@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18899: (2016-06-30 )
MNFLLDLFTNWTFDKVLDYTLAAVIWSVFKSRSKQNKYPGYFEKIRRYRNLHPLLRSLSMRVLLSITIHPYMFS
Atome Classification :
(19 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-----....10........20-----------.....-------....30....---...---.40.....---------..----.50--......-..----.60........70...----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
F
L
L
-----
D
L
FTNW
T
F
D
K
V
L
D
Y
T
------------
L
A
A
V
I
-------
W
S
V
F
K
SRSKQ---NKY---
P
G
Y
F
E
K
I
R
---------
R
Y
----
R
N
---
L
H
P
L
L
R
-
S
L
----
S
M
R
V
L
L
S
I
T
IH
P
Y
MFS----------------------------------------------------------------------------
13
Fugue
94.92
19%
0
- C- -
2STW
-
A:
[1--51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VIP
A
A
A
L
A
GYTGSGPIQ
L
W
Q
F
L
L
-----
E
L
L
T
D
K
S
C
Q
S
F
I
S
W
T
GD
G
W
E
F
K
L
SDP
D
E
V
A
R
R
-------
W
G
K
R
K
N
K
P
-
K
---
M
N
Y
---
E
K
L
S
R
G
L
R
---------
Y
Y
----
Y
D
---
K
N
I
I
H
K
-
T
A
----
G
K
R
Y
V
Y
R
F
V
-----------------------------------------------------------------------------------
14
Fugue
64.15
17%
-46
- C7 -
4MYY
2
?
A:
[2-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAL
E
A
K
L
L
-----
D
E
I
K
Q
S
S
-
N
Q
E
L
E
S
S
------------
I
D
Q
I
L
-------
E
S
I
I
N
G
G
S
M
L
---
N
K
F
T
K
K
E
Q
I
L
S
E
K
Q
---------
Q
I
----
K
Q
---
L
S
P
L
Q
R
-
A
A
----
L
A
L
K
K
L
E
T
K
L
N
N
T
L
H
E
----------------------------------------------------------------------------
17
Fugue
59.61
35%
-280
- C7 -
1BTQ
2
A:
[1-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
------------
L
A
A
V
I
-------
F
I
Y
F
A
A
L
S
P
A
---
I
T
F
---
G
------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
56.20
19%
29
- C7 -
2W8X
1
?
A:
[1-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
C
N
K
RE
G
P
C
S
Q
R
S
L
C
E
C
D
P
N
L
Q
L
G
------------
R
H
S
D
Q
-------
L
W
H
Y
N
L
R
T
N
R
---
C
E
R
---
G
G
Y
----
R
---------
D
N
----
C
N
---
S
H
S
----
S
S
----
G
A
C
V
M
A
C
E
R
I
H
H
H
H
H
H
----------------------------------------------------------------------------
1
PsiBlast_PDB
50.46
27%
-138
- C7 -
3G3Z
-
?
A:
[11-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
L
I
C
-----
N
V
F
D
K
W
I
G
Q
Q
D
L
N
Y
N
------------
L
F
A
V
L
-------
Y
T
L
A
T
E
G
S
R
T
---
Q
K
H
---
I
G
-----------------------------------------------------------------------------------------------------------------------------------
16
Fugue
50.26
21%
42
- C7 -
4EI7
1
REPX_BACC1
A:
[3-384]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNF
S
E
I
E
S
Q
G
NISLK
F
G
F
L
G
L
G
M
G
G
C
A
I
A
A
E
C
A
N
KETQIKNNKYP
Y
R
A
I
L
V
N
T
N
S
Q
D
F
N
K
IEIKNTGN
V
R
K
I
Q
LEGYEQGAARN
P
Q
V
G
E
E
A
F
V
K
H
E
T
K
I
F
E
A
V
K
Q
E
F
E
DRD
F
I
W
ITCGLGGG
T
G
T
G
A
L
L
K
A
I
E
M
L
Y
E
H
DYNFGLL
L
T
L
P
R
DAEAL
K
V
L
E
N
A
T
S
R
I
R
S
I
A
M
N
QEAFGSIVLID
N
A
K
L
Y
R
K
F
E
E
E
N
P
SALANE
Y
T
S
Y
S
N
K
Y
I
A
D
A
L
H
E
I
N
L
V
T
-----
S
S
F
T
P
F
S
D
T
H
F
D
A
S
E
------------
F
A
Q
V
I
N
TP
G
V
L
S
L
A
K
L
E
L
K
S
N
Q
LDT
E
N
P
---
L
G
Y
L
T
Q
L
G
---------
N
A
----
L
E
K
GV
L
Y
D
T
E
R
-
E
E
L
E
S
-
A
K
K
S
A
L
S
I
V
T
S
P
L
R
A
G
RLYN
F
S
F
L
N
Q
M
E
N
F
L
K
E
R
TPYVDERPI
A
P
Y
V
NKHTTKKEED
I
V
K
F
Y
S
V
V
A
GLPLP
K
R
V
S
D
I
I
D
E
I
T
R
I
K
E
E
R
E
Q
A
N
7
HHSearch
49.17
40%
-137
- C7 -
2LQ0
-
?
A:
[3-17]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
---
F
H
P
L
A
A
-
S
F
----
I
V
R
C
A
---------------------------------------------------------------------------------------
10
HHSearch
44.85
25%
60
- C7 -
2WL8
-
PEX19_HUMAN
A:
[195-227]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
---
E
K
Y
---
P
E
W
L
Q
S
H
R
ESLP
P
E
Q
F
E
K
Y
----
Q
E
---
Q
H
S
V
M
C
-
K
-------------------------------------------------------------------------------------------------
12
Fugue
44.83
14%
-5
- C5 -
2K35
-
HYDMA_HYDVU
A:
[1-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
V
-----
D
C
W
E
T
W
S
R
C
T
K
W
S
Q
G
------------
G
T
G
T
L
-------
W
K
S
C
N
D
R
C
K
E
L
--
G
R
K
---
R
G
Q
C
E
E
K
P
---------
S
R
----
C
P
---
L
S
K
--------------------
K
A
W
T
C
I
C
Y--------------------------------------------------------------------------
19
Fugue
41.82
18%
54
* C7 *
1XKM
3
?
A:
[1-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
R
---
E
V
P
---
P
G
F
T
A
L
I
K
---------
T
L
----
R
K
---
C
K
I
I
-----------------------------------------------------------------------------------------------------
9
HHSearch
41.13
27%
-16
- C7 -
3OQ2
4
CAS2_DESVH
A:
[24-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
---------
R
L
----
R
R
---
I
A
K
A
C
Q
-
D
Y
----
G
Q
R
V
Q
Y
S
V
------------------------------------------------------------------------------------
2
HHSearch
39.38
21%
54
- C7 -
2KNC
-
ITB3_HUMAN
B:
[712-749]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
-------
W
K
L
L
I
T
I
H
D
R
---
K
E
F
----
A
K
F
E
E
E
R
---------
A
R
A
K
W
D
T
A
---
N
N
P
L
Y
K
-
E
-------------------------------------------------------------------------------------------------
8
HHSearch
38.76
21%
-29
- C4 -
4RNL
1
?
A:
[143-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
E
G
F
---
P
G
A
L
D
V
R
V
---------
T
Y
----
T
L
---
S
A
G
A
L
R
I
V
S
C
A
T
T
D
A
P
T
V
V
N
L
T
N
H
T
Y
L
------------------------------------------------------------------------------
6
HHSearch
37.45
8%
-83
- C3 -
2MOF
-
LAMP2_HUMAN
A:
[396-407]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
F
I
G
L
K
H
H
H
---
A
G
Y
----------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
33.02
32%
109
- C7 -
2KHF
-
?
A:
[1-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
-------
W
K
N
F
W
S
S
L
R
K
---
G
F
Y
---
D
G
--
E
A
G
R
---------
A
I
----
R
R
------------------------------------------------------------------------------------------------------------
3
HHSearch
32.62
20%
-
- C1 -
2K35
-
A:
[1-10]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
V
-----
D
C
W
E
T
W
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
26.62
12%
21
- C7 -
4KNH
10
NU192_CHATD
A:
[1-961]
GPHMTDLR
K
L
E
A
L
Q
A
L
H
A
E
L
V
A
V
R
Q
HRFEG
L
Q
V
L
E
T
L
L
E
E
Q
T
D
A
F
K
A
L
I
A
K
P
A
RD
T
K
D
R
E
A
L
G
K
E
P
K
K
L
K
I
GE
E
E
Y
S
L
N
E
D
F
V
N
D
C
L
K
L
A
D
E
L
DLN
E
K
E
S
A
R
I
L
I
D
C
D
A
E
GDVETQSRP
L
W
E
C
G
V
I
R
F
H
Q
E
R
K
Y
L
L
D
C
M
R
L
I
L
E
I
A
A
DEDID
A
G
L
Q
E
S
F
G
V
A
A
E
D
KIFGIPPPWERQVKK
F
I
P
R
C
M
E
A
M
K
G
V
R
S
M
L
Q
C
M
A
D
K
A
N
A
R
N
M
L
Q
Q
A
SLVRPLDN
Q
E
T
L
D
F
S
R
L
S
L
V
E
Q
H
E
C
L
A
S
I
L
H
A
A
V
Q
R
HHAT
I
A
D
F
Q
D
F
I
K
I
L
R
K
WDKYD
H
F
L
I
H
L
I
P
V
L
A
A
Y
I
T
E
FGSPEGMGDLQ
Q
A
R
R
L
N
D
F
I
CKGGDEDSWAL
P
V
L
G
A
A
V
R
A
W
W
I
A
E
H
N
GFYLDDTVQDLRGINL
D
E
E
D
E
Q
R
T
K
Q
F
L
D
A
L
K
E
G
A
F
D
F
I
L
S
V
A
A
D
C
K
AQEWQDPSQLGARQWLQRKIPSLPSEPFPFS
H
F
L
Q
H
S
L
M
V
H
L
E
G
F
V
D
A
T
I
S
NL
P
D
V
L
R
K
L
R
T
E
E
D
E
Q
R
Q
L
RPNHEQDM
D
L
E
R
F
L
I
I
I
S
Y
A
Y
EGR
P
D
A
A
M
S
FWEDPDS
N
L
A
G
F
L
Q
W
A
S
RRAS
T
P
L
V
S
A
F
C
E
M
L
R
C
L
A
DN
E
E
C
A
T
A
A
H
N
F
L
LDEGHQASGKMKRSQSLT
W
S
Q
I
F
K
E
L
E
Y
F
T
T
K
V
C
SEIE
P
E
S
A
L
M
L
E
C
Y
L
R
L
I
A
K
L
A
T
E
S
E
I
A
R
K
R
L
I
M
DEDFN
L
V
D
T
I
L
K
L
S
V
G
VIP
H
R
L
R
A
C
I
F
Y
V
L
K
A
L
M
I
RKT
H
E
E
L
D
A
M
W
R
W
V
E
A
W
M
T
NPFPG
P
Q
E
C
M
E
M
M
F
R
E
F
G
TG
F
E
Q
S
N
A
F
I
Q
L
L
T
T
L
L
VPPEGLNSLNDSVPFPEWLGSSIRTLGI
E
P
Y
V
D
F
V
F
D
V
F
A
NRTKDISD
P
S
Q
L
R
I
L
R
L
S
C
L
D
F
V
M
V
C
L
V
T
FN
E
D
L
I
V
L
G
H
E
SNISIDDAMA
A
T
N
L
A
T
Y
V
R
L
H
P
F
-----
S
R
V
M
E
W
L
F
N
E
K
V
I
T
S
------------
L
I
N
T
I
-------
H
Q
D
P
I
S
L
G
S
A
---
S
-----
P
D
S
P
L
V
V
S
---------
I
L
----
R
A
---
I
Q
V
M
I
K
-
A
L
----
E
L
Q
E
T
Y
L
H
L
V
R
P
E
V
L
R
Y
Q
GEAGVRRKPVANAAYSAFEDGILSH
L
S
L
V
V
D
L
G
K
Y
C
N
LGH
A
E
L
T
L
A
C
L
K
L
L
E
K
I
ST------------------
5
HHSearch
19.61
24%
165
- C6 -
2WWB
-
RL26A_YEAST
L:
[3-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
S
-------
L
D
V
S
S
D
R
R
K
A
---
R
K
A
---
Y
------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
15.90
18%
172
- C2 -
2K9J
-
?
B:
[714-724]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
W
K
L
L
I
T
I
H
D
R
----------------------------------------------------------------------------------------------------------------------------------------------