@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19749: (2016-07-01 )
MYGYSGYGYGFGCGTNTFVLIVVLFILLIIVGAAFIC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10---........20....-----....30.---.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYGYSGYGY-GF---GCG
T
N
T
F
V
L
I
V
V
L
F
-----
I
L
L
I
I
V
G
---
A
AFIC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
60.69
26%
-81
* C8 *
2HG4
2
ERYA3_SACER
A:
[9-901]
EE
K
L
R
R
Y
L
K
R
T
V
T
E
L
D
S
V
T
A
R
L
R
E
V
E
H
R
A
G
EPIAIV
G
M
A
C
R
F
P
GDVDS
P
E
S
F
W
E
F
V
S
G
GGDAIAEAPADRGWEPDP
D
A
R
L
G
GMLAAAGDFDAGFFGIS
P
R
E
A
L
A
MD
P
Q
Q
R
I
M
L
E
I
S
W
E
A
L
E
R
A
GHDPVSLRGSA
T
G
V
F
T
G
V
G
T
VDYGPRPDEAPDEVLGY
V
G
T
G
T
A
S
S
V
A
S
G
R
V
A
Y
C
L
GLE
G
P
A
M
T
V
D
TACS
S
G
L
T
A
L
H
L
A
M
E
S
L
R
R
DECG
L
A
L
A
G
G
V
T
V
MSSP
G
A
F
T
E
F
R
S
Q
GGLAADGRCKPFSKAAD
G
F
G
L
A
E
G
A
G
V
L
VLQR
L
S
A
A
R
R
E
GRPVLAVLR
G
S
A
V
N
Q
DGASNGLTAPS
G
P
A
Q
Q
R
V
I
R
R
A
L
E
N
A
GVRAGDVDYVEAHGTGTRLG
D
P
I
E
V
H
A
L
L
S
T
YGAERDPD
D
P
L
W
I
G
S
VKSNIGHTQAA
A
G
V
A
G
V
M
K
A
V
L
A
L
R
H
GEMPRTLHFDEPSPQIEWAVSVVS
Q
A
R
S
W
P
AGERP
R
R
A
G
V
S
S
F
G
I
-
S
------
G
T
N
A
H
V
I
V
E
E
A
P
EADG
P
V
P
L
V
L
S
G
---
R
D
E
Q
A
M
R
A
Q
A
G
R
L
A
D
H
L
A
R
E
PRNS
L
R
D
T
G
F
T
L
A
TR
R
S
A
W
E
H
R
A
V
V
V
G
D
R
D
E
A
L
A
G
L
R
A
V
A
D
G
R
I
A
D
R
T
A
T
G
Q
A
R
TRR
G
V
A
M
V
F
P
G
Q
GAQWQGMA
R
D
L
L
R
E
S
Q
V
F
A
D
S
I
R
D
C
E
R
A
L
A
PHVDWS
L
T
D
L
L
S
G
ARPLDR
V
D
V
V
Q
P
A
L
F
A
V
M
V
S
L
A
A
L
W
R
S
H
GVEPA
A
V
V
G
H
S
Q
G
E
I
A
A
A
H
V
A
GALT
L
E
D
A
A
K
L
V
A
V
R
S
R
V
L
RRLGGQ
G
G
M
A
S
F
GLG
T
E
Q
A
A
E
R
I
GRFAGALSIASVNGPR
S
V
V
V
A
GES
G
P
L
D
E
L
I
A
E
C
E
A
E
AHK
A
R
R
I
PVDYASHSPQVESL
R
E
E
L
L
T
E
LAG
I
S
P
V
SADVALYSTTTGQPIDTATMD
T
A
Y
W
Y
A
N
L
R
EQVR
F
Q
D
A
T
R
Q
L
A
E
A
GFDAFVEVSPHPVL
T
V
G
I
E
A
T
L
D
S
A
LPADA
G
A
C
V
V
G
T
L
RRDRGG
L
A
D
F
H
T
A
L
G
E
A
Y
A
Q
GVEVDWSPAFAD
A
R
P
V
E
L
P
V
Y
PFQ
R
Q
R
Y
W
L
P
I
22
Fugue
59.94
36%
-246
- C10 -
1YZ2
1
CO66_CONAA
A:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CK
Q
A
G
E
S
C
D
I
F
-
S
Q
---
N
C
C
V
G
T
-----------------------
C
A
F
I
C
IE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
57.35
18%
-202
- C7 -
4B0T
4
PAFA_CORGL
A:
[2-477]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STVESALT
R
R
I
M
G
I
E
T
E
Y
G
L
T
F
V
DR
P
D
E
I
A
R
R
M
F
R
P
I
V
E
K
YSSS
N
I
F
I
PNG
S
R
L
Y
L
D
VGSH
P
E
Y
A
T
A
ECDN
L
T
Q
L
I
N
F
E
K
A
G
D
V
I
A
D
R
M
A
V
D
A
E
E
S
L
A
K
E
D
I
A
G
Q
V
Y
L
F
K
N
N
V
D
S
V
G
N
-
S
Y
---
G
C
H
E
N
Y
L
V
G
R
S
M
P
L
-----
K
A
L
G
K
R
L
---
M
P
F
L
I
T
RQLICGA
G
R
I
H
H
P
N
PLDKG
E
S
F
P
LGYCISQR
S
D
H
V
W
E
G
V
S
SATTRSRPIINTRDEPHADSHS
Y
R
R
L
H
V
I
VGDANMA
E
P
S
I
A
L
K
V
G
S
T
L
L
V
L
E
M
I
E
A
DFGLPSLELANDIAS
I
R
E
I
S
R
D
ATGS
T
L
L
S
L
KDG
T
T
M
T
A
L
Q
I
Q
Q
V
V
F
E
H
A
S
K
W
L
E
Q
RPEPEFSGTS
N
T
E
M
A
R
V
L
D
L
W
G
R
M
L
K
A
I
E
S
GDFSEVDTEI
D
W
V
I
K
K
K
L
I
D
R
F
I
Q
R
G
NLGLDD
P
K
L
A
Q
V
D
L
T
Y
HDIRPGRG
L
F
S
V
L
Q
S
R
GMIKRWTT
D
E
A
I
L
A
A
V
D
TAPDTT
R
A
H
L
R
G
R
I
L
K
A
A
D
T
L
G
V
P
V
T
V
D
WM
R
H
K
V
NRP
E
P
Q
S
V
E
L
GDPFSAVN
S
E
V
D
Q
L
I
E
Y
M
T
V
H
A--------------------------------------------------------------------------------------------------
16
Fugue
53.95
28%
-127
- C6 -
2MSF
-
SCKP1_TITSE
A:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KP
K
C
G
L
C
R
Y
R
C
C
S
G
---
G
C
S
S
G
K
C
V
-----------------
N
---
G
A
C
D
C
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
53.44
31%
-501
- C9 -
3S8F
4
COXA_THET8
C:
[9-24]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
I
L
V
-----
L
T
L
T
I
L
V
---
F
W
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
51.04
24%
-165
- C- -
1G39
-
HNF1A_MOUSE
A:
[1-28]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
Q
L
Q
T
E
L
L
-----
A
A
L
L
E
S
G
LS
K
E
A
L
I
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
49.77
21%
13
- C4 -
2K05
-
CXCR4_HUMAN
B:
[101-138]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
G
I
S
I
T
S
D
-
N
T
EEM
G
S
G
D
D
S
-----
M
K
E
-----
P
A
F
R
E
E
N
---
A
N
F
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
49.16
27%
-542
- C9 -
2M59
-
VGFR2_HUMAN
A:
[11-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
T
A
V
I
A
M
F
F
-----
W
L
L
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
48.33
47%
-347
- C9 -
2L16
-
TATAD_BACSU
A:
[9-23]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
L
I
F
V
-----
I
A
L
I
I
F
G
---
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
45.39
33%
-388
- C9 -
2MI2
-
?
A:
[7-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
L
L
V
F
I
-----
I
G
L
V
V
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.38
56%
-
- C2 -
2L6W
-
PGFRB_HUMAN
A:
[19-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
T
I
-----
I
S
L
I
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.20
83%
-
- C3 -
4XTR
-
?
G:
[29-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
-----
I
F
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
45.17
33%
-338
- C9 -
2M7G
-
?
A:
[6-17]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
V
V
A
-----
I
I
G
I
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.03
38%
0
- C- -
3WU2
-
PSBI_THEVL
I:
[13-23]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
T
F
F
-----
V
L
L
F
V
F
G
---
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
38.52
14%
-403
- C9 -
1QLE
4
COX4_PARDE
D:
[28-41]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
L
S
I
A
V
L
-----
V
F
L
A
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
36.69
5%
43
* C9 *
4PVZ
-
HEH2_YEAST
C:
[97-131]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
S
T
N
K
R
K
-
R
E
---
Q
I
S
T
D
N
E
A
K
M
Q
I
Q
E
-----
E
K
S
P
K
K
K
---
R
K
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
36.62
20%
-23
* C10 *
1MVJ
1
A:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CK
L
K
G
Q
S
C
R
K
T
-
S
Y
---
D
C
C
S
G
S
C
------------------
G
---
R
S
G
K
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
35.57
19%
-334
- C9 -
2MN6
-
TATA_ECOLI
B:
[7-22]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
L
L
I
I
A
V
-----
I
V
V
L
L
F
G
---
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.23
29%
-
- C1 -
2MFR
-
A:
[24-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
F
-----
V
F
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.69
13%
-
- C9 -
2MKV
-
ATNG_HUMAN
A:
[28-42]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
F
A
G
L
A
F
-----
I
V
G
L
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------