@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu17530: (2016-06-28 )
MNLIGYIEERFQNLELIPSIYNQWGTGIHFCLGENIYQLKANEELNLKMFRIVYEQTSIIFNELFEQNDDIFLVTNMYKHKKKEKCIRKLKVYQPFLKCKNHLNQIMVKTYPYPFEINKAEEYEMQQFSLLCKPRDLRVTELLKAASNEDFPQKPKFGGYSIDYPDVFFVNITKDIIFFIYDDRGCEVIAHDFKRIRPLYEKYHDWVEEYKCM
Atome Classification :
(20 SA)
-----------------------------------------------------------------.........----10........20.....-------...30.......--.--40-.---....-----...---50........60-----.....----------...70........80........90--....----....100-.......110...-------------------------------------....120---------.........130------------.......140.--------......150....-..--.160..---..-...170-...-----------......180..-..-...190------.---........200...--...-----.210.----------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------M
N
L
I
G
Y
I
E
E
----
R
F
Q
N
L
E
L
I
P
S
I
Y
N
Q
WGT-------
G
I
H
F
CLGE
N
I
Y
Q
--L--KA-N---EEL
N
-----
L
K
M
---
F
R
I
V
Y
E
Q
T
S
I
I
F
-----
N
E
L
FE----------QND
D
I
F
L
V
T
N
M
Y
K
H
K
K
K
E
K
C
I
R
K
L
K
--
V
Y
Q
P
----
F
L
K
C
K
N
H
-
L
N
Q
I
M
V
KTYPYPF-------------------------------------EIN
K
A
-----------
E
E
Y
E
M
Q
Q
F
S
L
LC------------KPRD
L
R
V
T
E
L
L
--------
K
A
ASNEDFPQKPK-FG--GYSIDY---P
D
-
V
F
F
V
---
N
IT-----------K
D
I
I
F
F
I
YDDR-G
C
-
E
V
I
A
--------
H
---
D
F
K
R
I
R
P
L
Y
E
K
Y
H
D
--
W
V
E
-----
E
YKCM----------------------------------------------------------------------------------------
40
Fugue
66.70
18%
-92
- C5 -
4OVY
9
?
A:
[1-305]
-------------------------------------------------EEPLPSWNDS
A
A
R
R
A
I
L
E
Y
V
K
S
V
T
T
EGSP
R
F
V
P
V
S
E
R
I
V
T
F
D
N
D
G
T
LWCEQPM
Y
V
Q
L
A
F
A
L
D
R
V
R
--
L
--
L
A
-
D
---
K
H
P
E
-----
W
R
T
EE
P
F
R
A
V
I
E
K
D
L
P
A
L
A
K
LG
A
K
G
L
T
E
L
T
M
A
T
HAGMT
D
D
E
F
E
N
I
V
T
E
W
I
R
K
A
R
H
P
K
F
H
R
P
Y
T
EC
V
Y
Q
P
M
L
E
L
L
A
F
L
R
Q
H
E
F
K
T
F
I
V
S
G
A
G
I
E
F
M------------------------------------
R
P
W
A
K
-----------
E
V
Y
G
I
P
P
E
Q
V
I
G
S
S
V
K
L
K
Y
E
L
R
DG
K
P
V
L
V
R
L
A
E
L
N
FIDD
Q
A
G
K
P
V
G
I
R
Q
V
I
G
R
R
P
V
M
A
V
--
G
N
S
D
G
D
---
Y
E
M
L
E
Y
V
TSG
P
A
N
-----------
G
L
G
L
I
V
H
H
T
D
A
-
V
R
-
E
F
A
Y
--------
D
RQS
P
F
G
R
L
D
R
A
L
T
D
A
T
S
KG
W
I
V
I
DMQR
D
W
K
V
I
FPES------------------------------------------------------------------------------------
37
Fugue
62.88
19%
-107
- C4 -
4RNZ
9
?
A:
[1-369]
M
E
R
L
V
W
D
KLT
L
L
G
F
L
E
K
N
HIPQ
K
L
Y
Y
N
LS
S
Q
D
K
E
L
S
A
E
IQSN
V
T
Y
Y
T
L
R
D
ANNTLI
Q
A
L
I
P
ISQD
L
Q
I
H
I
Y
K
K
G
----
E
D
Y
F
L
D
F
I
P
I
I
F
T
R
K
E
K
-------
T
L
L
L
S
L
Q
T
S
P
Y
Q
D
I
I
--
K
A
T
N
---
D
P
L
L
-----
A
N
Q
---
L
M
N
A
Y
K
K
-
S
V
P
F
-----
K
R
L
-
V
----------
K
N
D
K
I
A
I
V
Y
T
R
D
Y
R
V
G
--
Q
A
F
G
Q
P
T
--
I
K
M
A
----
M
V
S
S
R
S
N
-
Q
Y
Y
L
F
S
H
S
N
G
H
Y
Y
-------------------------------------
D
-
S
K
A
-----------
Q
E
V
A
G
F
---
L
L
E
------------
T
P
--
V
K
Y
T
R
I
S
--------
S
P
F
S
Y
G
R
F
-
H
R
P
H
-
Y
G
-----
V
D
Y
A
A
K
H
G
-
S
L
I
H
---
S
A
S
-----------
D
G
R
V
G
F
M
G
V
K
A
-
G
Y
G
K
V
V
E
--------
I
---
H
L
N
E
L
R
L
V
Y
A
H
M
S
A
--
F
A
N
-----
G
L
K
K
G
S
F
V
K
KGQII
G
R
V
G
STG
P
H
L
H
F
G
V
Y
K
NSRPINPLGYIRT
A
K
S
K
L
H
G
K
Q
R
E
V
F
L
E
K
A
Q
R
S
K
Q
K
L
E
E
L
L
K
T
H
SFEKNSFYLLEGFLEHHHH
25
PsiBlast_CBE
52.83
32%
-87
- C6 -
2RFB
1
?
B:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
D
I
L
N
H
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.80
32%
-88
- C6 -
2RFB
2
?
A:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
D
I
L
N
H
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
52.48
32%
-86
- C6 -
2RFC
1
?
A:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
D
I
L
N
H
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
52.02
7%
-267
- C- -
4OI3
-
?
A:
[40-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
W
A
---
D
P
A
-----------
S
G
T
I
Y
C
L
S
E
---------
G
--------
P
---
S
A
E
A
V
Q
R
V
H
E
R
----------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
51.81
32%
-98
- C6 -
2RFC
1
?
C:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
DILNH
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
50.12
32%
-87
- C6 -
2RFC
1
?
B:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
DILNH
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
49.70
32%
-93
- C6 -
2RFB
1
?
C:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
D
I
L
N
H
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
49.68
32%
-116
- C6 -
2RFC
1
?
D:
[287-342]
-------------------------------------------------------------------------------------------
A
F
G
I
-------
G
I
H
M
C
L
G
A
P
L
A
R
--
L
--
E
A
-
S
---
I
A
L
N
DILNH
F
K
R
---
I
K
I
D
Y
K
K
S
R
L
L
D
-----
N
K
M
V
L
----------
G
Y
D
K
L
F
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
45.64
12%
-128
- C5 -
1EFV
1
ETFA_HUMAN
A:
[2-313]
----------------------------Q
S
T
L
V
I
A
E
H
A
NDSLA
P
I
T
L
N
T
I
T
A
A
T
R
L
G
G
E
V
S
C
L
V
A
G
T
K
C
D
K
V
A
Q
----
D
L
C
K
V
A
G
I
A
K
V
L
V
A
Q
H
D
-------
V
Y
K
G
L
L
P
E
E
L
T
P
--
L
I
L
A
T
-
Q
---
K
Q
F
N
-----
Y
T
H
---
I
C
A
G
A
S
A
F
G
K
N
L
-----
L
P
R
V
A
----------
A
K
L
E
V
A
P
I
S
D
I
I
A
I
K
S
P
D
T
F
V
R
T
I
Y
--
A
G
N
A
----
L
C
T
V
K
C
D
-
E
K
V
K
V
F
S
V
R
G
T
S
F
DAAATSG
G
S
A
S
S
E
K
A
SSTSPVEI
S
E
W
L
D
QKLTKSDRP
E
L
T
G
A
K
V
V
V
S
G
G
RGLK
S
G
E
N
F
K
L
L
Y
D
L
A
------------
D
Q
L
H
A
A
V
G
A
S
R
--------
A
A
V
D
A
G
F
V
P
N
D
M
Q
-
V
G
QT
G
K
I
V
A
P
---
E
L
-
Y
I
A
V
---
G
I
S
GA
I
Q
H
L
A
G
MKD
S
K
T
I
V
A
I
N
K
D
P
-
E
A
-
P
I
F
Q
--------
V
A--
D
Y
G
I
V
A
D
L
F
K
V
V
P
E
--
M
T
E
-----
I
L
K
------------------------------------------------------------------------------------------
39
Fugue
45.54
12%
-17
- C3 -
1ODH
4
GCM1_MOUSE
A:
[14-170]
-----------------------------------------------------------------
L
S
W
-
D
I
N
D
V
----
K
L
P
Q
N
V
K
T
T
D
W
F
Q
E
W
P
D
-------
S
-------
Y
V
K
H
--
I
--
Y
S
-
S
---
D
D
R
N
-----
A
Q
------------------------------------
R
H
L
S
S
W
A
M
R
N
T
N
N
H
N
S
R
I
L
K
K
S
C
L
G
--
V
V
V
C
----
S
R
D
C
S
T
E
-
E
G
R
K
-
I
Y
L
R
P
A
I
C
-------------------------------------
D
K
A
R
Q
-----------
K
Q
Q
R
K
S
-----
C
------------
P
N
C
N
G
P
L
K
L
I
---------------------
P
-
C
R
--
G
H
G
-
G
F
---
P
V
-
T
N
F
W
---
R
H
D
-----------
G
R
F
I
F
F
Q
S
K
G
--------
E
--------
H
---
D
H
P
R
P
E
T
K
L
E
A
E
A
R
--
R
A
M
-----
K
--------------------------------------------------------------------------------------------
28
HHSearch
44.33
23%
-245
- C6 -
2N2H
-
SIN3A_MOUSE
B:
[667-709]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
A
L
Q
R
I
Y
A
D
K
-
A
A
-
D
I
I
D
G
L
R
K
NPSI
A
---
V
P
I
V
L
K
R
L
K
M
K
E
E
E
--
W
R
E
--------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.92
41%
-250
- C6 -
4P6Y
-
?
A:
[152-190]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
S
G
F
V
---
E
V
S
-----------
G
K
Y
V
S
K
A
M
D
D
R
I
G
C
-
A
V
I
V
--------
E
---
V
F
K
R
I
K
P
A
V
T
L
Y
---------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.84
41%
-240
- C6 -
3ISX
2
?
A:
[164-202]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
S
G
F
V
---
E
V
S
-----------
G
K
Y
V
S
K
A
M
D
D
R
I
G
C
-
A
V
I
V
--------
E
---
V
F
K
R
I
K
P
A
V
T
L
Y
---------------------------------------------------------------------------------------------------------
35
HHSearch
43.57
43%
-358
- C7 -
4LMS
2
?
C:
[9-22]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
T
I
F
D
A
R
-
G
C
-
K
D
H
A
---------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.73
37%
-138
- C6 -
3B4X
1
CP119_SULTO
A:
[304-340]
--------------------------------------------------------------------------------------
P
N
P
H
L
S
F
G
S
-------
G
I
H
L
C
L
G
A
P
L
A
R
--
L
--
E
A
-
R
---
I
A
L
E
E
F
---
A
K
K
---
F
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
42.62
31%
-184
- C6 -
1IO8
1
CP119_SULAC
A:
[304-354]
--------------------------------------------------------------------------------------
P
N
P
H
L
S
F
G
S
-------
G
I
H
L
C
L
G
A
P
L
A
R
--
L
--
E
A
-
R
I
A
I
E
E
F
S
-----
K
R
F
---
R
H
I
E
I
L
D
T
E
K
V
P
-----
N
E
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.66
27%
-55
- C6 -
4GGV
1
?
A:
[354-414]
--------------------------------------------------------------------------------------
P
N
P
H
F
G
F
G
R
-------
G
I
H
F
C
L
G
A
P
L
A
R
--
L
--
E
G
-
R
---
V
A
L
N
-----
A
L
F
---
D
R
F
P
V
L
R
T
D
P
A
K
-----
P
P
T
F
F
----------
P
T
P
D
M
I
G
V
N
T
L
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
39.66
30%
-204
- C6 -
2ZBY
1
CPXE_STRGO
A:
[348-389]
--------------------------------------------------------------------------------------------
F
G
F
-------
G
V
H
Q
C
L
G
Q
N
L
A
R
--
L
--
E
L
-
E
---
V
I
L
N
-----
A
L
M
---
D
R
V
P
T
L
R
L
A
V
P
V
-----
E
Q
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------