@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu18900: (2016-06-30 )
MADRYVLIEVNEDGEGRLKDEAVTWIDFRLSIVDFNASEGLNQLMEQISKDVKDELVLVLFNYRVKSSYDSWSGATEYEDFFDVEFFKVIKKNYKKFYQGLVTVELDVGINGFDNIESMPTDSNQNYYRNLIAEWEEFYNEDFIPLSLNKR
Atome Classification :
(20 SA)
-------------.........10.......-----------.20.......---------.------30...--.....40........50-..----.-----.-.....60.----.......70....-....80..----......90........100..-------..---...110.-....-----..120.......130...-....140.......150----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------MAD
R
Y
V
L
I
E
VNEDGEGRL-----------KDE
A
V
T
W
I
D
F
---------
R
------
L
S
I
V
D--F
N
A
S
E
G
L
N
Q
L
M
E
Q
I
S
K
--
D
V
----
K
-----D-
E
L
V
L
V
L
F
N
----
Y
R
VKSSYDSWSGA-T
E
Y
E
D
F
F
D
----
V
E
F
F
K
V
I
K
K
N
Y
K
K
F
YQG
L
V
T
V
-------
E
L
---
D
VGINGF-DNIE-----SMPTDSN
Q
N
Y
Y
R
N
L
I
A
E
W
-
E
E
F
YNEDFIPLSLNKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
66.40
33%
-246
- C5 -
1OXA
2
CPXJ_SACEN
A:
[213-266]
------------------
A
L
I
S
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
66.35
33%
-246
- C5 -
1EUP
3
CPXJ_SACEN
A:
[213-266]
------------------
A
L
I
S
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
65.98
33%
-229
- C5 -
1JIN
2
CPXJ_SACEN
A:
[213-266]
------------------
A
L
I
S
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
65.54
33%
-244
- C5 -
1EGY
3
CPXJ_SACEN
A:
[213-266]
------------------
A
L
I
S
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
63.56
19%
-147
- C3 -
1RKI
2
?
A:
[1-101]
--------------
M
K
K
H
I
I
I
K
T
I
P
K
K
E
E
I
I
-----------
S
R
D
L
C
D
C
I
Y
Y
---------
Y
------
D
N
S
V
----------------
I
C
K
--
P
I
----
G
-----
P
-
S
K
V
Y
V
S
T
S
----------------
L
-
E
N
L
E
K
C
L
Q
----
L
H
Y
F
K
K
L
V
K
N
I
E
I
F
------------------------------------
D
E
V
H
N
S
K
P
N
C
D
K
C
L
I
V
E
I
-
G
---
G
V
Y
F
V
R
R
V
N
G
V
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.79
31%
22
- C5 -
3PZG
1
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
62.54
31%
26
- C5 -
3PZN
2
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.51
31%
34
- C5 -
3PZI
1
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
61.79
31%
19
- C5 -
3PZQ
3
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
61.67
31%
24
- C5 -
3PZ9
-
?
A:
[104-173]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.14
31%
33
- C5 -
3PZM
2
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
60.88
31%
31
- C5 -
3PZO
4
?
A:
[94-163]
----------------------------------------------------------------------------
N
A
Q
N
G
F
E
R
L
D
Y
T
I
A
K
A
K
E
L
----
G
-----
I
-
K
L
I
I
V
L
V
N
NWDD
F
G
G
M
N
Q
Y
V
R
W
F
G
G
-
T
H
H
D
D
F
Y
R
----
D
E
---
R
I
K
E
E
Y
K
K
Y
V
S
F
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
60.52
33%
-232
- C5 -
1JIO
2
CPXJ_SACEN
A:
[213-266]
------------------
A
L
I
R
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
60.51
33%
-224
- C5 -
1Z8O
3
CPXJ_SACEN
A:
[214-267]
------------------
A
L
I
R
V
Q
D
D
D
D
G
R
L
-----------
S
A
D
E
L
T
S
I
A
L
---------
V
------
L
L
L
A
G
--
F
E
A
S
V
S
L
I
G
I
G
T
Y
L
L
L
--
T
H
----
P
-----
D
-
Q
L
A
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
60.50
16%
-52
- C1 -
4UMW
2
?
A:
[124-730]
RLKEN
L
P
L
I
T
L
I
V
M
M
A
I
S
W
G
L
E
Q
F
N
H
P
F
G
Q
L
-----------
A
F
I
A
T
T
L
V
G
L
---------
Y
P
I
A
R
Q
A
L
R
L
I
K
--
S
G
S
Y
F
A
I
E
T
L
M
S
V
A
A
I
--
G
A
----
L
F
I
GA
T
A
-
E
A
A
M
V
L
L
L
----
F
L
I
G
E
R
L
E
G
W
A
A
S
-
R
V
----------
S
A
L
M
A
L
K
P
E
T
A
T
R
L
R
N
G
E
R
E
E
-------
V
A
---
I
N
S
L
R
P
G
-
D
V
I
E
V
A
AGG
R
L
P
A
D
G
K
L
L
---
S
P
F
A
S
F
D
E
S
A
L
T
G
E
S
I
P
V
E
R
A
T
G
D
K
V
P
A
GATSVD
R
L
V
T
L
E
VLSEPGAS
A
I
D
R
I
L
K
L
I
E
E
A
E
E
R
R
A
P
I
E
R
F
I
D
R
F
S
R
I
Y
T
P
A
I
M
A
V
A
L
L
V
T
L
VPPLLFAAS
W
Q
E
W
I
Y
K
G
L
T
L
L
L
I
G
CPCALVI
S
T
P
A
A
I
T
S
G
L
A
A
A
A
R
R
G
A
L
I
K
G
G
A
A
L
E
Q
L
G
R
VT
Q
V
A
F
D
K
TGTLTVG
K
P
R
V
T
A
I
H
P
A
TGIS
E
S
E
L
L
T
L
A
A
A
V
E
QGATH
P
L
A
Q
A
I
V
R
E
A
Q
V
A
ELAIPTAESQRALVG
S
G
I
E
A
Q
V
NG
E
R
V
L
I
C
A
AGKHPADAF
A
G
L
I
N
E
L
E
S
A
G
Q
T
V
V
L
V
V
R
NDDVL
G
I
I
A
L
Q
DTLRAD
A
A
T
A
I
S
E
L
N
A
L
G
V
K
G
V
I
L
T
GDN
P
R
A
A
A
A
I
A
G
E
L
G
L
E
F
K
A
GLL
P
E
D
K
V
K
A
V
T
K
L
N
Q
H
A
P
L
A
M
V
G
DGIND
A
P
A
M
K
A
AA
I
G
I
A
M
GSGT
D
V
A
L
E
T
ADAALTHNH
L
R
G
L
V
Q
M
I
E
L
A
R
A
T
H
A
N
I
R
Q
N
I
T
I
A
L
G
L
K
G
I
F
L
V
T
T
L
L
GMTG
L
W
L
A
V
L
A
D
T
G
A
T
V
L
V
T
A
N
A
L
RLLR
35
Fugue
59.35
12%
-79
- C3 -
2AYA
-
A:
[1-128]
---------------
M
K
A
L
E
H
E
K
T
P
E
L
A
A
K
L
-----------
A
A
E
A
I
E
R
D
P
W
---------
A
------
A
Q
V
S
Q
--
L
S
L
P
K
L
V
E
Q
V
A
L
N
A
W
K
--
E
E
----
S
-----
D
-
N
A
V
C
L
H
L
R
------------------
S
S
Q
R
H
L
N
N
----
R
G
A
Q
Q
K
L
A
E
A
L
S
M
L
K
G
S
T
V
E
L
-------
T
I
---
V
E
D
D
N
P
A
-
V
R
--------
T
P
L
E
W
R
Q
A
I
Y
E
E
K
L
A
Q
A
-
R
E
S
I
I
A
D
N
N
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
52.20
13%
-127
- C3 -
1W9G
-
ERH_HUMAN
A:
[1-102]
-------------
M
S
H
T
I
L
L
V
Q
P
T
K
R
P
E
G
R
-----------------
T
Y
A
D
Y
---------
E
--------------
S
V
N
E
C
M
E
G
V
C
K
M
Y
E
E
--
H
L
----
K
-----
R
-
M
-----
N
P
----
N
S
P
S
I
T
Y
D
-------------------------
I
S
Q
L
F
D
F
I
D
D
L
A
D
L
-------
S
C
---
L
V
Y
R
A
----
D
T
Q
-----
T
Y
Q
P
Y
N
K
D
W
I
K
E
K
I
Y
V
L
L
-
R
R
Q
A
Q
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
51.48
20%
10
- C5 -
4LB8
1
?
A:
[24-110]
-------------------------------------------------------------
D
------
G
T
M
I
K
--
F
K
D
V
E
S
Y
E
N
A
L
L
K
V
S
---
A
M
----
S
-----
T
S
E
Q
V
S
F
L
N
S
----
L
S
F
K
S
Q
M
I
L
M
Q
E
A
D
G
E
L
D
K
I
C
N
Q
AAD
K
A
E
F
D
V
L
Y
E
K
Y
K
H
K
Y
G
D
V
F
----------
M
---
F
N
T
I
D
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
49.17
10%
87
- C2 -
4LVI
4
PRE_STRAG
A:
[1-194]
--S
Y
M
V
A
R
M
Q
K
M
K
A
G
N
L
G
G
A
F
K
H
N
E
R
V
S
N
K
D
-----------
I
N
P
S
R
S
H
L
N
Y
---------
E
------
L
T
D
R
D
RS
V
S
Y
E
K
Q
I
K
D
Y
V
N
E
N
K
V
--
S
N
RAIR
K
-----
D
-
A
V
L
C
D
E
W
I
----
I
T
S
D
K
D
F
F
E
K
L
D
E
-
E
Q
T
R
T
F
F
E
-----
T
A
K
N
Y
F
A
E
N
Y
G
E
S
N
I
A
Y
A
S
V
H
LDES
T
P
H
M
---
H
M
G
V
V
P
F
E
N
G
K
L
-----
S
S
K
A
M
F
D
R
E
E
L
K
H
I
Q
E
D
L
-
P
R
Y
M
S
D
H
G
F
E
L
E
R
G
K
L
NSEAKHKT
V
A
E
F
K
R
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
48.78
13%
35
- C3 -
2TMD
-
DHTM_METME
A:
[490-645]
---------------------
R
W
N
T
D
G
T
N
C
L
THDPIPGADAS
L
P
D
Q
L
T
P
E
Q
V
M
D
GK
K
K
I
G
K
R
------
V
V
I
L
N
--
A
D
T
Y
F
M
A
P
S
L
A
E
K
L
A
T
--
A
-----
G
-----
H
-
E
V
T
I
V
S
G
V
----
H
L
A
N
Y
M
H
F
T
L
E
Y
P
-
N
M
M
R
R
L
H
E
----
L
H
V
E
E
L
G
D
H
F
C
S
R
I
E
P
G
R
M
E
I
-------
Y
N
IWG
D
G
S
K
R
T
Y
-
R
G
P
G
-----
V
S
P
R
D
A
N
T
S
----------
H
R
W
I
E
F
D
S
L
V
L
V
T
G
R
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------