@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu21200: (2016-07-03 )
MSMTVEQMTKVFRLVMDDVELNRLLYYKTDPLSPSHPDVQSLENYYDSTNDSPAIINTIFKRAPKTDDLSDSPLCRMCIYLGNALPKPTNQSFMLLNQELMIDVYTHINTFEISEYRSLKIIDRVSKLFFNKNIAGFGVTVDYKRLLISNPPDGYLGYKMIFTFGASK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------..-.......10......--..---20....-..---...30-.-...-....------.40-.......----.-50........60...--.....--70........80........90-.......--.100.......110....---------...120.......-.130.----.....-.140.......150.......160......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------MS-M
T
V
E
Q
M
T
K
V
F
R
L
V
M
D
--
D
V---E-L
N
R
L
-
L
Y
---
Y
KTD--P-LSP-SHP
D
------
V
Q
S
-
L
E
N
Y
YDS----T-NDS
P
A
I
I
N
T
I
F
KRAP--KTDDL--SD
S
P
L
C
R
M
C
I
Y
L
GNALPKPTNQ-S
F
M
L
L
N
Q
--
E
L
M
I
D
V
Y
THI
N
T
F
E
ISEY---------R
S
L
K
-
I
I
D
R
V
S
K
L
-
F
FNKN----IAG
F
G
-
V
T
V
D
Y
K
R
L
LISNPPDGYL
G
Y
K
M
I
F
T
FGASK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
63.85
23%
2
- C7 -
1UXG
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
P
R
K
P
GM
S
R
E
D
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
63.67
23%
2
- C7 -
1UXH
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
P
R
K
P
GM
S
R
E
D
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
63.42
23%
6
- C7 -
1UXI
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
P
R
K
P
GM
S
R
E
D
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
63.06
23%
-5
- C7 -
1UR5
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
--------
E
D
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
61.92
23%
6
- C7 -
4CL3
5
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
P
R
K
P
GM
S
R
E
D
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
61.87
23%
-5
- C7 -
1UXK
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
-----------I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
61.22
13%
-63
* C8 *
1Y2Q
-
SYT_PYRAB
A:
[1-143]
--------------------------------------------------------------------------------------------------------------------
M
R
-
V
L
L
I
H
S
D
Y
I
E
Y
E
V
K
D
--
K
A
---------------
L
K
N
P
--
E
-
P
I
S
-
E
D
M
K
------
R
G
R
-
M
E
E
----------------
V
L
V
A
F
I
S
V
E
--
K
V
D
E
K
--
N
P
E
E
V
S
L
K
A
I
E
E
I
S
K
V
A
E
Q
V
K
-------
A
E
--
N
V
F
V
Y
P
F
A
H
L
S
S
E
L
A
K
P
S
---------
V
A
M
D
-
I
L
N
R
V
Y
Q
G
-
L
K
E
R
G
FN
V
G
K
A
P
F
G
-
Y
Y
K
A
F
K
I
S
C
K
G
H
P
L
A
-----
E
L
S
R
T
I
V
P
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
59.78
23%
-9
- C7 -
1UXJ
2
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
P
---------
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
58.19
14%
-47
- C8 -
4HVM
2
?
A:
[12-467]
-----------------------------------------------------------------------------------G
L
R
R
A
S
F
L
Q
R
G
A
W
R
W
LREAPPAAA
F
A
A
R
G
L
L
G
S
G
R
-
I
D
D
D
R
L
A
A
A
A
D
E
V
L
D
--
A
F
---
P
-
L
L
R
V
-
N
F
---
V
D
D
D
G
L
W
M
R
T
R
-
E
N
A
D
------
A
L
V
-
R
S
D
L
R
G
H
----
P
-
D
P
Q
A
R
C
V
E
L
L
R
A
D
R
D
--
R
P
T
D
P
--
E
R
D
P
L
V
R
L
H
L
V
R
--------------
L
S
E
T
--
D
V
V
L
G
V
V
A
H
---------------------
Q
M
L
L
D
A
R
S
R
Y
M
V
L
G
A
V
----
W
Q
A
Y
------
Y
G
R
F
R
----
P
A
Q
Y
R
D
F
A
E
V
A
D
F
H
P
L
D
R
E
T
V
R
V
A
R
H
R
W
W
S
R
R
L
PALPVRG
P
P
E
T
S
R
L
R
V
P
G
S
R
W
Q
A
L
T
EPN
G
S
L
A
M
A
A
L
T
A
W
W
L
W
T
QD
S
L
Y
L
S
T
E
V
D
L
R
D
H
L
QLGSVVGPL
T
D
R
V
V
F
G
V
D
LTGLREPS
F
R
D
L
M
S
R
T
Q
A
G
F
L
D
A
V
V
H
YLP
Y
H
D
V
V
D
L
A
V
D
L
GVVTPPRVAARWD
V
A
V
H
LV
S
I
E
L
F
READLIGDTWDGTDTWDGTT
T
D
L
S
V
G
E
L
GE
D
M
V
I
V
L
D
Q
R
RS
A
L
L
D
G
L
D
A
A
M
A
Q
A
V
A
DPSAPLPH
9
PsiBlast_PDB
54.99
23%
-4
- C7 -
1GUY
1
MDH_CHLAA
A:
[47-147]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
A
S
--
P
-
I
E
G
-
F
D
V
R
------
V
T
G
-
T
N
N
Y
A
D
T
----
A
-
N
S
D
V
I
V
V
T
S
G
A
----------
L
I
K
V
N
A
D
I
T
R
A
C
I
S
--
Q
A
A
P
L
S
P
N
A
-
V
I
I
M
V
N
N
--
P
L
--
D
A
M
T
Y
L
A
A
-
E
V
S
G
F
---------
P
K
E
R
-
V
I
G
Q
A
G
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
54.57
12%
6
- C8 -
2GYQ
13
?
A:
[3-171]
-----------------------------------------------------------------------------------------------------------------MGF
F
S
-
R
D
I
Q
T
M
E
D
L
L
L
H
G
L
R
--
D
I
Y
Y
A
E
-
Q
Q
I
T
-
K
A
---
L
P
K
M
--
I
-
E
Q
A
-
T
N
R
D
------
L
S
Q
G
L
T
S
H
L
E
E
----
T
-
Q
K
Q
I
E
R
L
D
Q
V
F
K
K
L
G
--
Q
K
P
S
G
--
V
N
C
P
A
I
D
G
L
I
K
E
A
D
E
T
A
G
E
I
A
D
---
K
T
V
L
D
--
A
A
I
V
A
N
A
Q
A
V
E
H
Y
E
I
A
R
Y
---------
G
T
L
I
-
A
W
A
E
E
L
G
------------------
H
D
D
I
V
R
F
L
T
T
N
L
N
E
E
K
A
A
N
T
K
L
N
T
V
A
L
R
A
S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
48.30
17%
49
* C9 *
3SOY
3
?
A:
[4-145]
----------------------------------------------------------------------------------------------------------------A
T
S
T
V
K
-
Q
E
I
T
E
G
I
N
R
Y
L
Y
S
I
D
K
A
D
P
---
T
-
L
G
K
Q
-
L
F
---
Y
V
S
P
--
E
-
T
S
F
-
I
H
P
R
G
H
E
R
G
W
S
Q
I
-
A
E
N
F
Y
G
T
----
T
M
G
K
T
F
S
K
R
T
L
K
L
D
A
P
P
--------------------------------
A
I
H
V
Y
G
N
--
A
A
V
A
E
F
D
W
H
F
T
A
V
R
R
D
N
G
---------
Q
T
Q
H
-
T
T
G
R
E
S
Q
V
-
W
A
K
I
P
----
N
T
G
W
R
I
V
H
V
H
Y
S
G
P
A
K
T
G
V
G
E
G
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
47.26
19%
-7
- C5 -
4OO3
-
?
A:
[27-465]
EGFTGAPGE
V
K
L
I
T
L
DPGH
F
H
A
A
L
V
Q
KVSYPQVSK
D
V
Y
V
Y
A
P
T
G
F
D
V
D
E
H
L
K
R
I
Q
G
F
N
T
RAEN
P
T
A
W
N
E
I
V
Y
T
G
DD
Y
L
E
K
M
L
A
E
KKGN
V
M
I
Q
A
G
NNGK
K
T
E
Y
I
K
K
T
L
E
A
G
I
N
V
L
S
D
K
P
M
A
I
N
S
Q
S
F
K
L
L
E
E
C
F
A
--
I
A
---
K
-
Q
K
N
I
M
L
Y
D
I
M
T
E
R
N
--
E
-
I
T
T
M
L
Q
R
E
------
L
S
T
-
I
P
A
V
Y
G
E
QLKG
S
-
P
E
E
P
A
I
V
K
E
S
V
H
H
L
F
--
K
L
V
D
---------------
N
K
P
L
T
R
P
--
V
-
W
Y
L
D
V
N
Q
QG
E
G
I
V
D
V
T
T
H
L
V
D
L
V
Q
W
E
A
---------
F
P
D
Q
-
I
I
D
-------
Y
R
K
D
----
I
E
L
I
D
-
A
N
R
W
T
T
S
I
-------
S
P
E
E
F
K
Q
V
T
G
T
D
A
Y
P
DFLKKDVEND
T
L
K
V
YC
N
G
D
I
V
Y
K
I
KG
V
T
A
K
V
S
V
I
W
N
YTFPKGG
G
D
T
H
F
S
V
M
K
G
SK
A
D
L
V
I
R
Q
G
KEQNY
Q
P
E
L
F
V
E
A
V
K
GVD
L
A
A
Y
E
K
D
L
T
A
S
M
E
K
V
S
A
E
YPG
V
A
L
N
K
VGDG
V
W
Q
V
E
I
P
AKYRVG
H
E
A
H
F
G
Q
V
T
E
H
F
L
D
Y
L
K
E
GKLPDW
E
V
P
N
M
L
A
K
Y
Y
T
T
T
S
A
L
D
M
A
K
A
K
T--------------------------------------------------
29
HHSearch
47.04
36%
-153
- C7 -
1N81
-
?
A:
[150-163]
---------------------------------------------------------------------------------------------------------------------------------
K
R
I
M
N
--
D
K
---
K
-
L
I
R
M
-
L
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
42.78
17%
26
- C9 -
1DWN
-
?
A:
[1-127]
-----------------------------------------------------------------------------------------------------------------S
K
T
I
V
-
L
S
V
G
E
A
T
R
T
L
T
E
I
Q
S
--
T
A
---
D
--
R
Q
I
-
F
E
---
E
K
V
G
--
P
-
L
V
G
-
R
L
R
L
------
T
A
S
-
L
R
Q
---
N
----
G
-
A
K
T
A
Y
R
V
N
L
K
L
D
Q
A
D
--
V
V
D
----
C
S
T
S
V
C
G
-------------------------
E
L
P
K
V
R
Y
T
Q
V
W
S
H
D
V
T
I
V
---------
A
N
S
T
-
E
A
S
R
K
S
L
Y
-
D
L
T
K
S
----
L
V
----
A
T
S
Q
V
E
D
L
V
V
N
L
V
P
L
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.08
25%
-3
- C7 -
4ADM
1
FUMC_MYCTU
A:
[351-428]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
E
A
V
T
Q
V
A
A
Q
V
I
G
N
--
D
A
A
I
A
W
G
G
A
N
G
A
F
E
L
N
V
Y
I
P
M
M
A
R
N
I
L
E
S
F
K
-
L
L
T
N
V
S
R
L
-
F
A
Q
R
C
----
I
A
G
L
T
-
A
N
V
E
H
L
R
R
L
A
E
S
S
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.99
25%
3
- C7 -
4APA
-
FUMC_MYCTU
A:
[329-410]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
E
A
V
T
Q
V
A
A
Q
V
I
G
N
--
D
A
A
I
A
W
G
G
A
N
G
A
F
E
L
N
V
Y
I
P
M
M
A
R
N
I
L
E
S
F
K
-
L
L
T
N
V
S
R
L
-
F
A
Q
R
C
----
I
A
G
L
T
-
A
N
V
E
H
L
R
R
L
A
E
S
S
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.66
25%
-6
- C7 -
3NO9
-
FUMC_MYCTU
A:
[329-407]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
E
A
V
T
Q
V
A
A
Q
V
I
G
N
--
D
A
A
I
A
W
G
G
A
N
G
A
F
E
L
N
V
Y
I
P
M
M
A
R
N
I
L
E
S
F
K
-
L
L
T
N
V
S
R
L
-
F
A
Q
R
C
----
I
A
G
L
T
-
A
N
V
E
H
L
R
R
L
A
E
S
S
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
40.65
25%
-1
- C7 -
4APB
-
FUMC_MYCTU
A:
[329-406]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
E
A
V
T
Q
V
A
A
Q
V
I
G
N
--
D
A
A
I
A
W
G
G
A
N
G
A
F
E
L
N
V
Y
I
P
M
M
A
R
N
I
L
E
S
F
K
-
L
L
T
N
V
S
R
L
-
F
A
Q
R
C
----
I
A
G
L
T
-
A
N
V
E
H
L
R
R
L
A
E
S
S
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
40.13
33%
27
- C7 -
3EE6
1
TPP1_HUMAN
B:
[45-117]
--------------------------------------------------------------------------------------------------------------------------
E
E
L
S
L
T
F
A
L
R
Q
Q
--
N
V
---
E
R
L
S
E
L
-
V
Q
---
A
V
S
D
--
P
-
S
S
P
-
Q
Y
G
K
------
Y
L
T
-
L
E
N
V
A
D
L
----
V
-
R
P
S
P
L
T
L
H
T
V
Q
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------