@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20290: (2016-07-02 )
MFKKGQKVIVDFTDEIGAVAKVDYRYNQIEVKYPDGTYQVVGFHKVRKVED
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----.----------------------..---.------....20...-..--..--.30....-.-..-----.-40........50-----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFKKG
Q
K
V
I
V
D
-----F----------------------TD---E------IG
A
V
A
K
V
D
Y
-
R
Y
--
N
Q
--
I
E
V
KYPD-G-
T
Y
-----
Q
-
V
V
G
F
H
K
V
RKVED-----------------------------------------------------------------------------------------------------------------
19
HHSearch
100.00
32%
0
- C- -
4TSE
-
MIB1_HUMAN
A:
[246-318]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
I
G
D
L
V
N
I
D
-----
L
D
L
E
I
V
Q
S
L
Q
HGHGGWTDGM
F
E
T
L
T
---
T
------
T
G
T
V
C
G
I
D
E
-
D
H
---
D
--
I
V
V
Q
Y
P
S
-
G
---------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
66.40
26%
33
- C1 -
4HCZ
1
PHF1_HUMAN
A:
[4-53]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
E
G
Q
D
V
L
A
R
-----
W
----------------------
T
D
---
G
L
L
Y
---
L
G
T
I
K
K
V
D
S
-
A
R
--
E
V
--
C
L
V
Q
F
E
D
-
D
-
S
Q
-----
F
-
L
V
L
W
K
D
I
S
P
--------------------------------------------------------------------------------------------------------------------
16
HHSearch
64.18
19%
-15
- C1 -
2EQJ
-
MTF2_MOUSE
A:
[14-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
E
G
Q
D
V
L
A
R
-----
W
----------------------
S
D
---
G
L
F
Y
---
L
G
T
I
K
K
I
N
I
-
L
K
--
Q
S
--
C
F
I
I
F
E
D
-
S
-
S
K
-----
S
-
W
V
L
W
K
D
I
Q
T
G
-------------------------------------------------------------------------------------------------------------------
14
HHSearch
63.47
26%
-33
- C1 -
3QII
1
A:
[22-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
I
N
E
Q
V
L
A
C
-----
W
----------------------
S
D
---
C
R
F
Y
---
P
A
K
V
T
A
V
N
K
-
D
---
G
T
--
Y
T
V
K
F
Y
D
-
G
-
V
V
-----
Q
-
T
V
K
H
I
H
V
K
A
F
-------------------------------------------------------------------------------------------------------------------
9
HHSearch
63.12
21%
24
- C1 -
2E5Q
-
PHF19_HUMAN
A:
[8-57]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
G
Q
Y
V
L
C
R
-----
W
----------------------
T
D
---
G
L
Y
Y
---
L
G
K
I
K
R
V
S
S
-
S
K
--
Q
S
--
C
L
V
T
F
E
D
-
N
-
S
K
-----
Y
-
W
V
L
W
K
D
I
Q
H
--------------------------------------------------------------------------------------------------------------------
18
HHSearch
62.32
26%
47
- C1 -
2E5P
-
PHF1_HUMAN
A:
[10-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
E
G
Q
D
V
L
A
R
-----
W
----------------------
T
D
---
G
L
L
Y
---
L
G
T
I
K
K
V
D
S
-
A
R
--
E
V
--
C
L
V
Q
F
E
D
-
D
-
S
Q
-----
F
-
L
V
L
W
K
D
I
S
P
--------------------------------------------------------------------------------------------------------------------
6
HHSearch
61.03
26%
-30
- C- -
3P8D
-
PHF20_HUMAN
A:
[87-136]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
I
N
E
Q
V
L
A
C
-----
W
----------------------
S
D
---
C
R
F
Y
---
P
A
K
V
T
A
V
N
K
-
D
---
G
T
--
Y
T
V
K
F
Y
D
-
G
-
V
V
-----
Q
-
T
V
K
H
I
H
V
K
A
F
-------------------------------------------------------------------------------------------------------------------
8
HHSearch
60.76
20%
39
- C1 -
2XK0
-
A:
[22-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
L
Q
E
D
V
F
I
K
-----
C
----------------------
N
D
---
G
R
F
Y
---
L
G
T
I
I
D
--
Q
-
T
S
--
D
Q
--
Y
L
I
R
F
D
D
-
Q
-
S
E
-----
Q
-
W
C
E
P
D
K
L
R
K
L
-------------------------------------------------------------------------------------------------------------------
34
Fugue
58.18
21%
-7
- C1 -
2EQU
-
P20L1_HUMAN
A:
[78-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSS
G
F
D
F
K
A
G
E
E
V
L
A
R
-----
W
----------------------
T
D
---
C
------
R
Y
Y
P
A
K
I
E
A
-
I
N
KE
G
T
--
F
T
V
Q
F
Y
D
-
G
-
V
I
-----
R
-
C
L
K
R
M
H
I
K
A
M
P
E
DAKGQDWIALVKA----------------------------------------------------------------------------------------------------
25
Fugue
57.44
25%
34
- C1 -
1QP2
-
PSAE_NOSS8
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
Q
R
G
S
K
V
R
I
L
RPESY
W
----------------------
F
Q
---
D
------
V
G
T
V
A
S
V
D
Q
-
S
G
--
I
K
YP
V
I
V
R
F
E
K
-
V
-
N
Y
SGIN
T
N
-
N
F
A
E
D
E
L
V
E
V
E
A
PKAKPKK----------------------------------------------------------------------------------------------------------
27
Fugue
56.78
23%
-106
- C1 -
2O4X
-
SND1_HUMAN
A:
[654-870]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
A
S
Y
K
P
V
F
V
T
E
ITDDL
H
F
Y
V
Q
D
VET
G
T
Q
F
E
K
L
M
E
N
M
R
N
D
I
A
S
H
PPVEGS
Y
A
P
R
R
G
E
F
C
I
A
K
-----
F
----------------------
V
D
---
G
------
E
W
Y
R
A
R
V
E
K
-
V
E
SP
A
K
--
I
H
V
F
Y
I
D
Y
G
-
N
R
-----
E
-
V
L
P
S
T
R
L
G
T
L
S
P
AFSTRVLPAQ
A
T
E
Y
A
F
A
FIQVPQD
D
D
A
R
T
D
A
V
D
S
V
V
R
D
IQN
T
Q
C
L
L
N
V
EHLSAG
C
P
H
V
T
L
Q
F
A
DSKGD
V
G
L
G
L
V
K
E
GLVMVEVRKEKQF
Q
K
V
I
T
E
Y
L
N
A
Q
E
S
A
K
S
A
RLNLWRY
26
Fugue
56.78
23%
-106
* C1 *
2HQE
-
SND1_HUMAN
A:
[654-870]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
A
S
Y
K
P
V
F
V
T
E
ITDDL
H
F
Y
V
Q
D
VET
G
T
Q
F
Q
K
L
M
E
N
M
R
N
D
I
A
S
H
PPVEGS
Y
A
P
R
R
G
E
F
C
I
A
K
-----
F
----------------------
V
D
---
G
------
E
W
Y
R
A
R
V
E
K
-
V
E
SP
A
K
--
I
H
V
F
Y
I
D
Y
G
-
N
R
-----
E
-
V
L
P
S
T
R
L
G
T
L
S
P
AFSTRVLPAQ
A
T
E
Y
A
F
A
FIQVPQD
D
D
A
R
T
D
A
V
D
S
V
V
R
D
IQN
T
Q
C
L
L
N
V
EHLSAG
C
P
H
V
T
L
Q
F
A
DSKGD
V
G
L
G
L
V
K
E
GLVMVEVRKEKQF
Q
K
V
I
T
E
Y
L
N
A
Q
E
S
A
K
S
A
RLNLWRY
29
Fugue
56.61
23%
26
- C1 -
3BDL
4
?
A:
[21-567]
MDK
Q
F
V
A
K
V
MQVLNAD
A
I
V
V
K
L
NSG
D
Y
K
T
I
H
L
S
SIRPPRLEGENTQDKNKKLRPLYDIPY
M
F
E
A
R
E
F
L
R
K
K
LIG
K
K
V
N
V
T
V
DYIRPASPATETVPA
F
S
E
R
T
C
A
T
V
T
I
GGIN
I
A
E
A
L
V
S
K
GL
A
T
V
I
R
Y
RQDDDQRSSH
Y
D
E
L
L
A
A
E
A
R
A
I
K
N
GKGLHSKKE
V
P
I
H
R
V
A
D
ISGD
T
Q
K
A
K
Q
F
L
P
F
L
Q
R
A
G
R
S
E
A
V
V
EYVFSGS
R
L
K
L
Y
L
PKET
C
L
I
T
F
L
L
A
GIE
C
P
R
G
A
R
NLPG
L
V
Q
E
G
E
PF
S
E
E
A
T
L
F
T
K
E
L
VLQ
R
E
V
E
V
E
V
ESMDKAG
N
F
I
G
W
L
H
I
DGAN
L
S
V
L
L
V
E
H
AL
S
K
V
H
FTAERSSY
Y
K
S
L
L
S
A
E
E
A
A
K
Q
K
KEKVWAMPVLEEKERSA
S
Y
K
P
V
F
V
T
E
ITDDL
H
F
Y
V
Q
DVET
G
T
Q
L
E
K
L
M
E
N
M
R
N
D
I
A
S
H
PPVEGS
Y
A
P
R
R
G
E
F
C
I
A
K
-----
F
----------------------
V
D
---
G
------
E
W
Y
R
A
R
V
E
K
-
V
E
SP
A
K
--
I
H
V
F
Y
I
D
Y
G
-
N
R
-----
E
-
V
L
P
S
T
R
L
G
T
L
S
P
AFSTRVLPAQ
A
T
E
Y
A
F
A
FIQVPQD
D
D
A
R
T
D
A
V
D
S
V
V
R
D
IQN
T
Q
C
L
L
N
V
EHLSAG
C
P
H
V
T
L
Q
F
ADSKGD
V
G
L
G
L
V
K
E
GL
V
M
V
E
V
R
KEKQF
Q
K
V
I
T
E
Y
L
N
A
Q
E
S
A----------
13
HHSearch
56.16
26%
0
- C- -
2LDM
-
PHF20_HUMAN
A:
[87-350]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
I
N
E
Q
V
L
A
S
-----
W
----------------------
S
D
---
S
R
F
Y
---
P
A
K
V
T
A
V
N
K
-
D
---
G
T
--
Y
T
V
K
F
Y
D
-
G
-
V
V
-----
Q
-
T
V
K
H
I
H
V
K
A
F
-------------------------------------------------------------------------------------------------------------------
5
HHSearch
55.37
21%
32
- C1 -
2D9T
-
A:
[10-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
P
G
D
E
C
F
A
L
-----
Y
----------------------
W
E
---
D
N
K
F
Y
--
R
A
E
V
E
A
L
H
S
-
S
G
--
M
T
--
A
V
V
K
F
T
D
Y
G
-
N
Y
-----
E
-
E
V
L
L
S
N
I
K
P
V
-------------------------------------------------------------------------------------------------------------------
31
Fugue
54.52
15%
79
- C1 -
2XK0
-
A:
[7-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAMAPPVAA
P
S
P
A
V
T
Y
A
L
Q
E
D
V
F
I
K
-----
C
----------------------
N
D
---
G
------
R
F
Y
L
G
T
I
I
D
Q
T
S
--
D
Q
--
Y
L
I
R
F
D
D
-
Q
-
S
E
-----
Q
-
W
C
E
P
D
K
L
R
K
L
G
G
GSS--------------------------------------------------------------------------------------------------------------
32
Fugue
52.56
23%
35
- C1 -
2HQX
-
SND1_HUMAN
A:
[8-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
Q
F
Q
K
L
M
E
N
M
R
N
D
I
A
S
H
PPVEGS
Y
A
P
R
R
G
E
F
C
I
A
K
-----
F
----------------------
V
D
---
G
------
E
W
Y
R
A
R
V
E
K
-
V
E
SP
A
K
--
I
H
V
F
Y
I
D
Y
G
-
N
R
-----
E
-
V
L
P
S
T
R
L
G
T
L
S
P
AFSTRVLPAQA------------------------------------------------------------------------------------------------------
24
HHSearch
50.71
15%
16
- C1 -
2EQU
-
P20L1_HUMAN
A:
[87-136]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
A
G
E
E
V
L
A
R
-----
W
----------------------
T
D
---
C
R
Y
Y
---
P
A
K
I
E
A
I
N
K
-
E
---
G
T
--
F
T
V
Q
F
-
Y
-
D
G
V
I
-----
R
-
C
L
K
R
M
H
I
K
A
M
-------------------------------------------------------------------------------------------------------------------
28
Fugue
50.32
19%
-9
- C1 -
2E5Q
-
PHF19_HUMAN
A:
[1-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSS
G
S
S
G
L
T
E
G
Q
Y
V
L
C
R
-----
W
----------------------
T
D
G
L
Y
Y
------
L
G
K
I
K
R
V
S
S
-
S
K
--
Q
S
--
C
L
V
T
F
E
D
-
N
-
S
K
-----
Y
-
W
V
L
W
K
D
I
Q
H
A
G
V
PGE--------------------------------------------------------------------------------------------------------------
22
HHSearch
50.21
20%
44
- C1 -
3H8Z
-
FXR2_HUMAN
A:
[69-125]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
T
E
G
D
E
V
E
V
Y
-----
S
----------------------
R
A
----E
P
C
G
W
W
L
A
R
V
R
M
M
K
G
-----
D
F
--
Y
V
I
E
Y
A
A
-
C
--------
N
E
I
V
T
L
E
R
L
R
P
--------------------------------------------------------------------------------------------------------------------