@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14110: (2016-06-22 )
MADSFLFYNLSEAQMTFQDVMERLKAFVQKDPRSSYVLSIGTDSQVYRDYTKFITALHLHRTGKGAWGCLKNHTVDRPIHSLREKISLETAYSQETAAHILDGHLMDITDLLLPFTGEGADLTFEVHLDIGKKGLTKDLIQEMTGRITSMGIEAKIKPDSYTAFSYANRFTK
Atome Classification :
(20 SA)
------------------------------------.........10----------------.........20...------..---...30....---------.---..-.40------.........50...-.------------.---..----.60..----......70-....----------....80....---------.---..----..90........100.-------....-----------------.--..110.----......120.....---..-------130-.---........140......-------.150------...---....160.---......170---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------MAD
S
F
L
F
YNL-----------------
S
E
A
Q
M
T
F
Q
D
V
M
E
R
L
------
K
A
---
F
V
QKDPRS
S
---------
Y
---
V
L
-
S
I-------GT
D
S
Q
V
Y
R
D
Y
T
K
F
I
-
T
------------
A
---
L
H----LHRTG----KGAWGCLK-NHTV----------DR
P
I
H
-
S
L
R
E
---------
K
---
I
S
----LETAYS
Q
E
T
A
A
H
I
L-D-------G
H
L
M
-----------------
D
--
I
T
D
L
LL----PFTGEGA
D
L
T
F
E
V
H
---
L
D-------I---G---KKGL
T
K
D
L
I
Q
E
M
T
G
R
I
T-------SM
G
I
------
E
A
K
---IKPDSY
T
A
---
F
S
Y
A
NRFTK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
72.01
19%
-120
- C2 -
4UVJ
-
SCC3_YEAST
A:
[674-1059]
--------------------------------DSVK
E
I
V
L
P
L
F
Y
D
L
-----------------
L
N
A
A
S
I
L
C
P
L
L
E
S
F
------
I
T
---
F
----------------------------------
S
E
T
E
L
K
K
I
T
D
K
T
I
-
K
------------
A
---
F
M
----
D
S
T
I
G
----
N
S
K
V
D
-
M
K
-
Y
D
I
F
----------
A
K
F
I
H
-
H
I
H
H
---------
F
---
E
K
----
K
E
L
Q
E
K
F
L
N
Q
I
A
T
L
-
K
-------
I
H
L
K
-----------------
K
--
F
L
Q
E
K
M
----
D
P
N
N
S
R
D
D
--------------------------
Y
K
D
L
T
C
S
L
Y
E
L
Y
I
N
K
L
T
-------
I
L
G
R
------
D
Y
P
---
I
E
V
D
E
E
L
L
---
Q
L
F
L
N
N
F
V
S
RIPIMFQDFD
D
S
T
A
Q
E
INF
K
M
L
V
L
L
A
T
W
N
L
E
K
W
R
E
I
I
E
K
V
RDLRSVW
K
P
I
A
A
I
I
G
R
L
N
T
L
V
I
S
L
A
A
T
N
E
T
FEN
I
N
S
L
F
Y
L
K
W
S
A
C
T
S
L
M
D
I
I
V
A
I
K
I
F
E
L
K
LPADA
T
T
W
R
Y
S
M
S
E
Q
F
PFYLH
D
N
A
S
K
V
L
L
K
I
F
L
Y
L
E
S
L
F
A
K
Q
V
D
V
Q
L
E
R
V
ADEDANLNDLPETGFFEN
I
E
T
E
F
L
L
F
T
V
K
L
K
G
L
M
K
L
NILD
E
R
F
A
S
R
V
A
L
NKEKLG
P
L
F
K
K
I
V
41
Fugue
71.57
20%
-94
- C3 -
2RHK
4
NS1_I72A2
A:
[2-120]
---------------------------------------------------------------------------------------------
P
A
S
R
---------
Y
---
I
T
-
D
M
--------
T
I
E
E
L
S
R
D
W
F
M
L
----------------------------------------
M
P
-
K
Q
K
V
----------
E
G
P
L
C
-
I
R
I
D
---------
Q
---
A
I
----
M
D
K
N
I
M
L
K
A
N
F
S
V
I
-
F
-------
D
R
L
E
-----------------
T
--
L
I
-
L
L
R
----
A
F
T
E
E
G
A
-
I
V
G
E
I
S
---
P
L
-------
P
---
S
---
F
P
G
H
T
I
E
D
V
K
N
A
I
G
V
L
I
-------
G
-
G
L
------
E
W
N
-----
D
N
T
V
R
V
---
S
K
T
L
Q
R
F
A
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
66.33
16%
-119
- C3 -
1VRT
1
A:
[4-244]
---------------------------------------
P
I
E
T
V
P
V
K
L
KPGMD
G
P
K
V
K
Q
W
PLT
E
E
K
I
K
A
L
V
E
I
C
T
E
M
------
E
K
E
GK
I
S
K
I
G
P
E
N
P
---------
Y
N
T
P
V
F
-
A
I
K
------
K
K
D
S
T
K
W
R
K
L
V
D
F
R
-
E
------------
L
---
N
K
R
T
Q
D
F
W
E
V
Q
----
L
G
-
I
P
H
P
A
-
G
L
K
K
-----------
K
K
S
V
-
T
V
L
D
V
G
DAYF---
S
---
V
P
----
L
D
E
D
F
R
K
Y
T
A
F
T
I
P
-
S
INNETPG
I
R
Y
Q
Y
NVLPQGWKG
S
P
A
I
F
Q
S
S
--
M
T
K
I
L
E
----
P
F
R
K
Q
N
P
D
I
V
I
Y
Q
Y
MD
D
L
Y
-------
V
---
G
S
DL
E
I
G
Q
H
R
T
K
I
E
E
L
R
Q
H
L
L
-------
R
W
G
L
------
T
T
P
---
D
K
K
H
Q
K
--EPP
F
L
W
M
G
Y
E
L
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
65.44
20%
-78
* C3 *
2Q8Y
1
SPVC_SALTY
A:
[27-241]
---------------------------------------------------------------
P
S
T
N
K
H
L
K
N
N
F
N
S
L
------
H
N
---
Q
M
R
K
M
P
V
S
H
---------
F
---
K
E
-
A
L
-------
D
V
P
-----
D
Y
S
G
M
R
-
Q
------------
S
---
G
F
----
F
A
M
S
Q
----
G
---
F
Q
L
N
-
N
H
G
Y
----------
D
V
F
I
H
-
A
R
R
E
SPQGKFAG
D
K
---
F
H
----
I
S
V
L
R
D
M
V
P
Q
A
F
Q
A
-
L
-------
S
G
L
L
FSEDSPVD
K
W
-------
A
--
V
T
D
M
E
K
VVQQ
A
R
V
S
L
G
A
Q
F
T
L
Y
I
K
---
P
D
QENSQYS
A
---
S
---
F
L
H
K
T
R
Q
F
I
E
C
L
E
S
R
L
S
-------
E
N
G
V
I
S
G
QCP
E
S
D
---
V
H
P
E
N
W
K
Y
---
L
S
Y
R
N
E
L
R
S
GRDGG
E
M
Q
R
Q
A
L
R
E
E
P
F
Y
R
L
M
T
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
62.04
23%
-87
- C2 -
3AEV
1
?
B:
[39-164]
-------------------------------------------------------------------------------------------
K
I
P
K
D
R
---------
I
---
A
V
-
L
I
-------
G
K
K
G
Q
T
K
K
E
I
E
K
R
T
K
T
------------
K
---
I
T
----
I
D
S
E
T
----
G
E
V
W
I
T
S
T
-
K
E
T
E
----------
D
-
P
L
A
-
V
W
K
A
---------
R
D
I
V
L
A
----
I
G
R
G
F
S
P
E
R
A
F
R
L
L
N
E
-------
G
E
Y
L
-----------------
E
--
I
I
N
L
T
D
----
I
I
------
A
L
P
R
V
R
---
G
R
-------
I
I
--
G
---
R
K
G
R
T
R
Q
I
I
E
E
M
S
G
A
S
V
-------
S
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
61.72
23%
-85
- C2 -
2E3U
-
?
A:
[39-164]
-------------------------------------------------------------------------------------------
K
I
P
K
D
R
---------
I
---
A
V
-
L
I
-------
G
K
K
G
Q
T
K
K
E
I
E
K
R
T
K
T
------------
K
---
I
T
----
I
D
S
E
T
----
G
E
V
W
I
T
S
T
-
K
E
T
E
----------
D
-
P
L
A
-
V
W
K
A
---------
R
D
I
V
L
A
----
I
G
R
G
F
S
P
E
R
A
F
R
L
L
N
E
-------
G
E
Y
L
-----------------
E
--
I
I
N
L
T
D
----
I
I
------
A
L
P
R
V
R
---
G
R
-------
I
I
--
G
---
R
K
G
R
T
R
Q
I
I
E
E
M
S
G
A
S
V
-------
S
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
59.58
28%
-58
- C2 -
1Q1Z
1
ST2B1_HUMAN
A:
[190-271]
--------------------------------------
D
N
F
L
F
I
T
Y
-----------------
E
E
L
Q
Q
D
L
Q
G
S
V
E
R
I
------
C
G
---
F
L
G
R
P
L
G
K
E
---------
A
---
L
G
-
S
V
V
A
H
S
T
F
S
A
M
K
A
N
T
M
S
N
Y
T
L
L
P
-
P
------------
S
---
L
L
----
D
H
R
R
G
AFLR
K
G
V
C
G
D
W
K
-
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.82
28%
-51
- C2 -
1Q20
2
ST2B1_HUMAN
A:
[190-271]
--------------------------------------
D
N
F
L
F
I
T
Y
-----------------
E
E
L
Q
Q
D
L
Q
G
S
V
E
R
I
------
C
G
---
F
L
G
R
P
L
G
K
E
---------
A
---
L
G
-
S
V
V
A
H
S
T
F
S
A
M
K
A
N
T
M
S
N
Y
T
L
L
P
-
P
------------
S
---
L
L
----
D
H
R
R
G
AFLR
K
G
V
C
G
D
W
K
-
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
58.57
28%
-49
- C2 -
1Q22
2
ST2B1_HUMAN
A:
[190-271]
--------------------------------------
D
N
F
L
F
I
T
Y
-----------------
E
E
L
Q
Q
D
L
Q
G
S
V
E
R
I
------
C
G
---
F
L
G
R
P
L
G
K
E
---------
A
---
L
G
-
S
V
V
A
H
S
T
F
S
A
M
K
A
N
T
M
S
N
Y
T
L
L
P
-
P
------------
S
---
L
L
----
D
H
R
R
G
AFLR
K
G
V
C
G
D
W
K
-
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.57
28%
-57
- C2 -
1Q1Q
2
ST2B1_HUMAN
A:
[188-269]
--------------------------------------
D
N
F
L
F
I
T
Y
-----------------
E
E
L
Q
Q
D
L
Q
G
S
V
E
R
I
------
C
G
---
F
L
G
R
P
L
G
K
E
---------
A
---
L
G
-
S
V
V
A
H
S
T
F
S
A
M
K
A
N
T
M
S
N
Y
T
L
L
P
-
P
------------
S
---
L
L
----
D
H
R
R
G
AFLR
K
G
V
C
G
D
W
K
-
N
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
58.46
33%
-129
- C2 -
2YMM
1
?
A:
[51-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
-------
S
Q
T
L
-----------------
T
--
L
T
G
L
Y
R
----
P
F
-
G
E
I
A
A
A
V
F
E
M
V
---
A
A
-------
N
---
H
---
Q
A
K
V
T
P
D
D
I
A
E
L
K
T
R
L
T
-------
S
M
P
A
------
Y
P
D
---
V
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
58.29
33%
-136
- C2 -
4CE6
-
?
A:
[51-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
-------
S
Q
T
L
-----------------
T
--
L
T
G
L
Y
R
----
P
F
-
G
E
I
A
A
A
V
F
E
M
V
---
A
A
-------
N
---
H
---
Q
A
K
V
T
P
D
D
I
A
E
L
K
T
R
L
T
-------
S
M
P
A
------
Y
P
D
---
V
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.18
33%
-128
- C2 -
4CF4
-
?
A:
[51-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
-------
S
Q
T
L
-----------------
T
--
L
T
G
L
Y
R
----
P
F
-
G
E
I
A
A
A
V
F
E
M
V
---
A
A
-------
N
---
H
---
Q
A
K
V
T
P
D
D
I
A
E
L
K
T
R
L
T
-------
S
M
P
A
------
Y
P
D
---
V
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.03
26%
-147
- C2 -
2EWV
1
?
A:
[202-302]
----------------------------------------------------------------------------
L
------
R
A
---
A
L
R
E
D
P
D
V
I
---------
F
---
V
G
-
E
M
--------------
R
D
L
E
T
V
E
-
T
------------
A
---
L
R
----
A
A
E
T
G
----
H
L
V
F
G
T
L
H
-
T
N
T
A
----------
I
D
T
I
H
-
R
I
V
D
---------
I
---
F
P
----
L
----
N
Q
Q
E
Q
V
R
I
V
-
L
-------
S
F
I
L
-----------------
Q
G
I
I
S
Q
R
L
L
----
P
K
I
G
G
G
R
V
L
A
Y
E
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
57.89
33%
-120
- C2 -
2YN4
1
?
A:
[51-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
-------
S
Q
T
L
-----------------
T
--
L
T
G
L
Y
R
----
P
F
-
G
E
I
A
A
A
V
F
E
M
V
---
A
A
-------
N
---
H
---
Q
A
K
V
T
P
D
D
I
A
E
L
K
T
R
L
T
-------
S
M
P
A
------
Y
P
D
---
V
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.88
33%
-128
- C2 -
4CF5
-
?
A:
[51-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
-------
S
Q
T
L
-----------------
T
--
L
T
G
L
Y
R
----
P
F
-
G
E
I
A
A
A
V
F
E
M
V
---
A
A
-------
N
---
H
---
Q
A
K
V
T
P
D
D
I
A
E
L
K
T
R
L
T
-------
S
M
P
A
------
Y
P
D
---
V
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
57.03
12%
-78
- C4 -
2O4X
-
SND1_HUMAN
A:
[654-870]
------------------------S
A
S
Y
K
P
V
F
V
T
E
I
T
D
D
L
H
F
Y
V
Q
D
-----------------
V
E
T
G
T
Q
F
E
K
L
M
E
N
M
------
R
N
---
D
I
A
S
H
P
P
V
E
GS
Y
A
P
R
RG
E
F
---
C
I
-
A
K
-------
F
V
D
G
E
W
Y
R
A
R
V
E
K
V
-
E
------------
S
PA
K
I
H
----
V
F
Y
I
D
----
Y
G
N
R
E
V
L
P
-
S
T
R
L
GTLSPAFSTR
V
L
P
A
Q
-
A
T
E
Y
---------
A
---
F
A
FIQV
P
Q
D
D
D
A
R
T
D
A
V
D
S
V
-
V
-------
R
D
I
Q
-----------------
N
--
T
Q
C
L
L
N
----
V
E
H
L
S
A
G
C
P
H
V
T
L
Q
---
F
A
-------
D
---
S
---
K
G
D
V
G
L
G
L
V
K
E
G
L
V
M
V
E
VRKEKQF
Q
K
V
I
------
T
E
Y
---
L
N
A
Q
E
S
A
K
---
S
A
R
L
N
L
W
R
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
56.45
12%
-78
* C4 *
2HQE
-
SND1_HUMAN
A:
[654-870]
------------------------S
A
S
Y
K
P
V
F
V
T
E
I
T
D
D
L
H
F
Y
V
Q
D
-----------------
V
E
T
G
T
Q
F
Q
K
L
M
E
N
M
------
R
N
---
D
I
A
S
H
P
P
V
E
GS
Y
A
P
R
RG
E
F
---
C
I
-
A
K
-------
F
V
D
G
E
W
Y
R
A
R
V
E
K
V
-
E
------------
S
PA
K
I
H
----
V
F
Y
I
D
----
Y
G
N
R
E
V
L
P
-
S
T
R
L
GTLSPAFSTR
V
L
P
A
Q
-
A
T
E
Y
---------
A
---
F
A
FIQV
P
Q
D
D
D
A
R
T
D
A
V
D
S
V
-
V
-------
R
D
I
Q
-----------------
N
--
T
Q
C
L
L
N
----
V
E
H
L
S
A
G
C
P
H
V
T
L
Q
---
F
A
-------
D
---
S
---
K
G
D
V
G
L
G
L
V
K
E
G
L
V
M
V
E
VRKEKQF
Q
K
V
I
------
T
E
Y
---
L
N
A
Q
E
S
A
K
---
S
A
R
L
N
L
W
R
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
56.44
16%
-39
- C1 -
3U4T
-
?
A:
[230-487]
V
E
F
R
Y
A
D
F
L
F
K
N
NN
Y
A
E
A
I
E
V
F
N
K
L
E
A
K
KYNSP
Y
I
Y
N
R
R
A
V
C
Y
Y
E
L
-----------------
A
K
Y
D
L
A
Q
K
D
I
E
T
Y
F
S
K
VNAT
K
A
---
K
S
A
D
F
E
Y
Y
G
---------
K
---
I
L
M
K
K
-------
G
Q
D
S
L
A
I
Q
Q
Y
Q
A
A
V
-
D
R
DTTRL
D
M
Y
G
Q
I
G
---
S
Y
----
F
Y
N
K
G
----
N
F
P
L
A
I
Q
Y
M
E
K
Q
I
----------
R
P
T
T
T
-
D
P
K
V
---------
F
---
Y
E
----
L
G
Q
A
Y
Y
Y
N
K
E
Y
V
K
A
-
D
-------
S
S
F
V
-----------------
K
--
V
L
E
L
K
-----
P
N
I
Y
I
G
Y
L
W
R
A
R
A
N
---
A
A
-------
Q
D
P
D
T
---
K
Q
G
L
A
K
P
Y
Y
E
K
L
I
E
V
C
A
-------
P
G
G
A
------
K
Y
K
D
E
L
I
E
A
N
E
Y
I
A
---
Y
Y
Y
T
I
N
R
D
K
V
K
A
D
A
A
W
K
N
I
L
A
L
DPTN
K
K
A
I
D
G
L
K--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.59
24%
-111
- C2 -
3OZQ
-
?
A:
[143-255]
----------------------------------------------------------------------
N
D
A
A
K
L
M
------
N
A
---
W
V
E
E
--
Q
T
Q
---------
H
---
K
I
-
Q
N
-------
L
V
D
P
E
I
L
N
N
L
T
R
V
V
-
L
------------
I
---
N
A
----
L
Y
F
N
A
----
K
W
L
V
P
F
P
P
-
F
H
T
R
----------
K
S
D
F
H
K
S
A
K
E
---------
V
---
V
Q
----
V
D
T
M
Y
L
D
E
Q
Y
F
N
Y
Y
-
E
-------
C
H
H
L
-----------------
D
--
A
K
L
L
E
L
----
P
F
K
G
-
G
A
S
L
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------