@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu17990: (2016-06-28 )
MVKRKANHVINGMNDAKSQGKGAGYIENDQLVLTEAERQNNKKRKTNQ
Atome Classification :
(18 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---.....20..---......30........40.......----------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKRK
A
N
H
V
INGMN---DAKSQGKGA---GYIEND
Q
L
V
L
T
E
A
E
RQNNKKRKTNQ----------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
75.62
23%
3
- C7 -
2B68
-
?
A:
[1-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
G
C
P
G
N
Q
L
K
C
N
N
---
H
C
K
S
I
S
C
R
A
---
G
Y
C
D
A
A
T
L
W
L
R
C
T
C
T
D
C
N
G
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
65.92
18%
106
* C4 *
1D6G
2
CCKAR_HUMAN
A:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
V
V
D
S
L
L
V
N
G
S
N
---
I
T
P
P
C
E
L
G
------
L
E
N
E
T
L
F
C
L
D
Q
P
R
P
S
K
E
W
Q
P
A
Q
V
I
LL-------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
60.45
27%
68
- C4 -
1NIX
1
A:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
K
G
F
G
K
S
C
V
P
G
K
N
---
E
C
C
S
--------
G
Y
A
C
N
S
R
----------
D
K
W
C
K
V
L
L
----------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.24
16%
93
- C7 -
4DVZ
-
CAGA_HELPY
A:
[308-829]
L
M
G
S
H
N
GK
V
S
L
L
YAGDKHD
W
N
A
T
V
G
Y
K
DNVAT
L
I
N
V
H
M
KNG
S
G
L
V
I
A
G
G
EKGINN
P
S
F
Y
L
Y
K
E
D
QLTG
S
Q
R
A
L
S
Q
E
E
I
R
N
K
V
D
F
M
E
F
L
A
Q
N
NTKLDNLS
E
K
E
K
E
K
F
Q
N
E
I
E
D
F
Q
K
DS
K
A
Y
L
D
A
L
G
N
D
R
I
A
F
V
S
KKDTKH
S
A
L
I
T
E
F
N
NG
D
L
S
Y
T
L
K
D
YE
K
N
V
T
L
Q
G
S
LKHDG
V
M
F
V
D
Y
SF
N
K
V
A
V
F
NLPDLNNLAITS
F
V
R
R
N
L
E
N
K
L
T
A
K
GLS
L
Q
E
A
N
K
L
I
K
D
F
L
S
S
N
K
E
L
A
G
K
A
L
N
F
N
K
A
V
A
E
A
K
S
T
GNY
D
E
V
K
K
A
Q
K
D
L
E
K
S
L
R
K
R
E
H
L
E
K
E
V
E
K
K
L
E
S
K
SGNKK
A
Q
A
N
S
Q
K
D
E
I
F
A
L
I
N
K
E
A
N
R
D
A
R
A
I
A
Y
T
Q
N
L
K
G
I
K
R
E
L
S
D
K
L
E
K
I
S
K
D
L
K
D
F
S
K
S
F
D
E
F
K
NFSKA
E
E
T
L
K
A
L
K
G
S
V
K
D
L
GIN
P
E
W
I
S
K
V
E
N
L
N
A
A
L
N
E
F
K
N
GDF
S
K
V
T
Q
A
K
S
D
L
E
N
S
V
K
D
V
I
I
N
Q
K
V
T
D
K
V
D
N
L
N
---
Q
A
V
S
V
A
K
A
M
---
G
D
F
S
R
V
E
Q
V
L
A
D
L
K
N
F
S
K
E
Q
L
A
Q
Q
A
Q
K--------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
59.09
20%
43
* C7 *
4LEU
-
PP266_ARATH
A:
[71-252]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
L
I
G
K
E
A
L
F
V
I
L
G
L
K
---
R
L
K
------------
E
D
D
E
K
L
D
K
F
I
K
T
H
V
F
R
L
L
K
L
D
M
L
A
V
I
G
E
L
E
R
Q
EE
T
A
L
A
I
K
M
F
E
V
I
Q
K
QEWYQPD
V
F
M
Y
K
D
L
I
V
S
L
A
K
S
KR
M
D
E
A
M
A
L
W
E
K
M
K
K
E
N
L
F
P
D
S
Q
T
Y
T
E
V
I
R
G
F
L
R
D
GC
P
A
D
A
M
N
V
Y
E
D
M
L
K
SPDPPEE
L
P
F
R
V
L
L
K
G
L
L
PH
P
L
L
R
N
K
V
K
K
D
F
E
E
L
F
P
EKHAYDPPEE
12
Fugue
56.65
20%
143
- C5 -
2C1M
-
NUP50_MOUSE
B:
[1-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
R
V
A
E
K
E
L
T
D
R
N
WDE
E
D
E
V
E
E
M
G
----
T
F
S
V
A
S
E
E
V
M
K
N
R
A
V
K
K
A
K
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
51.73
36%
14
* C5 *
1IEN
1
A:
[1-19]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
W
R
C
C
L
I
P
A
C
R
R
N
H
K
K
F
C
-------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
49.48
36%
-23
- C5 -
2LR9
-
A:
[1-19]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
W
R
C
C
L
I
P
A
C
R
R
N
H
K
K
F
C
-------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
46.17
16%
153
- C- -
1I1J
-
MIA_HUMAN
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMPKLAD
R
K
L
C
ADQECSHPI
S
M
A
V
A
L
Q
D
Y
M
APDCR
F
L
T
I
H
RG
Q
V
V
Y
V
F
S
K
L
K
G
R
G
R
L
F
W
G
G
S
V
---
Q
G
D
Y
Y
G
D
L
A
A
R
L
G
Y
F
P
S
S
I
V
R
E
D
Q
T
L
K
P
G
K
V
D
V
K
T
D
K
WDFYC-----------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.72
32%
105
- C6 -
4NPD
1
A:
[11-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
---
F
Y
E
I
L
H
L
P
N
L
T
E
E
Q
R
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
33.14
24%
80
* C6 *
3QWO
-
?
C:
[9-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
S
N
E
I
A
N
L
P
N
L
N
E
E
Q
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
33.04
57%
268
- C2 -
4ZBJ
-
D:
[8-14]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
Y
---
G
Y
D
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
30.53
28%
89
- C6 -
2LR2
-
?
A:
[24-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
---
F
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
-------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
28.54
45%
205
- C1 -
2MGX
-
SRA1_HUMAN
A:
[225-235]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
H
T
I
P
G
F
Q
---
Q
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
27.33
21%
141
- C6 -
1L6X
-
?
B:
[7-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
---
F
Y
E
A
L
H
D
P
N
L
N
E
E
Q
R
N
A
------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
26.42
21%
120
- C6 -
1ZDA
-
?
A:
[12-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
---
F
Y
E
A
L
H
D
P
N
L
N
E
E
Q
R
N
A
------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
17.77
30%
-
- C3 -
1M0F
-
?
B:
[2-63]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
L
T
K
N
Q
R
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.89
11%
193
- C6 -
2KZI
-
?
A:
[11-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
---
Y
W
E
I
A
L
L
P
N
L
N
N
Q
Q
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------