@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19669: (2016-07-01 )
MIAKMMEALDGERFDIIMEKTLKGMTRVMIWGCLPYFLYVLIRMFTN
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-..---.....--.10----........-.20....----..----..--30...--.-.....40......----------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
I
A
---
K
M
M
E
A
--LD-----G
E
R
F
D
I
I
M
-
E
K
T
L
K
G
M
----
T
R
----
V
M
--
I
-
W
G
C
--
L
-
P
Y
F
L
Y
V
L
I
R
M
FTN----------------------------------------------------------------------------------------------------------------------
24
Fugue
59.49
27%
-60
- C5 -
4QRN
10
?
A:
[22-373]
------------------------------------------------------------------------------SMTQ
D
L
K
T
GGEQGY
L
R
I
A
T
E
E
A
F
A
T
R
E
I
I
D
V
Y
L
R
M
I
R
D
GTAD
K
G
M
V
S
L
W
G
F
YAQSPS
E
R
A
T
Q
I
L
E
R
L
L
DLG
E
R
R
I
A
D
M
D
A
T
GIDKAILALTSPGVQPLHD
L
D
E
A
R
T
L
A
T
R
A
N
D
T
L
A
D
A
C
Q
K
Y
P
DR
F
I
G
M
G
T
V
A
PQD
P
E
W
S
A
R
E
I
H
R
G
A
R
ELGFK
G
I
Q
I
NSHTQGRYLDEEFF
D
P
I
F
R
A
L
V
E
V
D
Q
P
L
Y
IHPATSPDS
M
-
I
D
---
P
M
L
E
A
G-
L
D
-----
G
A
I
F
G
F
G
V
-
E
T
G
M
H
L
L
----
R
L
----
I
T
I
G
I
-
F
D
K
--
Y
-
P
S
L
Q
I
M
V
G
H
M
G
E
A
LPYW
L
Y
R
L
D
Y
M
H
Q
A
G
V
R
S
QRYERMKPLKKT
I
E
G
Y
L
K
S
N
V
L
V
T
NSGVAW
E
P
A
I
K
F
C
Q
Q
V
M
GEDR
V
M
Y
A
MDYPYQYV
A
D
E
V
R
A
M
D
A
MDMS
A
Q
T
K
K
K
F
F
Q
T
N
A
E
K
W
F
KL------------
18
Fugue
57.11
19%
-65
- C5 -
2JFV
1
?
A:
[19-288]
-----------------------------------------------------------------------------------------------------------------------------M
I
R
L
T
D
N
R
P
I
G
F
I
D
SGVGG
L
T
V
V
K
E
A
L
K
QLPN
E
N
I
L
F
V
G
DTARCPYGPRP
A
E
Q
V
I
Q
Y
T
W
E
M
T
D
Y
L
V
E
Q
GIKMLVIAC
N
T
A
T
A
V
A
L
E
E
I
K
A
A
LS
I
P
V
I
G
V
I
L
P
G
T
R
A
A
V
K
K
TQNKQ
V
G
I
I
G
T
I
G
T
V
K
S
Q
A
Y
E
K
A
L
K
E
K
VPELT
V
T
S
L
A
CP
K
-
F
V
---
S
V
V
E
S
NE
Y
H
-----
S
S
V
A
K
K
I
V
-
A
E
T
L
A
P
L
----
T
T
KKID
T
L
--
I
-
L
G
C
TH
Y
-
P
L
L
R
P
I
I
Q
N
V
M
G
E
N
V
Q
L
I
D
S
G
A
E
T
V
G
E
V
S
M
L
L
D
Y
F
NLSNSPQNGRT
L
C
Q
F
Y
T
TGS
A
K
L
F
E
E
I
A
E
D
W
L
GI
G
H
L
N
V
E
H
I
E
L----------------------------------------------------
12
HHSearch
56.33
31%
-333
- C5 -
1K8K
-
ARPC5_BOVIN
G:
[91-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
---
K
A
V
Q
S
--
L
D
-----
K
N
G
V
D
L
L
M
-
K
Y
I
Y
K
G
F
----
E
S
----------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
55.67
27%
36
- C5 -
3HSI
-
PSS_HAEIN
A:
[4-454]
N
K
T
K
R
A
E
Q
N
L
N
N
L
P
F
L
A
L
Q
AEQ
I
E
F
L
GS
S
A
E
F
K
T
Q
I
I
E
L
I
R
N
AK
K
R
I
Y
V
T
A
LYWQKD
E
A
G
Q
E
I
L
D
E
I
Y
R
V
K
Q
E
N
PHL
D
V
K
V
L
I
D
W
H
R
A
Q
R
NLLAT
N
A
D
W
Y
C
E
Q
R
Q
T
Y
QLPDDPNF
F
G
V
P
I
NTREVFGVLHV
K
G
F
V
F
D
DT
V
L
Y
S
G
ASINNVYLHQFEK
Y
R
Y
D
R
Y
Q
K
I
T
H
A
E
L
A
D
S
M
V
N
F
I
N
D
Y
LLDFSAVYPLDVTNRPRTKEIR
G
N
I
R
A
Y
R
K
D
L
A
Q
N
G
E
Y
S
L
K
S
AVKLPNV
L
S
V
S
P
L
F
G
L
G
A
SGNE
L
N
Q
V
I
E
D
L
F
L
Q
V
QK
K
L
V
I
C
T
P
YFNFPR
T
L
-
Q
H
---
K
I
A
T
L
--
L
E
N
----
G
K
R
V
E
I
I
V
G
D
K
V
A
N
D
F
YIPP
E
Q
----
P
F
--
K
M
A
G
A
--
L
-
P
Y
L
Y
E
S
N
L
R
R
F
C
E
K
F
E
T
Q
I
E
S
G
QL
V
V
R
L
W
R
D
G
DN
T
Y
H
L
K
G
V
W
V
D
DRY
I
L
L
T
G
NNLNPRAWRL
D
A
E
N
G
L
L
I
Y
D
P
QQQLL
A
Q
V
E
K
E
Q
N
Q
I
R
Q
H
TKVLKHYTELEELNQYPE
P
V
Q
K
L
L
K
K
F
A
R
I
K
A
D
K
L
V
K
M
I
L
3
HHSearch
53.15
57%
-516
- C1 -
1C4E
-
GUR_GYMSY
A:
[9-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
--
I
-
P
Y
Y
L
-------------------------------------------------------------------------------------------------------------------------------
16
Fugue
49.12
19%
17
- C5 -
3ERM
-
?
A:
[21-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
D
R
---
K
L
A
D
A
--
H
D
Q
M
L
E
L
A
E
L
L
T
D
V
L
-
I
K
N
V
P
G
L
S
E
--
K
H
----
A
E
--
D
-
A
S
I
--
Y
M
A
K
N
R
A
V
F
A
A
A
F
K
N
NATALSELSEPA----------------------------------------------------------------------------------------------------------
20
Fugue
48.96
15%
-60
- C5 -
3OGI
-
ES6L6_MYCTU
A:
[13-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HG
A
M
I
R
---
A
Q
A
G
L
--
L
E
-----
A
E
H
Q
A
I
V
R
-
D
V
L
A
A
G
A
----
C
Q
----
E
F
--
I
-
T
Q
L
--
G
-
R
N
F
Q
V
I
Y
E
Q
A
N
------------------------------------------------------------------------------------------------------------------------
22
Fugue
44.07
15%
-25
* C5 *
1BG6
-
?
?:
[188-359]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
V
L
H
T
S
L
T
N
V
N
A
V
M
H
P
L
P
T
L
L
N
A
A
R
C
E
S
GTPFQYYLEGIT
P
S
-
V
G
---
S
L
A
E
K
--
V
D
-----
A
E
R
I
A
I
A
K
-
A
---------------------------
F
-
D
L
N
V
P
S
V
C
E
W
Y
P
A
T
I
Y
E
A
V
Q
G
NPAYRGIAGPINLNTRY
F
F
E
D
V
S
T
G
L
V
P
L
S
E
L
G
R
A
V
NVPT
P
L
I
D
A
V
L
D
L
I
S
S
L
IDTDFRKEGRTLEKLGLSGLT
A
A
G
I
R
S
A
V
E---------------------------
25
Fugue
41.02
24%
-98
- C3 -
2JYV
-
A:
[1-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
Q
C
P
D
S
Q
F
E
C
--
P
D
-----
F
S
T
C
C
V
M
V
-
D
G
S
--------------------
W
G
C
--
C
-
P
M
P
Q
-------------------------------------------------------------------------------------------------------------------------------
17
Fugue
40.63
11%
-84
- C5 -
1PP0
5
?
A:
[5-198]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NV
F
Q
P
V
D
QLPEDL
I
P
S
S
I
Q
V
L
K
F
S
G
K
Y
L
K
L
E
QD
K
A
Y
F
D
W
P
G
F
K
T
A
I
D
N
YTGED
L
S
F
D
K
Y
D
Q
S
T
I
N
Q
QSQE
V
G
A
M
V
D
K
I
A
K
F
L
-
H
D
---
A
F
A
A
V
--
V
D
-----
L
S
K
L
A
A
I
I
-
L
N
T
F
T
N
L
----
E
E
----
E
S
---------
S
-
S
G
F
L
Q
F
N
T
N
N
V
K
K
N
S
S
W
E
Y
R
V
L
F
S
V
P
FAPS
Y
F
Y
S
L
V
T
T
I
L
I
T
A
DIEEKTGWWGLTSSTKKN
F
A
V
Q
I
D
A
L
E
L
V
V
K
KGFKAP---------------------------------------------------
6
HHSearch
37.88
22%
-318
- C5 -
4HTT
-
ENLYS_BPT4 (first)
A:
[63-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
I
K
I
S
----
L
A
----
V
G
--
F
-
I
I
A
--
S
-
P
V
I
L
Y
Q
F
W
R
F
I
E
-----------------------------------------------------------------------------------------------------------------------
10
HHSearch
36.35
19%
0
- C- -
3DWL
-
ARPC5_SCHPO
G:
[92-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
---
A
F
V
K
E
--
C
S
-----
T
E
E
I
D
N
I
V
-
N
F
I
Y
R
G
L
----
A
N
----------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
32.15
15%
-49
- C5 -
1KAO
1
RAP2A_HUMAN
A:
[146-165]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
--
K
S
-----
K
T
M
V
D
E
L
F
-
A
E
I
V
R
Q
M
----
N
-----------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
31.31
10%
-63
- C5 -
1MH1
1
RAC1_HUMAN
A:
[159-178]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
S
A
--
L
T
-----
Q
R
G
L
K
T
V
F
-
D
E
A
I
R
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
29.89
22%
24
- C5 -
4V0K
1
?
A:
[150-167]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
--
L
T
-----
G
E
G
V
D
K
G
I
-
D
W
L
A
E
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
29.22
40%
148
- C5 -
1MXL
-
I:
[1-17]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RI
S
-
A
D
---
A
M
M
Q
A
--
L
L
-----
G
A
R
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
29.22
10%
-387
- C4 -
2KI9
-
A:
[11-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
----
L
A
----
V
L
--
L
-
I
C
W
--
F
-
P
V
L
A
L
M
A
H
S
L
A
------------------------------------------------------------------------------------------------------------------------
2
HHSearch
28.00
43%
-
- C5 -
1TM9
-
Y354_MYCGE
A:
[94-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
--
I
-
I
F
C
--
V
-
I
Y
F
L
Y
H
F
----------------------------------------------------------------------------------------------------------------------------
13
HHSearch
27.76
16%
-81
- C5 -
2H57
2
ARL6_HUMAN
A:
[167-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
--
I
K
-----
G
E
G
L
Q
E
G
V
-
D
W
L
Q
D
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.54
5%
-185
- C5 -
4KYU
2
DER_BACSU
A:
[144-162]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
G
--
T
H
-----
G
L
G
L
G
D
L
L
-
D
A
V
A
E
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------