
L
G
N
E
A
R
S
K
VPQEFQVQNPNIANPP
T
L
L
L
A
F
S
E
M
L
S
R
A
I
E
N
I
GDFMTNNLEAN
P
G
L
L
T
E
Y
A
K
K
I
Y
P
K
L
L
K
H
Y
N
W
F
R
K
S
Q
TGLIDEY
E
E
I
L
E
D
E
GIWDKIHKNEVYRWVGRTFTHCLPSGMDDYPRAQPPDVAELN
V
D
A
L
A
W
V
G
V
M
T
R
S
M
K
Q
I
A
H
V
L
KL
T
Q
D
E
Q
R
Y
A
Q
I
E
Q
E
V
V
E
N
L
D
L
LHWSENDN
C
Y
C
D
I
S
I
DPEDDE
I
R
E
F
VCHEGYVSV
L
P
F
A
L
KLIPKNS
P
K
L
E
K
V
V
A
L
M
S
DPEKIFSDYGLLSLSRQDDYFGKDENYWR
G
P
I
W
M
N
I
N
Y
L
C
L
D
A
M
R
Y
Y
Y
PEVILDVAGEAS
N
A
K
K
L
Y
Q
S
L
K
I
N
L
S
N
N
I
Y
K
V
W
E
EQGYCYE
N
Y
S
PIDGHGTGAEHFTGWTAL
V
V
N
I
L
G
R
F
RS
H
H
H
H
HH
19
Fugue
35.33
13%
-67
- C4 -
1EV0
-
MINE_ECOLI
A:
[31-88]
--------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
A
E
----
P
H
----
Y
L
P
Q
L
R
K
D
I
L
E
V
I
C
K
Y
-----
V
Q
I
D
P
E
--
M
V
T
V
Q
L
-
E
Q
K
D
G
D
---
I
S
I
L
E
L
N
V
T
-
L
P
E
A
E
E
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
35.22
26%
-
- C- -
1USE
-
VASP_HUMAN
A:
[341-359]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
D
L
Q
R
V
K
Q
E
L
L
E
E
V
K
----
K
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
34.66
13%
-23
- C4 -
1D8B
-
A:
[15-38]
----------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
M
----
T
Y
E
R
L
R
E
L
S
L
N
L
G
N
R
M
V
----
P
P
V
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
33.80
17%
-56
- C4 -
1ND9
-
IF2_ECOLI
A:
[7-18]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
L
A
A
E
R
Q
----
T
S
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
25.55
12%
70
- C4 -
1F3Y
-
?
A:
[1-165]
------------------------------------------------------------------------------------------------------------GPLGSMDSPPEGYRR
N
V
G
I
C
L
M
N
NDKKIF
A
A
S
R
LDIPD
A
W
Q
M
P
Q
G
G
I
D
E
----
G
E
D
P
R
N
A
A
I
R
E
L
R
E
E
T
G
----
V
T
S
-
A
E
--
V
I
A
E
V
P
-
Y
W
L
T
Y
D
---
F
P
P
K
V
R
E
K
L
-
N
I
Q
W
G
S
D
W
K
G
Q
A
Q
K
W
F
L
F
K
FTGQDQEINLLGDGS
E
K
P
E
F
G
E
W
S
W
V
T
P
E
Q
L
I
D
L
TVEFK
K
P
V
Y
K
E
V
L
S
V
F
A
PHL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
24.35
18%
-
- C1 -
3VEJ
-
MDY2_YEAST
A:
[25-35]
------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
V
R
Q
V
M
E
R
L
Q
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------