@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19130: (2016-06-30 )
MKKKRKGCFAAAGFMMIFVFVIASFLLVLLFFNRDLIKKLPIDTKTIVLERLTDYKPLVEEELESQGLSNYTSLILGMMYQESKGKGNDPMQSSESLGLKRNEITDPQLSVKQGIKQFTLMYKTGKEKGVDLDTIIQSYNMGAGYIDFVAEHGGTHTEELAKQYSEQQVKKNPDLYTCGGNAKNFRYPYCYGDYTYAEKVKEKTKTVEESLQVATLETMESKAHE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60.......--.70.......-.80..---.-----..---.--------------------------------------------------.---------.90-.......---------.------------100---------------....-.....110.......120.....------.---.-----130.....-....140.....-..150.......-------160...-....170--....-..-.-180.......190...-......200------.......210-........220....----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MKKKRK
G
C
F
A
A
A
G
F
M
M
I
F
V
F
V
I
A
S
F
L
L
V
L
L
F
FN
R
D
L
I
K
KLPID
T
K
T
I
V
L
E
R
LTDY
K
P
L
V
E
E
E
L
E
SQG
L
--
S
N
Y
T
S
L
I
L
G
M
-
M
Y
Q
ES---K-----GK---G--------------------------------------------------N---------DPM-QS
S
E
SLG---------L------------K-----------------RNEI-TDP
Q
L
S
V
K
Q
G
I
K
Q
F
T
L
M
Y
KTGKE------K---G-----V--
D
L
D
T
I
-
I
Q
S
YNMG
A
G
Y
I
D
-
F
V
A
EHGGT
H
T
E
E
-------
L
A
K
Q
Y
S
-
E
Q
Q
V
KKN--P
D
L
Y
-TC-G-GNAKNFRYP
Y
C
--YGD-
Y
T
Y
A
E
K
V
K
E
------
K
T
K
T
V
E
E
S
L
--
Q
V
A
T
L
E
T
M
E
-
S
KAHE----------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
75.29
34%
-42
- C- -
4FDY
-
?
A:
[46-227]
-------------------------------------------
G
V
T
V
S
P
E
V
L
A
-
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
--
E
D
Y
V
S
Y
I
L
A
I
-
M
Q
V
E
S
---
G
-----
G
T
---
A
--------------------------------------------------
E
---------
D
V
M
-
Q
S
S
E
S
L
G
---------
L
------------
P
-----------------
P
N
S
L
-
S
T
E
E
-
S
I
K
Q
G
V
K
Y
F
S
E
L
L
T
S
A
E
Q
------
Q
---
G
-----
V
--
D
I
D
S
V
-
I
Q
S
Y
N
Y
G
G
G
F
L
N
-
Y
V
R
S
H
G
K
K
Y
T
Y
E
-------
L
A
E
Q
F
S
K
E
K
S
G
G
Q
K
--
A
D
Y
P
-
N
P
-
I
-
A
I
P
V
N
G
G
W
R
Y
N
--
Y
G
N
-
Q
F
Y
V
Q
L
V
S
Q
Y
LTDTS
P
T
E
F
D
D
E
T
V
--
Q
V
I
M
D
E
A
L
-----------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
72.54
37%
-17
- C1 -
4HPE
4
?
A:
[27-178]
------------------------------------------------------
H
Q
P
M
V
E
K
Y
A
R
E
N
G
I
--
S
E
Y
V
N
V
L
L
A
I
-
I
Q
V
E
S
---
G
-----
G
T
---
A
--------------------------------------------------
E
---------
D
V
M
-
Q
S
S
E
S
L
G
---------
L
------------
P
-----------------
P
N
S
L
--
D
T
E
S
S
I
K
Q
G
C
K
Y
F
A
S
L
L
S
S
S
K
N
------
Q
---
G
-----
I
D-
D
L
N
V
A
-
I
Q
S
Y
N
Y
G
G
G
Y
V
G
-
Y
V
A
G
K
G
K
K
H
T
F
N
-------
L
A
E
S
F
A
-
R
E
K
S
G
G
K
--
K
V
T
Y
-
T
N
-
P
I
A
V
A
K
N
G
G
W
R
W
N
--
Y
G
N
-
M
F
Y
V
E
L
V
N
Q
------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
70.36
31%
48
- C- -
4FDY
-
?
A:
[46-340]
--------------------------------------------
G
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
--
E
D
Y
V
S
Y
I
L
A
I
M
Q
-
V
E
S
---
G
-----
G
T
---
A
--------------------------------------------------
E
---------
D
-
V
M
Q
S
S
E
S
L
G
---------
L
------------
P
-----------------
P
N
S
L
-
S
T
E
E
-
S
I
K
Q
G
V
K
Y
F
S
E
L
L
T
S
A
E
Q
------
Q
---
G
-----
V
--
D
I
D
S
V
-
I
Q
S
Y
N
Y
G
G
G
F
L
N
-
Y
V
R
S
H
G
K
K
Y
T
Y
E
-------
L
A
E
Q
F
S
-
K
E
K
S
G
G
Q
--
K
A
D
Y
P
N
P
-
I
-
A
I
P
V
N
G
G
W
R
Y
N
--
Y
G
N
-
Q
F
Y
V
Q
L
V
S
Q
------
Y
L
T
D
T
S
P
T
E
--
F
D
D
E
T
V
Q
V
I
M
D
E
A
L
K
Y
EGFPYVFGGASPTTSFDS
G
L
I
Q
W
V
Y
D
K
A
G
I
S
L
P
RV
A
Q
D
Q
Y
D
A
T
Q
E
I
S
MEEAQAG
D
L
I
F
F
H
STYNAGTYVT
H
V
A
I
Y
L
E
GNRFYHAGDP
I
G
Y
G
D
LSS
R
Y
W
Q
D
H
LI
G
A
R
R
V
I
H
N
21
HHSearch
59.65
33%
49
- C- -
4FDY
-
?
A:
[46-210]
--------------------------------------------
G
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
ED
Y
V
--
S
Y
I
L
A
I
-
M
Q
V
E
S
---
G
-----
G
T
---
A
--------------------------------------------------
E
---------
D
V
M
-
Q
S
S
E
S
L
G
---------
L
------------
P
------------------
P
N
S
-
L
S
T
E
E
S
I
K
Q
G
V
K
Y
F
S
E
L
L
T
S
A
E
Q
------
Q
---
G
-----
V
--
D
I
D
S
V
-
I
Q
S
Y
N
Y
G
G
G
F
L
N
-
Y
V
R
S
H
G
K
K
Y
T
Y
E
-------
L
A
E
Q
F
S
-
K
E
K
S
G
G
Q
--
K
A
D
Y
-
P
N
P
I
-
A
I
P
V
N
G
G
W
R
Y
N
--
Y
G
N
-
Q
F
Y
V
Q
L
V
S
Q
------
Y
L
T
D
T
S
------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
54.11
24%
-25
- C1 -
4CFP
3
MLTC_ECOLI
A:
[167-291]
-----------------------------------------------
L
D
K
R
A
H
K
Y
L
G
M
V
R
Q
A
S
R
K
Y
G
V
--
D
E
--
S
L
I
L
A
I
-
M
Q
T
Q
S
---
S
-----
F
N
---
P
Y
A
V
S
RSDA------------------------------------------
L
---------
G
L
M
-
Q
V
V
Q
H
T
A
---------
G
------------
K
D
V
F
R
S
Q
GK
S
G
T
P
S
----
R
S
F
L
-
F
D
P
A
S
N
I
D
T
G
T
A
Y
L
A
M
L
N
N
V
Y
L
G
GIDN--
P
---
T
-----
S
--
R
R
Y
A
V
-
I
T
A
Y
N
G
G
A
G
S
V
L
-
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
51.32
18%
-10
- C1 -
4HJZ
2
EMTA_ECOLI
A:
[30-162]
------------------------------------------
W
N
A
K
V
P
V
Q
R
A
M
Q
W
M
P
I
S
Q
K
A
G
A
A
W
G
V
--
D
P
--
Q
L
I
T
A
I
-
I
A
I
Q
S
---
G
-----
G
N
---
P
NAVSKSNA------------------------------------------
I
---------
G
L
M
-
Q
L
K
A
S
T
S
G
R
D
V
Y
R
R
M
G
W
S
G
E
P
--------
T
-----------------
T
S
E
L
-
K
N
P
E
R
N
I
S
M
G
A
A
Y
L
N
I
L
E
T
G
P
L
A
------
G
I--
E
-----
D
P
K
V
L
Q
Y
A
L
V
V
S
Y
A
N
G
A
G
A
L
L
R
T
F
S
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
47.67
19%
-85
- C1 -
1YRO
2
LALBA_MOUSE
A:
[16-58]
--------------------------------------------------------------
D
G
Y
Q
G
I
--
S
L
--
L
E
W
A
C
V
-
L
F
H
T
S
---
G
-----
Y
D
---
T
Q
A
V
V
N
D
NG
S
T
E
---------------------------------------
Y
---------
G
L
F
-
Q
I
S
D
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
45.01
14%
-9
- C1 -
1QUS
3
MLTB_ECOLI
A:
[93-241]
-------------------------------------------------
V
F
W
N
Q
Y
E
D
A
L
N
R
A
W
Q
V
Y
G
V
--
P
P
--
E
I
I
V
G
I
-
I
G
V
E
T
---
R
-----
W
G
RVM
G
KTR
I
L
D
A
L
A
T
L
S
F
NYPRR
A
E
Y
F
S
G
E
L
E
T
F
L
L
M
A
R
D
E
QDDPLN
L
K
G
S
FAGA
M
---------
G
Y
G
-
Q
F
M
P
S
S
Y
---------
K
Q
YAVDFSGD---
G
-----------------
H
I
N
L
-
W
D
P
V
D
A
I
G
S
V
A
N
Y
F
K
A
H
G
W
V
K
------------
G
-----
D
--
Q
V
A
V
M
-
A
N
G
Q
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
44.91
22%
19
- C1 -
4G9S
1
?
A:
[42-157]
----------------------------------------------
H
D
L
V
R
M
N
K
Y
K
E
L
I
T
R
V
G
Q
K
H
G
L
--
D
P
--
A
I
I
A
G
I
-
I
S
R
E
S
---
R
-----
A
G
---
S
ALDHGWGDHGKG--------------------------------------
F
---------
G
L
M
-
Q
V
D
K
R
Y
H
---------
K
------------
I
------------------
V
G
A
-
W
D
S
E
K
H
I
S
Q
G
T
E
I
L
I
E
F
I
R
R
I
Q
A
K
F
PVWP
K
---
E
-----
H
--
Q
L
K
G
G
-
I
S
A
Y
N
A
G
D
K
N
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
43.44
18%
-0
- C1 -
1QSA
6
SLT_ECOLI
A:
[451-565]
----------------------------------------------------
L
A
Y
N
D
L
F
K
R
Y
T
S
G
K
E
I
--
P
Q
--
S
Y
A
M
A
I
-
A
R
Q
E
S
---
A
-----
W
N
---
P
KVKSPV
G
A
------------------------------------------
S
---------
G
L
M
-
Q
I
M
P
G
T
A
---------
T
H
T
V
K
M
F
SIPGYS
S
-----------------
P
G
Q
L
-
L
D
P
E
T
N
I
N
I
G
T
S
Y
L
Q
Y
V
Y
Q
Q
F
------------
G
-----
N
--
N
R
I
F
S
-
S
A
A
Y
N
A
G
P
G
R
V
R
T
W
L
G
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
43.15
12%
-86
- C3 -
5DIR
11
?
A:
[21-177]
---
P
D
V
D
R
F
G
R
L
P
W
L
W
I
T
V
L
V
F
V
L
D
Q
V
S
K
A
F
F
Q
A
E
L
S
M
Y
Q
Q
I
V
V
I
P
D
L
F
S
W
T
L
A
Y
N
T
G
A
A
F
S
F
L
A
D
S
---
S
G
W
Q
R
W
L
F
A
L
-
I
A
I
V
V
---
S
-----
A
S
---
L
--------------------------------------------------
V
---------
V
W
L
-
K
------------------------------------------------------
R
L
K
K
G
E
T
W
L
A
I
A
L
A
L
V
L
G
G
A
------
L
---
G
-----
N
--
L
Y
D
R
M
-
V
L
G
H
-----
V
V
D
-
F
I
L
V
H
W
Q
N
---------------------------------------------
R
W
Y
--
F
P
A
-
F
N
L
A
D
S
A
I
T
------
V
G
A
V
M
L
A
L
D
--
M
F
-----------------------------------------------------------------------------------------------------------------------------
31
HHSearch
42.50
22%
48
- C1 -
1GBS
-
LYG_CYGAT
A:
[40-155]
----------------------------------------------
R
D
L
K
A
M
D
R
Y
K
T
I
I
K
K
V
G
E
K
L
C
V
--
E
P
--
A
V
I
A
G
I
-
I
S
R
E
S
---
H
-----
A
G
---
K
VLKNGWGDRGNG--------------------------------------
F
---------
G
L
M
-
Q
V
D
K
R
S
H
---------
K
------------
P
-----------------
Q
-
G
T
-
W
N
G
E
V
H
I
T
Q
G
T
T
I
L
T
D
F
I
K
R
I
Q
K
K
F
PSWT
K
---
D
-----
Q
--
Q
L
K
G
G
-
I
S
A
Y
N
A
G
A
G
N
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
42.41
15%
42
* C1 *
4P0G
6
MLTF_PSEAE
A:
[261-432]
-------------------------------------------------
Q
R
L
P
R
Y
E
S
H
F
K
Q
S
G
K
Q
L
D
T
--
D
W
--
R
L
L
A
A
I
-
G
Y
Q
E
S
---
L
-----
W
Q
---
P
GATSKTGV------------------------------------------
R
---------
G
L
M
-
M
L
T
N
R
T
A
Q
A
-------
M
------------
G
-----------------
V
S
N
R
-
L
D
P
K
Q
S
I
Q
G
G
S
K
Y
F
V
Q
I
R
S
E
L
P
E
------
S
IKE
P
-----
D
--
R
S
W
F
A
-
L
A
A
Y
N
I
G
G
A
H
L
E
-
D
A
R
K
M
A
E
K
E
G
L
N
-------
P
N
K
W
L
D
-
V
K
K
M
L
P
R
LA
Q
K
Q
W
-
Y
A
-------
K
T
R
Y
G
Y
A
R
G
G
E
T
-
V
H
F
V
Q
N
V
R
R
------
Y
Y
D
I
L
T
W
V
T
---------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
40.36
16%
-12
- C1 -
3W6B
1
?
A:
[32-148]
-----------------------------------------
V
T
K
P
A
E
V
P
S
R
I
W
T
Y
V
M
N
A
D
N
A
Y
G
K
G
G
D
--
F
A
--
L
L
L
S
A
V
-
I
K
K
E
S
---
Y
-----
F
G
---
D
--------------------------------------------------
G
LSGSPSAGD
G
L
M
-
Q
V
E
P
N
T
R
N
A
Y
L
S
Q
F
S
-
A
K
YG---------
H
-----------------
A
Y
N
H
-
S
S
E
Q
D
Q
V
Y
M
G
S
L
I
L
N
E
K
I
V
R
F
------------
G
--------
S
I
Y
S
G
-
L
L
H
Y
N
G
G
D
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
38.70
14%
2
- C1 -
1QSA
9
SLT_ECOLI
A:
[451-618]
----------------------------------------------------
L
A
Y
N
D
L
F
K
R
Y
T
S
G
K
E
I
--
P
--
Q
S
Y
A
M
A
I
-
A
R
Q
E
S
---
A
WNP--
K
V
-----------------------------------------------------------------
K
S
-
P
V
G
-
A
S
G
---------
L
------------
M
-------------------------
Q
I
M
P
G
T
A
T
H
T
V
K
M
F
S
I
P
G
Y
S
------
S
---
P
-----
G
--
Q
L
L
D
P
-
E
T
N
I
N
I
G
T
S
Y
L
Q
-
Y
V
Y
Q
Q
F
G
-----NN
R
I
F
S
S
A
A
Y
N
A
G
-
P
G
R
V
R
T
W
--
L
G
N
S
-
A
G
-
R
-
I
D
A
V
A
F
V
E
S
I
P
--
F
S
E
T
R
G
Y
V
K
N
V
L
A
------
Y
D
A
Y
Y
R
Y
F
M
GD
K
P
T
L
M
S
A
T
E
-
W
G
R
R
Y
----------------------------------------------------------------------------------------------------------------
41
HHSearch
37.61
19%
-73
- C1 -
1QQY
-
LYSC1_CANLF
A:
[20-63]
----------------------------------------------------------------
F
H
G
Y
--
S
L
--
A
N
W
V
C
M
-
A
E
Y
E
S
---
N
-----
F
N
---
T
Q
A
F
N
G
R
NSNG
S
S
D
-------------------------------------
Y
---------
G
I
F
-
Q
L
N
S
K
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
37.03
16%
39
- C1 -
3GXR
2
?
A:
[36-158]
--------------------------------------------
A
Q
T
D
A
G
R
M
E
K
Y
K
S
F
I
N
N
V
A
K
K
H
V
V
--
D
P
--
A
V
I
A
A
I
-
I
S
R
E
S
---
R
AGNVI
F
N
---
T
TPPGWGDNYNG---------------------------------------
F
---------
G
L
M
-
Q
V
D
K
R
Y
H
---------
E
------------------------------
P
R
G
A
-
W
N
S
E
E
H
I
D
Q
A
T
G
I
L
V
N
F
I
Q
L
I
Q
K
------
K
F
--
P
SWS
T
E
Q
--
Q
L
K
G
A
-
I
A
A
Y
N
T
G
D
G
R
V
E
-
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
36.62
9%
-27
- C1 -
4M5E
3
?
A:
[225-334]
------------------------------------------------------
R
A
K
V
M
S
A
A
A
R
K
Y
D
L
--
T
P
--
Q
L
I
G
A
I
-
I
L
A
E
Q
R
D
Q
T
-----
R
D
---
E
D
A
K
D
Y
Q
A
A
V
SIKSAN
T
S
---------------------------------
I
---------
G
L
G
-
Q
V
V
V
S
T
A
---------
I
K
Y
EL--------
F
TDLLG
Q
P
V
R
R
G
LS
R
K
A
V
A
T
L
L
-
A
S
D
E
F
N
I
F
A
T
A
R
Y
I
R
Y
V
A
N
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
36.44
15%
-8
- C- -
4XP8
-
?
A:
[19-104]
--------------------------------------------------------
D
C
F
E
I
T
G
K
A
Y
N
I
--
D
P
--
L
I
L
K
A
I
-
A
W
N
E
S
---
K
-----
N
K
---
N
GIKSKINKNG
T
Y
N
-------------------------------------
I
---------
G
I
M
-
Q
I
N
S
S
H
L
D
L
L
S
K
F
N--
I
------------
S
-----------------
E
D
D
L
L
N
D
A
C
I
N
I
S
V
A
G
Y
I
L
A
S
N
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
36.30
12%
-66
- C1 -
1JUG
-
LYSC1_TACAC
A:
[18-62]
--------------------------------------------------------------
N
G
Y
Q
H
I
--
T
L
--
P
N
W
V
C
T
-
A
F
H
E
S
---
S
-----
Y
N
---
T
R
A
T
N
H
N
TDG
S
T
D
--------------------------------------
Y
---------
G
I
L
-
Q
I
N
S
R
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------