@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu16910: (2016-06-26 )
MSLDDLQAATKIQKRYLTALEEGNYDIIPGKFYVRAFIKQYAEAVGLDADQLFEEHKKDIPNTYHDDVSEKISGMNLQKEMPKPASKALELLPTILVILGVIVVIAIVYAIIQFANHKNSDDHNAASEKAITQSESKYEIPKDSTLKENQNNSSEKETDTKKETKENEDKKKENDSEKLEIKAAGTEGSLTTYEVSGADKIELELKASDSSWIRVRDENSSSLKEGTLKKDETYKKDITDQKQVDIRTGYAPNLKIKINGKVLSYELDPKKVMAQTIKIVNKKEEKSS
Atome Classification :
(20 SA)
-------------------------..---.......-----10..--......20---------...-.....30........40-......---..50........60........70........80........90..----------------------......100.......110....-------------...120.......130..-----...-------------..140......-----.150....-...160.......170.......180.......190.......200..-.....210--.........220.......230.---......240--.........250.......260..------.....270.....-------..280......-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------M
S
---
L
D
D
L
Q
A
A
-----
T
K
I
Q
--
K
R
Y
L
T
A
L
E---------EGN-
Y
D
II
P
G
K
F
Y
V
R
A
F
I
K
Q
Y
-
A
E
A
VGL---
D
A
D
Q
L
F
E
E
H
K
K
DIPN
T
Y
H
D
D
V
S
E
K
I
SGMN
L
Q
K
EMPK
P
A
S
K
A
L
E
L
L
P
----------------------
T
I
L
V
I
L
G
V
I
V
V
I
A
I
V
Y
A
I
I
Q
F
AN-------------HKNSDDHNAASEKAITQS-----ESK-------------YEIPKDSTLKE-----NQNNSSEK-ETDTKKETKENEDKKKENDS
E
K
L
E
I
K
A
AGTEG
S
L
T
T
Y
E
VSGA
D
K
I
E
L
E
-
L
KASDS----
S
W
I
R
V
RDENSSSLKEGTLKKD
E
T
---
Y
KKDITD----Q
K
Q
V
D
I
RTGYAP
N
L
K
I
K
IN
G
K
V
L
S
------
Y
EL
D
P
K
K
V
M
A
Q
T
I
-------
K
I
V
N
K
K
EEKSS-------------------------
21
Fugue
66.36
31%
-151
- C1 -
3FYM
1
?
A:
[2-83]
----------KT
V
G
E
A
L
K
G
R
R
E
R
L
G
M
T
---
L
T
E
L
E
Q
R
-----
T
G
I
K
--
R
E
M
L
V
H
I
E
---------
N
N
E
-
F
D
Q
L
P
N
K
N
Y
S
E
G
F
I
R
K
Y
-
A
S
V
V
N
I
---
E
P
N
Q
L
I
Q
A
H
Q
D
E
I
P
S
N
Q
A
E
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
61.29
19%
-27
* C2 *
4KRT
10
?
A:
[7-353]
H
H
H
H
H
M
Q
SRNNN
N
L
K
G
I
D
V
S
NWKGN
I
N
---
F
E
S
V
K
N
------
D
G
V
E
--
V
V
Y
I
K
A
T
E
GNYFKDKY
A
K
Q
N
-
Y
E
G
A
K
E
Q
G
L
S
V
G
F
Y
H
F
F
R
A
N
K
G
A
K
---
D
Q
A
N
F
F
I
D
Y
L
N
E
I
G
A
V
N
Y
D
C
K
L
A
L
D
I
E
T
T
E
G
V
G
V
R
D
L
T
S
M
C
I
E
F
L
E
----------------------
E
V
K
R
L
T
G
K
E
V
V
---
V
Y
T
Y
T
S
F
A
N
-------------
N
N
-
L
D
S
R
L
G
N
Y
P
V
W
I
A
H
Y
-----
G
V
N
TPGANNIWSSWVG
F
Q
Y
S
E
N
G
S
V
A
G
VN
G
G
C
D
M
N
E
F
T
E
E
I
F
I
D
S
S
N
F
N
L
D
N
A
T
T
K
--
N
V
S
T
K
L
N
I
R
A
K
G
T
T
N
S
K
I
I
G
S
I
P
A
G
E
T
F
K
I
K
W
V
D
E
D
Y
L
----
G
W
Y
Y
V
E
Y
N
G
----
V
V
G
Y
V
N
A
D
Y
V
---
E
K
L
Q
M
A
T
T
Y
NV
S
T
F
L
N
V
R
E
E
--
G
S
L
N
S
R
I
V
D
K
I
N
S
G
D
I
F
R
I
D
W
V
D
S
D
F
I
G
W
Y
R
I
TTKNG
K
V
G
F
V
N
A
E
F
V
K
K
L
-------------------------
1
PsiBlast_PDB
60.91
31%
-148
- C1 -
3FYM
1
?
A:
[17-83]
-------------------------
M
T
---
L
T
E
L
E
Q
R
-----
T
G
I
K
--
R
E
M
L
V
H
I
E
---------
N
N
E
-
F
D
Q
L
P
N
K
N
Y
S
E
G
F
I
R
K
Y
-
A
S
V
V
N
I
---
E
P
N
Q
L
I
Q
A
H
Q
D
E
I
P
S
N
-
Q
A
E
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
60.58
34%
-163
- C1 -
3FYM
1
?
A:
[17-78]
-------------------------
M
T
---
L
T
E
L
E
Q
R
-----
T
G
I
K
--
R
E
M
L
V
H
I
E
---------
N
N
E
-
F
D
Q
L
P
N
K
N
Y
S
E
G
F
I
R
K
Y
-
A
S
V
V
N
I
---
E
P
N
Q
L
I
Q
A
H
Q
D
E
I
P
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
59.68
15%
-54
- C1 -
5DJ4
1
SESN2_HUMAN
A:
[66-480]
--------------------GL
E
A
L
M
S
SGR
V
D
N
L
A
V
V
-----
M
G
L
H
--
P
D
Y
F
T
S
F
W
---------
R
L
H
-
Y
L
L
L
H
T
D
G
P
L
A
S
S
W
R
H
Y
-
I
A
I
M
A
A
A
R
H
Q
C
S
Y
L
V
G
S
H
M
A
E
F
L
Q
T
G
G
D
--
P
E
W
L
L
G
L
H
R
A
P
E
K
L
R
K
L
S
E
I
N
K
L
L
A
HRPWLIT
K
E
H
I
Q
A
L
L
KTGE
H
T
W
S
L
A
E
L
I
Q
A
L
V
L
L
T
H
C
H
S
L
S
S
F
V
F
G
C
GILPEGDPPSE
Q
S
S
P
R
D
V
E
A
L
M
E
R
M
Q
Q
L
Q
E
SEE
M
E
S
R
-------------
F
E
L
E
K
S
E
S
L
P
D
-----
M
L
C
F
V
E
D
P
-
T
F
G
Y
E
D
F
T
R
R
G
A
Q
A
P
P
T
F
R
A
Q
D
Y
T
W
E
D
H
G
Y
S
L
I
Q
R
L
Y
-
P
E
G
G
Q
L
L
D
E
K
-
F
Q
A
A
Y
S
LTYN
T
I
A
M
H
S
G
V
D
T
S
V
L
R
R
A
I
W
N
Y
I
H
C
V
F
G
I
R
Y
D
D
Y
D
----
Y
G
E
V
N
Q
L
--
L
E
R
N
L
K
V
Y
I
K
T
V
A
C
Y
------
P
E
K
T
T
R
R
M
Y
N
L
F
W
-------
R
H
F
R
H
S
E
K
V
H
V
N
L
L
L
L
E
A
R
M
Q
A
A
L
L
Y
A
L
R
A
I
T
R
Y
M
T
35
HHSearch
53.72
17%
-184
* C1 *
2B5A
1
?
A:
[24-75]
-------------------------
V
S
---
Q
E
E
L
A
D
L
-----
A
G
L
H
--
R
T
Y
I
S
E
V
E
---------
R
G
D
-
R
--
N
I
S
----
L
I
N
I
H
K
I
-
C
A
A
L
D
I
---
P
A
S
T
F
F
R
K
M
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
53.32
27%
-177
- C1 -
3VK0
-
?
A:
[35-83]
-------------------------
W
S
---
Q
E
E
L
A
R
Q
-----
C
G
L
D
--
R
T
Y
V
S
A
V
E
---------
R
K
R
-
W
-
N
I
-----
A
L
S
N
I
E
K
M
-
A
A
A
L
G
V
---
A
A
Y
Q
L
L
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
53.14
21%
-214
- C- -
2OFY
-
?
A:
[28-80]
-------------------------
M
S
---
M
V
T
V
A
F
D
-----
A
G
I
S
--
V
E
T
L
R
K
I
E
---------
T
G
R
-
I
A
T
-
P
A
----
F
F
T
I
A
A
V
-
A
R
V
L
D
L
---
S
L
D
D
V
A
A
V
V
T
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
53.02
25%
-134
- C1 -
2WUS
-
?
R:
[21-80]
-------------------------
I
T
---
L
L
D
A
S
L
F
-----
T
N
I
N
--
P
S
K
L
K
R
I
E
---------
E
G
D
-
L
K
G
L
D
A
E
V
Y
I
K
S
Y
I
K
R
Y
-
S
E
F
L
E
L
---
S
P
D
E
M
L
K
L
Y
E
E
G
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.82
28%
-159
- C1 -
2WUS
-
?
R:
[21-73]
-------------------------
I
T
---
L
L
D
A
S
L
F
-----
T
N
I
N
--
P
S
K
L
K
R
I
E
---------
E
G
D
-
L
K
G
L
D
A
E
V
Y
I
K
S
Y
I
K
R
Y
-
S
E
F
L
E
L
---
S
P
D
E
M
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
51.53
12%
-204
- C1 -
3B7H
-
?
A:
[21-70]
-------------------------
L
T
---
I
N
R
V
A
T
L
-----
A
G
L
N
--
Q
S
T
V
N
A
M
F
---------
E
G
R
-
S
K
R
P
T
-----
I
T
T
I
R
K
V
-
C
G
T
L
G
I
---
S
V
H
D
F
F
D
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
51.48
15%
-201
- C1 -
4PU7
-
HIPB_SHEON
B:
[43-87]
-------------------------
L
T
---
Q
D
V
A
A
M
L
-----
C
G
V
T
--
K
K
T
L
I
R
V
E
---------
K
G
E
---
D
V
Y
-----
I
S
T
V
F
K
I
-
L
D
G
L
G
I
---
D
I
V
S
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
51.45
15%
-146
- C1 -
3G5G
-
?
A:
[22-73]
-------------------------
M
T
---
Q
E
D
L
A
Y
K
-----
S
N
L
D
--
R
T
Y
I
S
G
I
E
---------
R
N
S
-
R
N
-
L
T
-----
I
K
S
L
E
L
I
-
M
K
G
L
E
V
---
S
D
V
V
F
F
E
M
L
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
51.28
10%
-185
- C1 -
3KZ3
-
RPC1_LAMBD
A:
[30-81]
-------------------------
L
S
---
Y
E
S
V
A
D
K
-----
M
G
M
G
--
Q
S
A
V
A
A
L
F
---------
N
G
I
-
N
A
-
L
N
-----
A
Y
N
A
A
L
L
-
A
K
I
L
K
V
---
S
V
E
E
F
S
P
S
I
A
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
49.41
15%
-131
- C1 -
4I6R
3
?
A:
[25-76]
-------------------------
M
T
---
Q
E
D
L
A
Y
K
-----
S
N
L
D
--
R
T
Y
I
S
G
I
E
---------
R
N
S
-
R
N
------
L
T
I
K
S
L
E
L
I
-
M
K
G
L
E
V
---
S
D
V
V
F
F
E
M
L
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
49.31
22%
-168
- C1 -
3R1F
-
ESPR_MYCTU
A:
[24-78]
-------------------------
H
T
---
S
A
E
V
I
A
A
L
K
A
E
G
I
T
M
S
--
A
P
Y
L
S
Q
L
R
---------
S
G
N
R
T
--
N
P
S
G
----
A
T
M
A
A
L
-
A
N
F
F
R
I
---
K
A
A
Y
F
T
D
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
49.26
12%
-131
- C1 -
3BS3
2
?
A:
[24-71]
-------------------------
R
T
---
N
R
W
L
A
E
Q
-----
M
G
K
S
--
E
N
T
I
S
R
W
C
---------
S
N
K
-
S
-
Q
P
S
-----
L
D
M
L
V
K
V
-
A
E
L
L
N
V
---
D
P
R
Q
L
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
48.51
15%
-134
- C1 -
3KXA
10
?
A:
[82-135]
-------------------------
F
T
---
Q
S
E
L
A
T
A
-----
A
G
L
P
--
Q
P
Y
L
S
R
I
E
---------
N
S
K
-
Q
S
--
L
----
Q
D
K
T
V
Q
K
L
-
A
N
A
L
G
V
---
S
P
L
E
V
R
A
A
F
E
R
R
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
47.07
19%
-133
- C1 -
1ZUG
-
RCRO_BP434
A:
[17-64]
-------------------------
M
T
---
Q
T
E
L
A
T
K
-----
A
G
V
K
--
Q
Q
S
I
Q
L
I
E
---------
A
G
V
-
T
---
K
----
R
P
R
F
L
F
E
I
-
A
M
A
L
N
C
---
D
P
V
W
L
Q
Y
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
44.88
15%
-156
- C1 -
2EWT
2
?
A:
[22-70]
-------------------------
L
S
---
L
H
G
V
E
E
K
-----
S
Q
G
R
WK
A
V
V
V
G
S
Y
E
---------
R
G
D
-
R
A
--
V
T
V
----
Q
R
L
A
E
L
-
A
D
F
Y
G
V
---
P
V
Q
E
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------