@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14120: (2016-06-22 )
MRMSLIGERFTEEEQKLLLNILINHEYAIELLSSEINDIETGTKNVDGTTYKKLVTLYDRFRFEN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......-..20.-.....------..30....--....40.......----.50........--60....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRM
S
L
I
G
E
RF
T
E
E
E
Q
K
L
-
L
L
N
I
L
-IN
H
E
Y
------
A
I
E
L
L
S
S
E
--
I
N
DIETGTKNVD
G
----
T
T
Y
K
K
L
V
T
L
Y
D
--
R
FRFEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
61.39
100%
55
- C3 -
2LZF
-
YKZF_BACSU
A:
[1-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSH
M
R
M
S
L
I
G
E
R
F
T
E
E
E
Q
K
L
-
L
L
N
I
L
-
I
N
H
E
Y
------
A
I
E
L
L
S
S
E
--
I
N
D
I
E
T
G
T
K
N
V
D
G
----
T
T
Y
K
K
L
V
T
L
Y
D
--
R
F
R
F
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
61.08
100%
55
- C3 -
2LZF
-
YKZF_BACSU
A:
[4-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
M
S
L
I
G
E
R
F
T
E
E
E
Q
K
L
-
L
L
N
I
L
-
I
N
H
E
Y
------
A
I
E
L
L
S
S
E
--
I
N
D
I
E
T
G
T
K
N
V
D
G
----
T
T
Y
K
K
L
V
T
L
Y
D
--
R
F
R
F
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
61.08
100%
55
- C3 -
2LZF
-
YKZF_BACSU
A:
[4-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
M
S
L
I
G
E
R
F
T
E
E
E
Q
K
L
-
L
L
N
I
L
-
I
N
H
E
Y
------
A
I
E
L
L
S
S
E
--
I
N
D
I
E
T
G
T
K
N
V
D
G
----
T
T
Y
K
K
L
V
T
L
Y
D
--
R
F
R
F
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
43.79
16%
-116
- C3 -
2K0M
-
?
A:
[32-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
G
D
I
V
S
T
V
D
G
A
F
-
L
V
E
A
L
-
K
R
H
P
D
------
A
T
S
K
I
G
P
G
--
V
R
N
F
E
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
43.46
39%
-156
- C3 -
2LTD
-
?
A:
[53-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
I
T
L
S
E
E
E
F
G
V
-
L
L
K
E
L
-
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.55
9%
-100
- C3 -
2JMW
-
TGT1_ARATH
A:
[81-166]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
A
E
T
W
V
Q
D
E
T
R
S
-
L
I
M
F
R
-
R
G
M
D
G
------
L
F
N
T
S
K
S
N
--
K
H
L
W
E
Q
I
S
S
K
M
R
E
K
G
F
D
R
S
P
T
M
C
T
D
K
W
R
--
N
L
L
K
E
F
K
K
AKHHDRGNGSA
K
M
S
Y
YKE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.29
19%
-140
- C3 -
2EWT
2
?
A:
[37-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
V
--
V
G
S
Y
E
R
G
D
R
A
V
T
V
----
Q
R
L
A
E
L
A
D
F
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
41.03
10%
-91
- C3 -
2EWT
3
?
A:
[1-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
S
E
Y
A
K
Q
L
G
A
K
L
R
A
I
R
T
Q
Q
-
G
L
S
L
H
G
V
E
E
K
S
------
Q
G
R
W
K
A
V
V
--
V
G
S
Y
E
R
G
D
R
A
V
T
V
----
Q
R
L
A
E
L
A
D
F
Y
G
VP
V
Q
E
L
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
40.68
17%
-146
- C3 -
2L3A
-
?
A:
[55-72]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
I
T
L
S
N
E
E
F
Q
T
-
M
V
D
A
F
-
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
40.13
12%
-78
- C3 -
4OB4
-
?
A:
[3-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
E
Y
A
K
Q
L
G
A
K
L
R
A
I
R
T
Q
Q
G
L
S
L
H
G
-
V
E
E
K
S
------
Q
G
R
W
K
A
V
V
--
V
G
S
Y
E
R
G
D
R
A
V
T
V
----
Q
R
L
A
E
L
A
D
F
Y
G
--
V
P
V
Q
E
L
LP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
39.43
29%
-82
- C3 -
3PM7
-
?
A:
[53-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
I
T
L
T
N
E
E
F
A
E
-
L
S
K
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.19
17%
-130
- C3 -
4G06
2
?
A:
[60-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
I
T
L
S
N
E
E
F
Q
T
-
M
V
D
A
F
-
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
38.46
15%
-59
- C4 -
1F62
2
A:
[1-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
C
K
V
C
R
K
--
K
G
E
D
D
K
L
-
I
L
C
D
E
-
C
N
K
A
F
------
H
L
F
C
L
R
P
A
--
L
Y
E
V
P
D
G
E
W
Q
C
P
A
----
C
Q
P
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.35
19%
-119
- C3 -
3IVP
-
?
A:
[39-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
Y
--
L
T
N
I
E
N
K
G
Q
H
P
S
L
----
Q
V
L
Y
D
L
V
S
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
35.12
22%
-102
- C3 -
3U3W
3
?
A:
[32-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
--
V
S
R
I
E
S
G
A
V
Y
P
S
M
----
D
I
L
Q
G
I
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
34.55
15%
-105
- C3 -
4I6R
3
?
A:
[39-64]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
--
I
S
G
I
E
R
N
S
R
N
L
T
I
----
K
S
L
E
L
I
M
K
G
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
33.08
21%
-79
- C3 -
3U43
-
IMM2_ECOLX
A:
[3-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
H
S
I
S
D
Y
T
E
A
E
F
L
E
-
F
V
K
K
I
-
C
R
A
E
G
------
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
32.87
24%
-44
- C3 -
4QM9
-
CDOA_BACSU
A:
[16-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
C
--
I
Q
D
I
F
G
G
L
K
N
P
S
V
----
K
D
L
A
T
S
L
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
32.54
22%
-53
- C3 -
1FR2
-
IMM9_ECOLX
A:
[3-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
H
S
I
S
D
Y
T
E
A
E
F
L
Q
-
L
V
T
T
I
-
C
N
A
D
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
30.65
23%
-20
- C3 -
4WRT
2
?
A:
[14-730]
S
M
D
T
F
I
T
R
N
F
Q
T
T
I
I
Q
K
A
K
N
T
M
A
E
F
SEDPELQ
P
A
M
L
F
N
I
C
V
H
L
E
V
C
Y
V
I
S
DM
N
F
L
D
EEG
K
A
Y
T
ANLRPQYEVIEGMP
R
T
I
A
W
M
V
Q
R
S
L
A
Q
E
H
G
I
E
T
P
KYLADLFDYKTK
R
F
I
E
V
G
I
T
KGL
A
D
D
Y
F
W
K
K
K
E
K
LGNS
M
E
L
M
I
F
S
YNQ
D
Y
S
L
S
NESSLD
E
E
G
K
G
R
V
L
S
R
L
T
E
L
Q
A
E
L
S
L
K
NL
W
Q
V
L
I
G
E
E
D
V
E
K
G
I
D
F
K
L
G
Q
T
I
S
R
L
R
D
I
S
VPAGFSN
F
E
G
M
R
S
Y
I
D
N
IDPKG
A
I
E
R
N
L
A
R
MS
P
L
V
S
V
T
P
K
K
L
T
W
E
D
L
R
P
-
I
G
P
H
I
-
Y
N
H
E
L
PEVPYN
A
F
L
L
M
S
D
E
LG
L
A
N
M
T
E
G
K
S
K
K
P
K
----
T
L
A
K
E
C
L
E
K
Y
S
--
T
L
R
D
Q
T
D
P
I
L
IMKSEKAN
E
N
F
L
W
K
L
W
R
D
C
V
N
T
I
S
NEEMSNELQKT
N
Y
A
K
W
A
T
GDGL
T
Y
Q
K
I
M
K
E
V
A
I
D
DETMCQEEPK
I
P
N
K
C
R
V
A
A
W
V
Q
T
E
M
N
L
L
S
TLTSKRALD
L
P
E
I
G
PDVA
P
V
E
H
V
G
S
E
R
R
K
Y
F
V
N
E
I
N
Y
C
K
A
S
T
V
M
M
K
Y
V
L
F
H
T
S
L
L
N
E
S
N
A
S
M
G
K
Y
K
V
I
P
I
T
N
R
V
V
N
EKG
E
S
F
D
M
L
Y
G
L
A
V
K
G
QSHLRGDT
D
V
V
T
V
V
T
F
E
F
S
STDPRVDSGKWPK
Y
T
V
F
R
I
GSLFVSG
R
E
K
S
V
Y
L
Y
C
R
VNGTN
K
I
Q
M
K
W
G
M
E
ARR
C
L
L
Q
S
M
Q
Q
M
E
A
I
V
E
Q
E
S
S
I
Q
GYDM
T
K
A
C
F
KGDRVNSPKTFSIGTQEG
K
L
V
K
G
S
F
G
K
A
L
R
V
I
F
T
K
C
L
M
H
Y
V
F
GN
A
Q
L
E
G
F
S
A
E
S
R
R
L
L
L
L
I
Q
A
L
K
D
RKGPWVFD
L
E
G
M
Y
S
G
I
E
E
C
ISNN
P
W
V
I
Q
S
A
Y
W
F
N
E
W
L
G
F
E
K
E
G
S
K
V