@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18019: (2016-06-28 )
MKKMRKRSFHELVMENKKELMTNTEYLNQLEEKLEQRFKQK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........---10........20........30........40-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
M
R
K
R
S
F
---
H
E
L
V
M
E
N
K
K
E
L
MT
N
T
E
Y
L
N
Q
L
E
E
K
L
E
Q
R
FKQK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
60.81
27%
-
- C8 -
4C46
1
?
A:
[32-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
I
E
A
N
D
R
E
I
N
L
V
P
A
S
I
K
Q
I
E
W
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
60.57
27%
140
- C8 -
1VHR
1
DUS3_HUMAN
A:
[7-184]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
V
Q
D
L
N
D
L
L
S
DGSG
C
Y
S
L
PSQPCNEVTPR
I
Y
V
G
N
A
S
V
A
Q
D
I
P
K
L
Q
K
L
GIT
H
V
L
N
AAEGRSFMHVNTNANFYKDSG
I
T
Y
L
G
I
KANDTQEFNLSAY
F
E
R
A
A
D
F
I
D
Q
A
L
AQKN
G
R
V
L
V
H
C
REGYSR
S
P
T
L
V
I
A
Y
L
M
M
R
Q
K
M
D
V
K
S
A
---
L
S
I
V
R
Q
N
R
-
E
I
G
P
N
D
G
F
L
A
Q
L
C
Q
L
N
D
R
L
A
K
E
G
KLKP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
57.23
21%
222
- C8 -
3JCL
-
?
A:
[15-1118]
YI
G
D
F
R
C
IQLVNSNGANVSAPSISTETVEVSQGLG
T
Y
Y
V
L
D
R
V
Y
L
N
A
T
L
L
L
T
G
Y
YPVDG
S
K
F
R
NLALRGTNSVSLSWFQPPY
L
N
Q
F
N
D
G
I
F
A
K
V
Q
NLKTSTPSGATAY
F
P
T
I
V
I
G
S
LFGYT
S
Y
T
V
V
I
E
P
Y
NGVIMASVCQYTICQ
L
P
Y
T
D
CKPNTNGNKLIGFWHTDVKPPICV
L
K
R
N
F
T
L
NVNAD
A
F
Y
F
H
F
Y
Q
H
GG
T
F
Y
A
Y
Y
A
DKPSATTFL
F
S
V
Y
I
GDILT
Q
Y
Y
V
L
P
FICNPTAGSTFAPRY
W
V
T
P
L
V
K
R
Q
Y
L
F
N
F
N
QKGVITSAVDCASS
Y
T
S
E
I
K
C
K
T
QSMLP
S
T
G
V
Y
E
L
SG
Y
T
V
Q
P
V
G
V
V
Y
R
R
V
A
N
L
P
A
C
N
I
E
E
W
L
T
ARSVPSPLN
W
E
R
K
T
F
Q
N
C
N
F
N
L
S
S
L
L
R
Y
V
QAE
S
L
F
C
N
NID
A
S
K
V
Y
G
RCFG
S
I
S
V
D
K
F
A
V
P
RSRQVDLQLGNSGFLQTANYKIDTAAT
S
C
Q
L
H
Y
T
L
PKNNVTINNHNPSS
W
N
R
R
Y
G
F
N
D
A
GVFGKNQHDVV
Y
A
Q
Q
C
FTVRSSYCPCAQPDIVSPCTTQTKPKSAFVNVGDHCEGLGVLEDNCGNADPHKGCICANN
S
F
I
G
W
S
H
D
T
C
LVNDRC
Q
I
F
A
N
I
L
L
N
GINSGTTCSTDLQLPNTEVVTGIC
V
K
Y
D
L
YG
I
T
G
Q
G
V
F
K
E
V
K
ADYYNSWQT
L
L
Y
D
VNGNLN
G
F
R
DLTTN
K
T
Y
T
I
R
S
C
Y
S
G
R
V
S
AAFHKDAP
E
P
A
L
L
YRNIN
C
S
Y
V
F
S
N
NISREENPLNYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSK
S
R
R
A
H
S
S
V
S
T
G
Y
R
L
T
T
F
EPYTPM
L
V
N
D
S
V
Q
S
V
D
G
L
Y
E
M
Q
I
PTNF
T
I
G
H
H
E
E
F
I
Q
TRSPKVTID
C
A
A
F
V
CGDN
T
A
C
R
Q
Q
L
V
EY
G
S
F
C
V
N
V
N
A
I
L
N
E
V
N
N
L
L
D
N
M
Q
L
Q
V
A
S
A
L
M
Q
GVS
A
I
R
G
R
S
A
I
E
D
L
L
F
D
KVKLS
D
V
G
F
V
E
A
Y
N
N
C
TGGQEVRD
L
L
C
V
Q
S
F
N
G
I
K
V
L
P
P
VLS
E
S
Q
I
S
G
Y
T
T
G
A
T
A
A
A
M
FP
P
W
S
A
A
A
GVP
F
S
L
S
V
Q
Y
R
I
N
G
L
GVTMNVLSE
N
Q
K
M
I
A
S
A
F
N
N
A
L
G
A
I
Q
D
G
F
D
A
T
N
S
A
L
G
K
I
Q
S
V
V
N
A
N
A
E
A
L
N
N
L
L
N
Q
L
S
N
R
F
G
A
I
SAS
L
Q
E
I
L
T
R
LE
A
V
E
A
K
A
Q
I
D
R
L
I
N
G
R
L
T
A
L
N
A
Y
I
S
K
Q
L
S
D
S
T
L
I
K
V
S
A
A
Q
A
I
E
K
V
N
E
CVKSQTTRINFCGNGNH
I
L
S
L
V
Q
N
A
PY
G
L
Y
F
I
H
F
S
Y
V------------------------------------------------------------------------------------------------------------
21
Fugue
53.60
19%
-37
* C8 *
2LE3
-
CPT1A_HUMAN
A:
[1-42]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
E
A
H
Q
A
V
A
F
---
Q
F
T
V
T
P
D
G
I
D
L
R
L
S
H
E
A
L
R
Q
I
Y
L
S
G
L
H
S
W
K
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
51.25
40%
-526
- C6 -
2WPQ
-
?
A:
[1-10]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
Q
I
E
D
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.05
35%
-19
- C8 -
1IUY
-
A:
[35-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
R
K
K
M
Q
H
---
N
V
L
V
A
E
V
T
Q
Q
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
45.97
45%
69
- C- -
4HJB
-
?
C:
[1-14]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
M
K
Q
I
E
D
K
L
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
44.01
45%
-92
- C4 -
2R2V
-
?
A:
[2-12]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
K
Q
V
A
D
K
L
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
43.90
50%
-
- C3 -
2WQ1
-
A:
[2-11]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
Q
L
E
D
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
43.07
12%
49
- C8 -
1HZ4
10
A:
[3-368]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EIKD
I
R
E
D
T
M
H
A
E
F
N
A
L
R
A
Q
V
A
I
N
D
GN
P
D
E
A
E
R
L
A
K
L
A
L
E
E
LPPGW
F
Y
S
R
I
V
A
T
S
V
L
G
E
V
L
H
C
K
GE
L
T
R
S
L
A
L
M
Q
Q
T
E
Q
M
A
R
Q
H
DV
W
H
Y
A
L
W
S
L
I
Q
Q
S
E
I
L
F
A
Q
GF
L
Q
T
A
W
E
T
Q
E
K
A
F
Q
L
I
N
E
Q
H
L
E
Q
L
P
M
---
H
E
F
L
V
R
I
R
A
Q
L
L
W
A
W
A
R
L
D
E
A
E
A
S
A
R
S
G
I
E
V
L
S
SYQPQQQ
L
Q
C
L
A
M
L
I
Q
C
S
L
A
R
GD
L
D
N
A
R
S
Q
L
N
R
L
E
N
L
L
G
N
GKYH
S
D
W
I
S
N
A
N
K
V
R
V
I
Y
W
Q
M
T
GD
K
A
A
A
A
N
W
L
R
H
TAKPEFANNHFL
Q
G
Q
W
R
N
I
A
R
A
Q
I
L
L
GE
F
E
P
A
E
I
V
L
E
E
L
N
E
N
A
R
S
L
RL
M
S
D
L
N
R
N
L
L
L
L
N
Q
L
Y
W
Q
A
GR
K
S
D
A
Q
R
V
L
L
D
A
L
K
L
A
N
R
T
GFI
S
H
F
V
I
E
G
E
A
M
A
Q
Q
L
R
Q
L
I
Q
L
NTLP
E
L
E
Q
H
R
A
Q
R
I
L
R
E
I
N
29
Fugue
42.10
17%
61
- C8 -
4EW7
6
?
A:
[13-125]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
S
V
N
K
Y
I
L
S
I
Q
D
I
Y
K
N
S
P
---
V
P
V
C
V
R
N
Q
S
R
---
K
I
I
Y
A
N
---
G
A
F
I
E
L
F
S
K
E
DQPLSGDSYNR
Y
G
V
E
V
F
L
S
S
L
E
L
E
C
Q
S
L
GHG
A
A
F
C
R
R
F
N
F
HG
E
I
Y
Q
I
R
M
E
N
I
S
F
DNN
E
I
I
V
L
W
Q
I
N
L
FP--------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.30
40%
-
- C5 -
3WPR
-
?
A:
[3333-3342]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
Q
I
E
D
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
39.92
33%
-134
- C8 -
2K5C
-
?
A:
[28-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
I
E
N
F
E
E
I
V
K
D
R
E
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
39.86
40%
-
- C2 -
2YO0
-
A:
[286-295]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
Q
I
E
D
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.48
40%
-
- C1 -
3WP8
-
?
A:
[3169-3178]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
Q
I
E
D
K
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
39.37
12%
35
- C9 -
1H5O
-
MYC2_CRODU
A:
[1-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
Q
C
H
K
K
G
G
---
H
C
F
P
K
E
K
I
C
--
L
P
P
S
S
D
F
G
K
M
D
C
R
W
R
W
K
C
C
K
K
G
SG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
38.49
10%
75
- C8 -
2UVH
2
?
A:
[5-408]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
V
N
L
R
M
S
W
W
G
G
N
G
R
H
Q
V
T
L
K
A
L
E
E
F
H
K
Q
H
PN
I
N
V
K
A
E
Y
T
G
WDG
H
L
S
R
L
T
T
Q
I
A
G
GTEPDVMQTNWNWLPIFSKDGTGFYNLFSVKEQLDLAQFD
P
K
E
L
Q
Q
T
TVNGKLNGIPI
S
V
T
A
R
I
F
Y
F
N
D
A
T
W
A
K
A
GLEYPKT
W
D
E
L
L
A
A
G
K
V
F
K
E
K
LGDQYYP
V
V
L
E
H
Q
D
T
L
A
L
I
R
S
Y
M
T
Q
K
YNIPTIDEANKKFAYS
P
E
Q
W
V
E
F
F
T
M
Y
K
T
M
V
D
N
HVMPS
T
K
Y
Y
A
SFGKSNMYEM
K
P
W
I
N
GEWAGTYMWNSTITKYSDNLTKP
A
K
L
V
L
G
P
Y
P
M
L
PGAKDAGLFFKPA
Q
M
L
S
I
G
KSTKH
P
Q
E
S
A
M
L
I
N
F
L
L
NS
K
E
G
V
E
A
L
GLERGVPLS
A
T
A
V
T
Q
L
R
A
S
GVIKDED
P
S
V
A
G
L
N
M
A
L
E
LPHK
M
T
T
S
PYFDD
P
Q
I
V
S
L
F
G
D
A
I
---
Q
Y
I
D
Y
G
Q
K
----
T
V
Q
E
T
A
E
Y
F
N
K
Q
G
D
R
I
L
K
R
A
M
R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
36.42
25%
-38
- C8 -
3TDU
-
CUL1_HUMAN
C:
[20-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
M
R
K
V
L
K
H
---
Q
Q
L
L
G
E
V
L
T
Q
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
36.37
27%
-
- C7 -
2HY6
-
GCN4_YEAST
A:
[3-12]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
Q
L
A
D
A
V
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
36.29
25%
47
- C8 -
4ABX
-
RECN_DEIRA
A:
[307-322]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
D
P
E
A
L
D
R
V
E
A
R
L
S
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------