@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu15310: (2016-06-24 )
MKIYLDVIWLLNFCFDALLLLLTAFILKRHVKKRRLVGGAFIGSSIVLLMFTPFSPIVEHPAGKLAFSVVIVVVTFGFKRFRFFFQNLFSFYFATFLMGGGIIGAHSLLQSNSIVQNGVMITNQTGFGDPISWLFIVGGFPALWFFSKRRIEDIETKNIQYEERVSVQADLGSQTLHVRGLIDSGNQLYDPLTKTPVMIIYIDKLEPIFGTAETMIIRNTDPLEAIEQLDDSFRFLDKMRLIPYRGVGQQNQFLLCVKPDHVTIMTKEEMISADKCLIGISTTKLSADGEFDAIIHPKMLSGKAVKHVS
Atome Classification :
(20 SA)
---------------------------------------------------------........---.10........20..------------......30........-40........50....--....60-------.........70-----.......--..80........90...--....----------------------.100---........110-.....--....120.......130.......140.....----..------..150.......160.......170----.------.......180----..--.......190.......200.......210---.........220....-...230........240.......250......--.260.......270.--.....--.280.......290.......300.......-----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------
M
K
I
Y
L
D
V
I
---
W
L
L
N
F
C
F
D
A
L
L
L
L
L
T
------------
A
F
I
L
K
R
H
V
K
K
R
RLVGG-AFIG
S
S
I
V
L
L
M
FTPF
S
--
P
I
V
EH--------PA
G
K
L
A
F
S
V
V
------
I
V
V
VTF
G
--
F
K
R
F
R
F
F
F
Q
N
L
F
S
F
Y
F
A
--
T
F
L
M----------------------G
G
G
----
I
I
G
A
H
S
L
L
Q---SNSIV--QN
G
V
M
I
TNQTGFGDP
I
S
W
L
F
I
VGG
F
--
P
A
L
W
F
----
F
S
------KRRIEDIETKN
I
Q
Y
E
E
R
V
S
V
Q
ADL-----G------S
Q
T
L
H
V
R
G
------
L
I--DSGNQLYDPLTKT
P
V
M
I
I
Y
IDKLEPIFG-----TA
E
T
M
I
I
RNT
D
P
L
E
A
I
-
E
Q
L
D
D
-
S
F
R
F
L
D
KMRLIPYRGVGQQ
N
Q
F
L
L
C
VK--PD
H
V
T
I
M
T
K
E
EMISA--D
K
C
L
I
--
G
I
S
T
T
K
LSADGEF
D
A
I
IHPKMLSGKAVKHVS-----------------------------------------
25
Fugue
70.04
14%
-118
- C1 -
1ECX
2
?
A:
[1-376]
---------------------------------------------------------
M
R
V
Y
F
D
N
N
ATT
R
V
D
D
R
V
L
E
E
M
I
V
F
Y
R
EKYGNPNSAH
G
M
G
I
E
A
N
L
H
M
E
K
A
R
E
K
V
A
-
K
V
L
G
V
S
P
S
E
I
F
F
T
S
C
A
--
T
E
S
I
N
--------
W
I
L
K
T
V
A
E
T
F
EKRKR
T
I
I
T
T
P
I
E
--
H
K
A
V
L
E
T
M
K
Y
L
S
M
K
G
F
K
--
V
K
Y
V
P
V
D
-------------------
S
R
G
----
V
V
K
L
E
E
L
E
K
L
VD
E
D
T
F
L
--
V
S
I
M
A
A
N
N
E
V
G
T
I
Q
P
V
E
D
V
T
R
I
V
K
K
K
N
K
E
T
L
V
----
H
V
DAVQTI
G
K
I
P
F
S
L
E
K
L
E
V
---
D
Y
A
S
F
S
A
H
K
FHGPK
G
------
V
G
I
T
Y
I
R
K
G
V
P
I
R
P
L
I
--
H
G
G
G
Q
E
R
G
L
R
S
G
T
Q
-------
N
V
P
G
I
V
G
-----
A
A
R
A
M
E
I
A
V
E
E
L
S
E
A
A
-
K
H
M
E
K
L
R
S
K
L
V
S
G
L
M
N
L
G
A
H
I
I
T
P
L
E
I
S
L
------
P
N
T
L
S
V
S
F
P
N
--
I
R
G
--
S
T
L
Q
N
--
L
L
S
G
Y
G
I
Y
V
S
T
H
V
L
D
A
M
G
V
D
R
R
I
A
Q
G
A
I
R
I
S
L
CKYNT
E
E
E
V
D
Y
F
L
K
K
I
E
E
I
L
S
F
L-----------------
20
Fugue
64.59
17%
-106
- C3 -
5AEX
2
MEP2_YEAST
A:
[2-457]
S
Y
N
F
T
G
TPTGEGTGGNSLTTDLNTQFD
L
A
N
M
G
W
I
G
V
A
S
A
G
V
W
I
M
V
P
G
I
G
L
L
Y
S
G
L
SR
K
K
H
A
L
S
L
L
---
W
A
S
M
M
A
S
A
V
C
I
F
Q
W
F
F
W
G
Y
--------
S
L
A
F
S
H
N
T
R
G
N
G
F
I
G
T
L
E
F
F
G
F
R
N
V
L
G
A
P
S
S
V
S
SL
P
D
I
L
F
--------
A
V
Y
Q
G
M
F
A
A
V
------
T
G
A
L
M
L
G
G
A
C
E
R
A
R
L
F
P
M
M
V
F
L
F
L
W
M
--
T
I
V
Y
C
P
I
A
C
W
VWNAEG
W
L
V
K
L
G
S
L
D
Y
A
G
G
LCVH
L
T
S
G
H
G
G
L
V
---
Y
A
L
I
L
GK
R
N
D
P
V
T
R
K
G
M
P
K
Y
K
P
H
S
V
T
S
V
V
L
G
T
--
V
F
L
W
F
G
W
M
F
F
N
------
G
G
S
A
G
N
A
T
I
R
A
W
Y
S
I
M
S
T
N
L
A
A
A
C
-----
G
------
G
L
T
W
M
V
I
D
------
Y
F
--
R
C
G
R
K
-
W
T
T
V
G
L
C
S
G
I
I
A
G
L
V
G
I
T
P
A
A
G
FVPIW
S
A
V
V
I
G
V
V
T
G
A
G
C
N
L
A
-
V
D
L
K
S
-
L
L
R
I
D
D
G
L
D
C
Y
S
I
H
G
V
G
G
C
I
G
S
V
L
T
G
I
F
A
A
D
Y
V
N
A
T
A
G
S
Y
I
S
P
I
--
D
G
G
W
I
NH
H
Y
K
Q
V
G
Y
Q
L
A
G
I
C
A
A
L
A
W
T
V
T
V
T
S
I
L
L
L
T
M
N
A
IPFLKLRLSADEEELGTDAAQIGEFTYEESTAYIPEPIRS
19
Fugue
56.34
16%
-123
- C3 -
4XLG
4
SLX1_CANGA
A:
[3-300]
-------------------------------------------------------------------------
E
F
Q
Q
I
P
D
F
Y
G
------------
C
Y
L
L
Q
S
-
I
S
K
R
Q
---
S
-
F
Y
I
G
S
T
P
-----
N
P
V
R
--
R
L
R
Q
H
N
GSLSRTK
R
D
G
T
R
P
W
E
M
V
------
A
I
V
Y
G
F
P
--
S
R
I
A
A
L
Q
F
Q
H
A
W
Q
H
----------------------------------------
G
T
R
Y
I
S
I
---
H
H
K
L
A
--
M
I
T
S
L
L
K
N
--------
E
Y
F
R
Y
M
D
----
L
T
L
H
F
----
F
N
-------
Q
K
V
E
E
I
W
K
N
D
-----
K
F
N
V
S
N
Y
T
-----
V
------
S
L
S
Q
D
A
L
T
------
E
I
--
N
N
D
-------
T
I
D
D
I
M
D
V
N
E
K
N
M
E
L
V
Q
N
-----
L
Y
S
T
T
L
A
E
K
T
K
T
L
L
L
Y
K
E
K
I
D
T
-
G
I
N
T
C
Q
F
C
N
K
I
I
K
H
N
N
I
S
E
N
L
F
A
F
C
R
D
--
T
S
C
T
F
V
S
H
L
A
C
A
Y
R
Y
F
M
S
E
D
T
I
--
I
P
Q
S
P
K
C
P
K
C
Y
T
L
L
K
W
C
D
V
I
Y
Y
S
I
K
L
N
K
--------------------------------------------
5
PsiBlast_PDB
50.21
24%
-178
- C3 -
3M6E
2
UT_DESVH
A:
[201-289]
------------------------------------------------------------------------------
V
I
F
V
V
------------
A
I
L
V
N
S
R
I
S
A
L
F
A
V
I
G
-
S
L
V
G
L
C
T
A
L
I
M
H
S
P
E
T
--
P
V
-----------
R
L
G
L
Y
G
F
N
S
V
------
L
C
G
I
A
M
G
--
G
I
---
F
F
Y
L
N
I
R
T
F
L
Y
A
L
G
C
M
V
L
----------------------
G
A
I
----
A
T
G
A
F
S
V
L
L
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.33
24%
-181
- C3 -
3K3F
2
UT_DESVH
A:
[201-289]
------------------------------------------------------------------------------
V
I
F
V
V
------------
A
I
L
V
N
S
R
I
S
A
L
F
A
V
I
G
-
S
L
V
G
L
C
T
A
L
I
M
H
S
P
E
T
--
P
V
-----------
R
L
G
L
Y
G
F
N
S
V
------
L
C
G
I
A
M
G
--
G
I
---
F
F
Y
L
N
I
R
T
F
L
Y
A
L
G
C
M
V
L
----------------------
G
A
I
----
A
T
G
A
F
S
V
L
L
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
49.12
24%
-178
- C3 -
3K3G
3
UT_DESVH
A:
[201-289]
------------------------------------------------------------------------------
V
I
F
V
V
------------
A
I
L
V
N
S
R
I
S
A
L
F
A
V
I
G
-
S
L
V
G
L
C
T
A
L
I
M
H
S
P
E
T
--
P
V
-----------
R
L
G
L
Y
G
F
N
S
V
------
L
C
G
I
A
M
G
--
G
I
---
F
F
Y
L
N
I
R
T
F
L
Y
A
L
G
C
M
V
L
----------------------
G
A
I
----
A
T
G
A
F
S
V
L
L
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.11
24%
-171
- C3 -
3ME1
-
UT_DESVH
A:
[198-286]
------------------------------------------------------------------------------
V
I
F
V
V
------------
A
I
L
V
N
S
R
I
S
A
L
F
A
V
I
G
-
S
L
V
G
L
C
T
A
L
I
M
H
S
P
E
T
--
P
V
-----------
R
L
G
L
Y
G
F
N
S
V
------
L
C
G
I
A
M
G
--
G
I
---
F
F
Y
L
N
I
R
T
F
L
Y
A
L
G
C
M
V
L
----------------------
G
A
I
----
A
T
G
A
F
S
V
L
L
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
38.26
20%
-93
- C2 -
2LU7
-
A:
[1-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
V
R
S
T
P
G
G
D
L
E
L
V
V
H
L
S
G
P
GG
P
V
R
W
Y
----
K
D
------
G
E
R
L
A
S
--------
Q
G
R
V
Q
L
E
Q
A
G
-----
A
------
R
Q
V
L
R
V
Q
G
------
A
R
SG
D
A
G
E
Y
L
C
D
A
P
Q
D
S
R
I
F
L
V
S
V
E
E
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
37.10
32%
-145
- C4 -
3SLZ
2
?
A:
[24-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
T
L
K
V
-----
G
------
G
Q
--
P
V
T
F
------
L
V
--
D
T
G
A
Q
H
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
34.71
15%
-245
- C4 -
2HAH
1
A:
[16-35]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
I
F
V
-----
N
------
G
--
Y
P
I
K
F
------
L
L
--
D
T
G
A
D
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.07
17%
-177
- C4 -
3S8I
2
DDI1_HUMAN
A:
[23-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
Y
I
N
C
K
V
-----
N
------
G
H
--
P
L
K
A
------
F
V
--
D
S
G
A
Q
M
T
---------
I
M
S
Q
A
C
A
E
R
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.31
17%
-131
- C4 -
2JYS
-
POL_SFV1
A:
[8-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
L
E
A
E
I
-----
K
------
G
T
--
K
L
K
A
------
H
W
--
D
S
G
A
T
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
31.86
21%
-95
- C4 -
2RSP
-
GAG_RSVP
A:
[10-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
L
V
R
V
I
L
T
N
-----
T
GSHPVK
Q
R
S
V
Y
I
T
A
------
L
L
--
D
S
G
A
D
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
31.81
24%
-33
- C3 -
2ATM
2
HUGAA_VESVU
A:
[44-113]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
K
I
A
I
F
Y
D
P
G
E
F
--
P
A
L
--------------------
L
S
L
K
D
G
K
Y
K
K
R
N
G
G
V
P
Q
E
-----
G
------
N
I
T
I
H
L
Q
K
------
F
I
--
E
N
L
D
K
I
Y
P
N
R
N
F
S
G
I
G
V
I
D
F
E
R
W
R
P
I
F
----------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
30.94
25%
-172
- C4 -
3SQF
-
VPRT_MPMV
A:
[12-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
L
W
L
-----
D
------
D
--
K
M
F
T
G
------
L
I
--
N
T
G
A
D
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
30.04
32%
-162
* C4 *
3EC0
2
POL_HV2RO
A:
[11-29]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
A
Y
I
-----
E
------
G
--
Q
P
V
E
V
------
L
L
--
D
T
G
A
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
28.07
9%
-132
- C4 -
5C9F
-
?
A:
[20-53]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
F
Y
I
N
A
F
V
-----
N
------
N
V
--
K
I
K
F
------
M
V
--
D
T
G
A
S
D
I
---------
A
L
T
K
E
D
A
Q
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
24.45
9%
-114
- C4 -
1FMB
1
A:
[10-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
I
V
L
I
-----
N
------
D
T
P
--
L
N
V
------
L
L
--
D
T
G
A
D
T
S
---------
V
L
T
T
A
H
Y
N
R
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.65
25%
-71
- C4 -
2HS1
2
A:
[11-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
I
K
I
-----
G
------
G
--
Q
L
K
E
A
------
L
L
--
D
T
G
A
D
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
20.98
26%
4
* C3 *
2OQQ
-
HY5_ARATH
A:
[1-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
S
A
Y
L
S
----
E
L
------
E
N
R
V
K
D
L
E
N
K
N
S
E
L
E
E
R
L
S
T
L
Q
N
E
-----
N
------
Q
M
L
R
H
I
L
K
------
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------