@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19990: (2016-07-02 )
MFKDKNKIIKSVEKINKLEEGLSLFEEGDEEYLSVLVKIQGLYDEISDTALECFKEMTTKIRKTGQKRIIKGIDQLPHTIKENIADQVNDFKGGAI
Atome Classification :
(20 SA)
--------------------------------------------------------------------------..--.......10...-...---..20---.....--..----..30--------...----.---....40--------......--.-----.-.50-----..---.......60....------....70---..-------------------.....--..80...--..-.-..90.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------MF--K
D
K
N
K
I
I
K
S
V
E
K
-
I
N
K
---
L
E
E
----
G
L
S
L
F
--
E
E----G
D
E
E
--------
Y
L
S
----
V
---
L
V
K
I
Q
---------
G
L
Y
D
E
I
--
S
-----
D
-
T
A
------
L
E
---
C
F
K
E
M
T
T
K
I
R
KT
G
------
Q
K
R
I
I
----
K
G
-------------------
I
D
QL
P
--
H
T
I
K
E
N
I
--
A
D
-
Q
-
V
N
DFKGGAI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
73.62
21%
36
- C4 -
5EQZ
-
?
A:
[20-157]
----------------------------------------------------HHHY
V
E
E
K
K
E
I
D
S
L
M
E
D
V
L
A
LV
N
D
--
S
S
G
G
K
F
K
D
Y
K
D
K
-
I
N
E
---
L
K
E
----
N
L
K
----
D
I
----
G
N
A
E
--------
L
K
E
----
K
---
L
L
N
L
Q
---------
N
S
F
Q
D
K
--
L
-----
A
-
A
K
------
L
A
---
A
L
K
A
A
K
N
T
I
E
N
I
T
DKDQ
D
I
S
K
R
K
I
----
W
S
E
A
K
L
V
G
V
T
V
P
LLGSNTSG
N
G
D
K
M
S
--
K
N
A
V
E
Q
I
--
D
K
-
V
-
I
K
F
L
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
64.61
24%
-136
- C4 -
3WX4
-
ARN_BPT4
A:
[1-98]
--------------------------------------------------------------------------
M
I
--
I
D
S
Q
S
V
V
Q
Y
T
F
K
-
I
D
I
---
L
E
K
----
L
Y
K
F
L
--
P
N
----
L
Y
H
S
--------
I
V
N
----
E
---
L
V
E
-----------
E
L
H
L
E
N
--
N
-----
D
-
F
L
------
I
G
---
T
Y
K
D
----
L
S
K
A
G
------
Y
F
Y
V
I
P
A
PG
K
N
-------------------
I
D
D
V
L
--
K
T
I
M
I
Y
V
--
H
D
Y
E
-
I
E
D
Y
F
E
L
E
H
HHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
61.52
16%
55
- C4 -
2KCL
-
?
A:
[1-99]
-------------------------------------------------------------------------E
D
P
--
E
D
P
F
T
R
Y
A
L
A
Q
E
-
H
L
K
H
DN
A
S
R
----
A
L
A
L
F
--
E
E
----
L
V
E
T
DPD-----
Y
V
G
----
T
---
Y
Y
H
L
G
---------
K
L
Y
E
R
L
DR
T
-----
D
-
D
A
------
I
D
---
T
Y
A
Q
G
I
E
V
A
R
E
E
G
------
T
Q
K
D
L
----
S
E
-------------------
L
Q
D
A
K
--
L
K
A
E
G
L
E
--
H
H
-
H
-
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
60.87
21%
-1
- C4 -
3Q0K
-
PACN2_HUMAN
A:
[181-270]
------------------------------------------------------------------------------
K
C
K
Q
D
V
L
K
T
K
E
K
-------
Y
E
K
----
S
L
K
E
L
--
D
Q
----
G
T
P
Q
--------
Y
M
E
----
N
---
M
E
Q
V
F
---------
E
Q
C
Q
Q
F
--
E
-----
E
-
K
R
------
L
R
---
F
F
R
E
V
L
L
E
V
Q
K
H
L
------
D
L
S
N
V
----
A
G
-------------------
Y
K
A
I
Y
--
H
D
L
E
Q
S
I
R
A
A
D
-
A
-
V
E
D
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
60.21
22%
-172
- C4 -
5EQZ
-
?
A:
[46-104]
--------------------------------------------------------------------------------
G
G
K
F
K
D
Y
K
D
K
-
I
N
E
---
L
K
E
----
N
L
K
D
I
--
G
N
----
A
--
E
--------
L
K
E
----
K
---
L
L
N
L
Q
---------
N
S
F
Q
D
K
--
L
-----
A
-
A
K
------
L
A
---
A
L
K
A
A
K
N
T
I
E
N
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.84
21%
-16
- C4 -
3HAJ
-
PACN2_HUMAN
A:
[196-284]
------------------------------------------------------------------------------
K
C
K
Q
D
V
L
K
T
K
E
K
-------
Y
E
K
----
S
L
K
E
L
--
D
Q
----
G
T
P
Q
--------
Y
M
E
----
N
---
M
E
Q
V
F
---------
E
Q
C
Q
Q
F
--
E
-----
E
-
K
R
------
L
R
---
F
F
R
E
V
L
L
E
V
Q
K
H
L
------
D
L
S
N
V
----
A
G
-------------------
Y
K
A
I
Y
--
H
D
L
E
Q
S
I
R
A
A
D
-
A
-
V
E
D
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.69
18%
75
- C4 -
1P68
-
?
A:
[1-102]
--------------------------------------------------------------------------
M
Y
--
G
K
L
N
D
L
L
E
D
L
Q
E
V
L
K
N
---
L
H
K
N
WHG
G
K
D
N
L
--
H
D
----
V
D
N
H
--------
L
Q
N
----
V
---
I
E
D
I
H
D
F
M
Q
GGGSG
G
K
L
Q
E
M
--
M
-----
K
-
E
F
------
Q
Q
---
V
L
D
E
L
N
N
H
L
Q
--
G
------
G
K
H
T
V
----
H
H
-------------------
I
E
Q
N
I
--
K
E
I
F
H
H
L
--
E
E
-
L
-
V
H
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
56.47
17%
102
- C4 -
4LEU
-
PP266_ARATH
A:
[71-252]
KLIG
K
E
A
L
F
V
I
L
G
L
K
R
L
KED
D
E
K
L
D
K
F
I
K
T
HVFRLL
K
L
D
M
L
A
V
I
G
E
L
E
R
Q
EE
T
A
L
A
I
K
M
F
E
V
I
Q
K
QEWYQPD
V
F
M
Y
--
K
D
---
L
I
V
S
L
A
K
-
S
K
R
---
M
D
E
----
A
M
A
L
W
--
E
K
----
M
K
K
E
N
L
F
P
D
S
Q
T
Y
T
E
----
V
---
I
R
G
F
L
---------
R
--
D
G
C
--
P
-----
A
-
D
A
------
M
N
---
V
Y
E
D
M
L
K
S
P
D
P
P
E
------
E
L
P
F
R
----
V
L
-------------------
L
K
G
L
L
PH
P
L
L
R
N
K
V
--
K
K
-
D
-
F
E
E
L
F
P
E
K
H
AYDPPEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.21
32%
-22
- C- -
4OZS
-
?
A:
[6-66]
---------------------------------------------------------------------------------
N
T
L
I
D
G
L
A
K
-
A
G
R
---
L
E
E
----
A
L
Q
L
F
--
Q
E
----
M
K
E
K
--------
G
V
K
----
P
D--
V
V
T
Y
N
---------
T
L
I
D
G
L
--
A
K
A
GR
L
E
-
E
A
------
L
Q
---
L
F
Q
E
M
K
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
54.29
18%
35
- C4 -
4MT7
-
ARHG9_RAT
A:
[45-381]
---------------------------------Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
R
H
Y
I
K
H
L
K
D
I
C
E
G
Y
L
K
Q
C
R
K
R
RD
M
F
S
D
E
Q
L
K
V
I
F
G
N
I
E
D
-
I
Y
R
---
F
Q
M
----
G
F
V
R
D
--
L
E
K
Q
YN
N
D
D
P
--------
H
L
S
EI
G
P
C
---
F
L
E
H
Q
DGF------
W
I
Y
S
E
Y
--
C
-----
N
-
N
H
------
L
D
---
A
C
M
E
L
S
K
L
M
K
D
S
R
------
Y
Q
H
F
F
----
E
A
-------------------
C
R
L
L
Q
--
Q
M
I
D
I
A
I
--
D
G
-
F
-
L
L
T
P
V
Q
K
I
C
K
Y
P
L
Q
L
A
E
L
L
K
Y
TAQDHSD
Y
R
Y
V
A
A
A
L
A
V
M
R
N
V
T
Q
Q
I
N
E
R
K
RRLEN
I
D
K
I
A
Q
W
Q
A
S
VLDWEGDDILDRSSELI
Y
T
G
E
M
A
W
I
YQPY
G
R
N
Q
Q
R
V
F
F
L
F
DH
Q
M
V
L
C
K
K
DLIRRD
I
L
Y
Y
KGRIDMDK
Y
E
V
I
D
I
E
D
G
RDDDF
N
V
S
M
K
N
A
F
K
L
H
N
KETE
E
V
H
L
F
F
A
KK
L
E
E
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G
17
PsiBlast_PDB
54.18
23%
56
- C4 -
4H32
-
?
B:
[44-122]
---------------------------------------------------------------------------------
N
K
V
N
S
I
I
D
K
-
M
N
-------------
S
Q
F
--
E
S
----
N
I
K
E
--------
F
N
R
----
L
---
E
L
R
I
Q
---------
H
L
S
D
R
V
--
D
-----
D
-
A
L
------
L
D
---
I
W
S
Y
N
T
E
L
L
V
L
L
E
------
N
E
R
T
L
----
D
F
-------------------
H
D
A
N
V
--
K
N
L
F
E
K
V
--
K
A
-
Q
-
L
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
53.30
23%
76
- C4 -
4I78
-
?
C:
[50-128]
---------------------------------------------------------------------------------
N
K
V
N
S
I
I
D
K
-
M
N
-------------
S
Q
F
--
E
S
----
N
I
K
E
--------
F
N
R
----
L
---
E
L
R
I
Q
---------
H
L
S
D
R
V
--
D
-----
D
-
A
L
------
L
D
---
I
W
S
Y
N
T
E
L
L
V
L
L
E
------
N
E
R
T
L
----
D
F
-------------------
H
D
A
N
V
--
K
N
L
F
E
K
V
--
K
A
-
Q
-
L
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
49.02
13%
32
- C4 -
2B1E
-
EXO70_YEAST
A:
[70-171]
-------------------------------------------------------------------------------
S
V
A
S
V
K
D
L
A
N
E
-
A
S
K
---
Y
E
I
----
I
L
Q
K
G
IN
Q
V
----
G
L
K
Q
--------
Y
T
Q
----
V
---
V
H
K
L
D
---------
D
M
L
E
D
I
--
Q
-----
S
---REEN
S
E
F
H
---
G
I
L
T
H
L
E
Q
L
I
K
R
S
------
E
A
Q
L
R
----
V
Y
-------------------
F
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
46.80
36%
-309
- C4 -
2I47
-
ADA17_HUMAN
A:
[245-263]
------------------------------------------------------------------------------------------------------------------------------------------------
Q
---------
S
I
Y
K
T
I
--
E
-----
S
-
K
A
------
Q
E
---
C
F
Q
E
R
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
46.73
28%
-39
- C4 -
2D9D
-
A:
[11-63]
----------------------------------------------------------------------------------
K
I
E
K
V
L
K
R
-
M
R
E
---
I
K
N
----
E
L
L
Q
A
--
Q
N
----
P
S
E
L
--------
Y
L
S
----
S
---
K
T
E
L
Q
---------
G
L
I
G
Q
L
--
D
-----
E
-
V
S
------
L
E
KN
P
C
I
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
45.85
18%
-83
- C4 -
1CTF
1
RL7_ECOLI
A:
[19-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
------
V
A
---
V
I
K
A
V
R
G
A
-
T
G
L
G
------
L
K
E
A
K
----
D
L
-------------------
V
E
S
A
P
--
A
A
L
K
E
G
V
S-
K
D
-
D
-
A
E
A
L
K
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
45.32
42%
-134
- C4 -
3V5Y
1
FBXL5_HUMAN
A:
[68-95]
--------------------------------------------------------------------------
L
L
--
Q
Q
R
S
Q
T
I
Y
N
V
H
---
N
K
---
L
S
E
----
M
L
S
L
F
--
E
K
----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
44.01
22%
-138
- C4 -
4XK8
-
PSAF_SPIOL
F:
[98-138]
-------------------------------------------------------------------------------------------
L
K
K
---
L
Q
A
----
S
L
K
L
Y
--
A
D
----
D
S
A
P
--------
A
L
A
----
I
K
A
T
M
E
K
T
K
---------
K
R
F
D
N
Y
--
G
-----
K
Y
G
L
------
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
42.99
21%
-
- C4 -
2FTC
-
RM12_BOVIN
E:
[66-124]
------------------------------------------------------------------------------------------------------------------------------------------------
R
---------
T
H
F
T
V
R
--
L
-----
T
-
E
A
KPVDK-
V
K
---
L
I
K
E
I
K
N
Y
V
Q
G
I
N
------
L
V
Q
A
K
----
K
L
-------------------
V
E
S
L
P
--
Q
E
I
K
A
N
V
--
A
K
-
A
E
A
E
K
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.45
42%
-11
- C4 -
3V5Z
1
FBXL5_HUMAN
A:
[68-95]
--------------------------------------------------------------------------
L
L
--
Q
Q
R
S
Q
T
I
Y
N
V
H
---
N
K
---
L
S
E
----
M
L
S
L
F
--
E
K
----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------