@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18820: (2016-06-30 )
MKIRKILLSSALSFGMLISAVPALAAGTSSEVAVKNEEYDYDTIYRISPLPMDFQPTIEYNGYTYTLTRHYFDYSIGFYTAIYTKVV
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--........20........30....----..-----..--------40........50------......-...60-.---------........70.........80....----...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
I
R
K
I
L
L
S
S
A
--
L
S
F
G
M
L
I
S
A
V
P
A
LAAGTSS
E
V
A
VK----NE-----EY--------DYD
T
I
Y
R
ISPL-------PMDFQP-
T
I
E
Y--N---------
G
Y
T
Y
T
L
T
R
H
-
Y
F
DY
S
I
G
F
Y
T
-
A
I
Y
T
----KVV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.56
24%
54
- C8 -
5FQE
4
?
A:
[137-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
E
K
N
K
I
A
S
A
W
-
I
N
I
K
I
P
R
N
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
----
L
E
K
S
Y
T
F
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
52.35
24%
58
- C8 -
5FR0
1
?
A:
[137-216]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
E
K
N
K
I
A
S
A
W
-
I
N
I
K
I
P
R
N
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
----
L
E
K
S
Y
T
F
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.83
24%
32
- C8 -
5FQH
1
?
A:
[137-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
E
K
N
K
I
A
S
A
W
-
I
N
I
K
I
P
R
N
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
----
L
E
K
S
Y
T
F
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.48
24%
38
- C8 -
5FQF
1
?
A:
[137-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
E
K
N
K
I
A
S
A
W
-
I
N
I
K
I
P
R
N
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
----
L
E
K
S
Y
T
F
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.30
24%
59
- C8 -
5FQG
2
?
A:
[137-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
I
E
K
N
K
I
A
S
A
W
-
I
N
I
K
I
P
R
N
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
----
L
E
K
S
Y
T
F
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
51.22
19%
-53
- C6 -
3NBM
1
?
A:
[5-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
L
K
V
L
V
L
C
A
GS
G
T
S
A
Q
L
A
N
A
I
N
E
G
A
N
L
T
E
V
R
V
I
A
N
----
S
G
-----
A
Y
GAHYDIMG
V
Y
D
L
I
I
L
A
P
Q
V
-------
R
S
Y
Y
R
E
M
K
V
D
A
ER
L
---------
G
I
Q
I
V
A
T
R
G
M
E
Y
I
H
L
T
K
S
P
S
-
K
A
L
Q
----
F
V
L
E
H
Y
Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
46.88
18%
44
* C8 *
5FQE
24
?
A:
[28-607]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
L
G
A
S
I
G
S
TDFHYLQKD
Y
D
E
I
K
K
LNLN
T
W
N
E
V
A
W
IG
D
E
L
N
S
K
I
V
M
W
T
N
S
S
P
V
N
N
V
T
L
S
S
S
DFINENGDLISSNN
I
K
I
S
W
L
K
E
T
L
A
NIGRSNPS
A
P
L
E
P
F
PDIIHNS
G
S
L
N
I
E
K
N
K
I
A
S
A
W
I
N
I
K
---
I
P
R
N
--
A
K
P
G
I
Y
N
G
S
I
E
V
T
A
D
E
L
E
K
S
Y
T
F
------------
D
Y
--------
S
F
E
V
L
N
L
V
Q
P
L
-------
P
S
E
T
N
T
-
Q
I
E
F
--
W
---------
Q
H
P
Y
T
I
A
R
Y
-
Y
K
I
C
K
E
D
L
F
T
-
E
K
H
F
----
K
Y
L
R
G
N
L
K
E
Y
R
N
M
G
G
R
G
V
I
A
T
IVHEAWNHQSY
D
S
D
P
S
M
I
K
W
R
K
N
SYG
T
F
E
F
D
Y
S
H
F
D
K
W
I
Q
L
N
I
D
L
GILDPEKGFGQIKCYSIVPWNN
R
I
Q
Y
F
N
EATN
K
E
E
A
I
N
P
T
PGS
D
L
W
I
N
I
W
T
Q
F
L
T
S
F
M
S
H
L
E
E
K
GWFNI
T
Y
I
S
M
D
ERS
M
D
D
L
K
A
C
V
D
L
I
E
N
ITNNSYE
H
F
K
I
S
S
A
M
DYESGNDY
S
F
L
D
R
ID
D
I
S
I
G
LSHINHNSD
D
M
K
N
M
A
T
H
R
Q
E
L
G
L
L
T
T
I
Y
T
C
TGDYPSSFTISDPS
E
G
A
F
T
I
W
Y
S
L
Y
Q
NTN
G
F
L
R
WSWDGWVENPLENVSYKYWEPGDPFL
I
Y
P
A
EKDSIGKT
F
Y
S
T
P
R
L
E
K
L
K
E
G
I
R
D
I
N
K
A
K
Y
L
M
E
K
A
P
NL
K
N
S
I
E
N
L
I
Y
S
L
K
R
P
N
K
G
E
N
AYGSAVAAS
K
E
D
R
D
L
T
I
S
E
A
N
R
I
K
N
G
I
N
N
F
A
R
E
F
I
S
L
T
M
7
PsiBlast_PDB
43.22
26%
-107
- C6 -
4N4Q
-
?
A:
[79-128]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
A
Q
I
G
S
L
N
I
E
E
T
K
E
L
A
K
L
----
A
K
-----
E
L
--------
K
Y
D
A
I
S
A
I
T
P
Y
-----------------
Y
--
Y
---------
N
F
S
F
N
E
T
H
H
-
Y
Y
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
42.61
17%
18
- C6 -
2FOK
-
T2F1_PLAOK
A:
[287-386]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
P
K
R
V
Y
WEMLATNL
T
D
K
E
Y
V
R
T
R
R
A
--
L
I
L
E
I
L
I
K
A
G
S
L
K
I
E
Q
I
Q
D
N
L
K
K
L
----
G
F
-----
D
E
--------
V
I
E
T
I
E
N
D
I
K
G
-------
L
I
N
T
G
I
-
F
I
E
I
--
K
---------
G
R
F
Y
Q
L
K
D
H
-
I
L
Q
F
V
I
P
N
R
L
-
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
42.49
26%
-98
- C6 -
4N4P
-
?
A:
[79-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
A
Q
I
G
S
L
N
I
E
E
T
K
E
L
A
K
L
----
A
K
-----
E
L
--------
K
Y
D
A
I
S
A
I
T
P
Y
-----------------
Y
--
Y
---------
N
F
S
F
N
E
T
H
H
-
Y
Y
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
41.24
23%
-72
- C5 -
4ZRX
7
?
A:
[5-584]
E
N
Y
Y
V
K
H
V
E
F
PQSAT
I
E
Q
K
V
D
M
A
A
R
L
V
P
T
P
Q
Q
Y
A
W
Q
Q
M
E
L
T
A
F
L
HFG
I
N
T
F
T
GREWGDGKEDPALFNPSELD
A
E
Q
W
V
R
T
L
K
E
A
GFK
M
V
L
L
TAKHHDGFCLWPTATTKHSVASSPWKNGQGD
V
V
K
E
L
R
A
A
C
D
K
Y
D
M
K
F
G
V
Y
L
S
PWDRNAECYGD
S
P
R
Y
N
D
F
F
I
R
Q
L
T
E
L
L
T
NYGEVH
E
V
W
F
D
GANGEGPNGKKQVYD
W
D
A
F
Y
Q
T
I
Q
R
L
QPK
A
V
M
A
IMGDDVRWVGNEKGVGRETEWNATVLTPGIYAR
S
Q
E
N
N
K
R
L
GVFSKAEDLGSRKILEKATELFW
Y
P
S
E
V
D
V
S
IRPGWFYHAEEDGKVKS
L
K
H
L
S
D
I
Y
F
Q
S
V
GYN
S
V
L
L
L
N
I
P
P
D
RRGLIH
E
A
D
I
K
R
L
K
E
F
A
D
Y
R
Q
Q
T
F
ADNRVKNGRK
Y
W
S
T
T
S
G
G
E
A
V
Y
A
L
K
S
KSEIN
L
V
M
L
Q
E
DITKGQRVE
A
F
T
V
E
A
L
T
DNGWKEV
G
K
G
T
T
IGY
K
R
M
L
R
F
P
A
V
N
A
N
K
L
R
V
R
I
D
E
C
R
L
T
--------
A
Y
V
S
Q
V
A
A
Y
Y
A
E
P
L
Q
E
E
T
T
K
EDWN
N
L
-----
P
R
--------
S
G
W
K
Q
V
A
A
S
P
L
-------
T
I
D
L
G
K
-
T
V
T
L
--
S
---------
S
F
T
Y
A
P
S
K
A
-
E
V
K
P
-----
T
M
A
F
R
Y
----
Q
F
F
V
S
MDGK
S
W
K
E
V
PASGEFSNIMHNP
L
P
Q
T
V
A
F
S
Q
K
V
Q
A
R
F
I
K
L
E
A
T
T
PDA
T
V
A
K
V
N
MNE
I
G
V
M
V
I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
39.03
60%
-504
- C3 -
2INY
-
CAPSH_ADEG1
A:
[749-763]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--
N
---------
G
Y
R
F
W
P
D
R
H
-
Y
F
H
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
38.07
23%
-104
- C7 -
2B9K
-
BLCI_BACIU
A:
[2-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
L
V
Q
S
P
N
-------
G
-
N
F
A
A
-
S
F
V
L
--
D
---------
G
T
K
W
I
F
K
S
K
-
Y
Y
D
S
S
K
G
Y
W
V
-
G
I
Y
E
----
V
W
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
36.59
23%
-73
- C7 -
2B9K
-
BLCI_BACIU
A:
[1-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
L
V
Q
S
P
-------
N
G
N
F
A
A
-
S
F
V
L
--
D
---------
G
T
K
W
I
F
K
S
K
-
Y
Y
D
S
S
K
G
Y
W
V
-
G
I
Y
E
VWDR
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
36.34
23%
-114
* C7 *
4A4Y
1
MXIG_SHIFL
A:
[93-130]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
N
I
C
Q
F
S
D
E
KGEQI
D
I
N
-
S
Q
F
N
-
S
F
E
Y
--
D
---------
G
I
S
F
H
L
K
N
M
-
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
33.89
50%
-
- C1 -
1HHH
-
C:
[1-10]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
-------
P
S
D
F
F
P
-
S
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
31.27
20%
-62
- C4 -
4EO1
-
G3P_BPIKE
A:
[129-157]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
N
N
-
V
F
K
G
--
D
EG
G
F
Y
I
N
Y
N
G
C
E
Y
E
A
T
G
V
-
T
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
31.14
15%
-20
- C6 -
1XOU
-
?
B:
[2-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
S
Q
T
R
N
K
E
--
L
L
D
K
K
I
R
S
E
I
E
A
I
K
K
I
I
A
E
F
D
V
V
K
----
E
S
-----
V
N
--------
E
L
S
E
K
A
K
T
D
P
--------
Q
A
A
E
K
L
-
N
K
L
I
--
E
---------
G
Y
T
Y
G
E
E
R
K
-
L
Y
D
S
A
L
S
K
I
E
-
K
L
I
E
----
T
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
29.02
8%
-129
* C6 *
2KYZ
-
?
A:
[1-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
Y
V
L
Y
V
P
D
--
I
S
C
N
H
C
K
M
R
I
S
K
A
L
E
E
L
G
V
K
N
Y
E
V
----
S
V
-----
E
E
--------
K
K
V
V
V
E
T
E
N
---------
L
D
S
V
L
K
-
K
L
E
E
--
I
---------
D
Y
P
V
E
S
Y
Q
E
-
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
18.06
19%
-
- C2 -
2K3A
-
?
A:
[1-16]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
V
T
A
T
T
--
L
T
A
G
I
G
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------