@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18730: (2016-06-30 )
MNRMSTIFLKIALVLIGIPILALCIFLVPKVANYSAELFPNIAYIKYLVFIYLYVTAIPFYFALYQAFKLLSYIDKNKAFSGLSVRALKNIKYCAVTISIFYAAGMPVFYLMAEIDDAPGIIVIGLVIIFASMVIAVFAAVLQKLLKEAIDIKSENDLTV
Atome Classification :
(20 SA)
-------------------------------------------------------.........10......-----..20......-..30-...-----...--..40........50-.-..--------....--.60.....---...70---------........-80...-.....90......-..100..---------.....110....------------...120.......130...-....140.......150--........160---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------MN
R
M
S
T
I
F
L
K
I
A
L
V
L
I
G
-----
I
P
I
L
A
L
C
I
F
L
-
V
P
K
V-ANY-----
S
A
E
--LFP
N
I
A
Y
I
K
Y
L
V
F
I
-
Y
-
L
Y
--------
V
T
A
I
--
P
F
Y
F
A
L
Y
Q
---
A
F
K
L
L
---------
S
Y
I
D
KNKA-FSGL
S
-
V
R
A
LKNI
K
Y
C
A
V
T
-
I
S
I
F
Y
AA---------GM
P
V
F
Y
L
M
AEID------------DAPG
I
I
V
I
G
L
V
I
I
F
A
S
M
V
I
-
A
V
F
A
A
V
L
Q
K
L
L
K
E
A
ID---IKSENDLTV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
79.30
23%
-95
- C2 -
4Q7O
8
?
A:
[4-136]
---------------------------------------------------------
M
K
N
N
I
F
L
N
L
N
K
K
S
I
N
N
NH
F
V
I
S
I
F
F
E
T
I
Y
Q
-
F
E
T
--
K
D
T
-----
L
L
E
--
C
F
K
N
I
T
T
T
G
H
F
G
V
I
-
G
-
A
Q
--------
Y
E
K
I
DA
T
R
W
I
G
D
Y
E
---
E
V
N
G
F
---------
E
Y
I
D
K
A
P
-----------------------
S
I
Y
F
S
V
---------
G
-------
D
D
F
N
------------
P
E
E
L
I
I
P
I
N
L
A
Y
H
Y
F
N
I
A
I
-
S
D
F
L
I
A
H
P
E
Y
Q
K
K
C
K
E
---
I
Q
K
----
T
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
71.98
16%
-233
- C2 -
3KXY
-
EXSC_PSEAE
A:
[1-133]
-------------------------------------------------------
M
D
L
T
S
K
V
N
R
L
L
A
E
F
A
G
R
-----
I
G
L
P
S
L
-----
S
L
D
E
-
E
G
M
-----
A
S
L
--
L
F
D
E
------
Q
V
G
V
-
T
-
L
L
--------
L
L
A
E
--
R
E
R
L
L
L
E
A
---
D
V
V
G
I
---------
D
V
L
G
E
G
I
F
-
R
Q
L
A
S
-
F
N
R
H
W
H
R
F
D
L
H
F
G
-
F
--------------------------
D
------------
E
L
T
G
K
V
Q
L
Y
A
Q
I
L
A
A
Q
L
T
L
-
E
C
F
E
A
T
L
A
N
L
L
D
H
A
E
F
---
W
Q
R
L
L
P
C
A
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
69.23
10%
-202
* C2 *
1V95
-
A:
[1-130]
-------------------------------------------------------
G
S
S
G
S
S
G
P
V
D
C
S
V
I
V
V
N
-----------------
K
Q
T
-
K
D
Y
-----
A
E
S
--
V
G
R
K
V
R
D
L
G
M
V
V
D
L
-
I
-
F
L
--------
N
T
E
V
--
S
----------
L
S
Q
A
L
---------
E
D
V
S
R
G
G
S
-
P
F
A
I
V
-
I
T
Q
Q
H
Q
I
H
R
-
S
C
T
-
V
N
I
M
F
-----------
G
T
P
-----
Q
E
H
R
------------
N
M
P
----
Q
A
D
A
M
V
L
V
A
R
N
Y
-
E
R
Y
K
N
E
C
R
E
K
E
R
E
E
I
A
---
R
Q
A
S
G
P
S
S
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
66.26
14%
-90
- C2 -
2DTJ
2
AK_CORGL
A:
[4-167]
---------------------------------------------------------------
A
V
L
T
G
V
A
T
D
-----
K
S
E
A
K
V
T
V
L
G
-
I
S
D
K
-
P
G
E
-----
A
A
K
--
V
F
R
A
L
A
D
A
E
I
N
I
D
M
-
V
-
L
Q
N
V
SSVEDG
T
T
D
I
--
T
F
T
C
P
R
S
D
---
G
R
R
A
M
---------
E
I
L
K
K
L
Q
V
-
Q
G
N
W
T
N
V
L
Y
D
D
Q
V
G
K
V
S
L
V
G
A
G
M
K
S
H
P
---------
G
V
T
A
E
F
M
E
A
L
R
D
------------
V
N
V
N
I
E
L
I
S
T
S
E
I
R
I
S
V
L
I
R
E
D
D
L
D
A
A
A
R
A
L
H
E
Q
F
Q
---
L
G
G
E
D
E
A
V
V
Y----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
65.22
17%
-51
- C2 -
2A9F
1
?
A:
[3-388]
LKNQLGQLA
L
E
Q
A
K
T
F
GGK
L
E
V
Q
P
KVDIKT
K
H
D
L
S
I
A
YTPGV
A
S
V
S
S
A
I
A
K
DKTL
A
Y
D
L
T
T
K
K
N
T
V
A
V
I
S
D
G
-----
T
A
V
L
G
L
----------
G
D
I
-----
G
P
E
--
A
A
M
P
V
M
E
G
K
A
A
L
F
K
-
A
-
F
A
G-------
V
D
A
I
--
P
I
V
L
D
T
K
D
---
T
E
E
I
I
---------
S
I
V
K
A
L
A
P
T
F
G
G
I
N
-
L
E
D
I
S
A
P
R
C
F
E
I
E
-
Q
R
L
I
K
E
C
---------
H
I
P
V
F
H
-----
D
------------
D
Q
H
G
T
A
I
V
V
L
A
A
I
F
N
S
L
K
L
-
L
K
K
S
L
D
E
V
S
I
V
V
N
G
G
G
---
S
A
G
L
S
I
T
R
K
L
L
A
A
GAT
K
V
T
V
V
D
KFGIINEQEAAQLAPD
I
A
K
V
T
N
REFKSGTLEDALEGADI
F
I
G
V
S
A
PGVLK
A
E
W
I
S
K
MAAR
P
V
I
F
AMANPIPEIY
P
D
E
A
L
E
A
GAY
I
V
G
T
GRSDFPNQINNVLA
F
P
G
I
F
R
G
A
L
D
A
RAKTIT
V
E
M
Q
I
A
A
A
K
G
I
A
S
L
VPDDALSTTNIIPDA
F
K
E
G
V
A
E
I
V
A
KSVRSVVL
23
Fugue
63.49
15%
-199
* C3 *
3BEH
7
CNGK1_RHILO
A:
[7-228]
----------------------------LRIYAPL
N
A
V
L
A
A
P
G
L
L
A
V
A
A
L
T
IPDM
S
G
R
S
R
L
A
L
A
A
L
L
A
V
I
W
G
-----
A
Y
L
L
Q
L
A
A
T
L
-
L
K
R
R
-
A
G
V
VRDR
T
P
K
I
--
A
I
D
V
L
A
V
L
V
P
L
A
A
F
-
L
-
L
D
--------
G
S
P
D
--
W
S
L
Y
C
A
V
W
---
L
L
K
P
L
RDSTF
F
P
V
L
G
R
V
L
A
N
E
A
-
R
N
L
I
G
-
V
T
T
L
F
G
V
V
L
F
A
V
A
-
L
A
A
Y
V
I
E
RDIQPEKFG
S
I
P
Q
A
M
W
W
A
V
V
T
L
S
TTGYGD
T
I
P
Q
S
F
A
G
R
V
L
A
G
A
V
M
M
S
G
I
G
I
F
-
G
L
W
A
G
I
L
A
T
G
F
Y
Q
E
V
R
---
R
G
D
F
V
R
N
W
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
57.83
24%
22
- C3 -
2W0C
-
P6_BPPM2
T:
[1-127]
-----------------------------------------------------------
M
A
N
F
L
T
K
N
F
V
W
I
L
-----
A
A
G
V
G
V
W
F
Y
Q
-
K
A
D
N
-
A
A
K
-----
T
A
T
KP
I
A
D
F
L
A
E
L
Q
F
L
V
N
G
-
S
-
N
Y
--------
V
K
F
P
--
N
A
G
F
V
L
T
R
DAL
Q
D
D
F
I
---------
A
Y
D
D
R
I
K
A
-
W
L
G
T
H
-
D
R
H
K
D
F
-------------------------------
L
A
E
I
L
------------
D
H
E
R
-----------------
R
V
K
P
V
Y
R
K
L
I
G
N
I
I
D
AST
I
R
A
A
S
G
V
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
57.49
32%
-117
- C4 -
3PDS
3
ADRB2_HUMAN (first)
A:
[63-126]
-----------------------------------------------------------------------------
V
P
F
G
A
A
C
I
L
M
K
M
W
T
F
-
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
E
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.49
32%
-69
- C4 -
4QKX
2
A:
[236-302]
-----------------------------------------------------------------------------
V
P
F
G
A
A
C
I
L
T
-
K
T
W
T
F
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
E
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
54.43
34%
-211
- C4 -
3NYA
1
ADRB2_HUMAN (first)
A:
[110-158]
---------------------------------------------------------------------------------------------
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
W
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.57
34%
-182
- C4 -
3D4S
3
ENLYS_BPT4
A:
[110-158]
---------------------------------------------------------------------------------------------
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
W
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.37
34%
-174
- C4 -
3NY8
2
ENLYS_BPT4
A:
[110-158]
---------------------------------------------------------------------------------------------
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
W
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.88
34%
-160
- C4 -
3NY9
2
ADRB2_HUMAN (first)
A:
[110-158]
---------------------------------------------------------------------------------------------
G
N
F
-----
W
C
E
--
F
W
T
S
I
D
V
L
C
V
T
A
S
I
-
W
T
L
C
--------
V
I
A
V
--
D
R
Y
F
A
I
T
S
---
P
F
K
Y
Q
---------
S
L
L
T
K
N
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
49.24
33%
-297
- C4 -
2EKM
1
?
A:
[90-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
F
P
-
I
N
V
L
N
R
I
K
N
V
E
E
V
-
V
R
I
F
A
A
T
---------
A
N
P
L
Q
V
L
V
A
E
T
D
------------
Q
G
R
G
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
47.75
19%
-104
- C- -
1MSI
-
ANP12_ZOAAM
A:
[8-28]
----------------------------------------------------------------------------------------------------------------------------------------------------------
N
---------
Q
L
I
P
I
N
T
A
-
L
T
L
V
M
-
M
R
S
E
V
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
45.93
15%
-143
- C5 -
4UR6
1
?
A:
[8-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
I
P
I
N
T
A
-
L
T
P
A
M
-
M
A
G
K
V
T
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.77
10%
-180
- C2 -
2M4M
-
?
A:
[1-124]
-------------------------------------------------------
M
S
L
G
S
E
S
E
T
G
N
A
V
V
V
F
G
-----
Y
R
----------
E
A
I
-
T
K
Q
-----
I
L
A
--
Y
F
A
Q
F
G
E
I
----------------------------------------
L
---------
E
D
L
E
S
E
L
G
-
D
T
E
T
M
-
R
T
P
G
Y
F
F
Q
Q
A
P
N
R
-
R
R
I
S
R
E
H
---------
G
R
T
W
T
K
L
T
Y
A
N
H
------------
S
S
Y
L
R
A
L
R
E
H
G
T
I
Y
C
G
A
A
I
-
G
C
V
P
Y
K
H
E
L
I
S
E
L
S
R
E
---
G
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.81
20%
-107
* C5 *
1UCS
-
ANP1_LYCDA
A:
[9-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
I
P
I
N
T
A
-
L
T
L
I
M
-
M
K
A
E
V
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.71
29%
-78
- C6 -
2RAL
-
SDRG_STAEP
A:
[336-397]
-----------------------------------------------------------------------------
V
P
S
D
L
T
D
S
F
A
-
I
P
K
I
-
K
D
N
-----
S
G
E
--
I
I
A
T
G
T
Y
D
N
T
N
K
Q
I
T
Y
-
T
F
--------
T
D
Y
V
--
D
K
Y
C
N
I
K
A
---
H
L
K
L
T
---------
S
Y
I
D
K
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
41.43
29%
-65
* C6 *
1R17
1
SDRG_STAEP
A:
[81-142]
-----------------------------------------------------------------------------
V
P
S
D
L
T
D
S
F
A
-
I
P
K
I
-
K
D
N
-----
S
G
E
--
I
I
A
T
G
T
Y
D
N
T
N
K
Q
I
T
Y
-
T
F
--------
T
D
Y
V
--
D
K
Y
E
N
I
K
A
---
H
L
K
L
T
---------
S
Y
I
D
K
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------