@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu21210: (2016-07-03 )
MNELKDFFFLGKPIQTEIGEIDFIRLKDYPLYTKELSMLRMNKKSLIKEYSRFNEDGSLDPFIIEMKKRDLYEIVHSVLPDFHEAYFKVFSKVLINKDSLSLIGKHNFPRLRKLILDMHCITEDKVVDNDELQEFHDISKSLKQQDSQSDLKDIVSCVAAFNGYTYEEISEMTMYQLYLSFYRMAEVMNYNTTTLFATVSPDVKVSDWSSHINLYKEESYHLSTKDAKNIEQLFGG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------.......----..10-----------....--------.-----...20..--------...----------------...30...------.....40........50-..---------.......--60.-.....--..70.--------.......-80........---90---------........100------.--........110..----.....-----120----------.--..------...-------.130--------------------........140..-----------.-------....150.---......160--....----.....170......---.180--.......------..190.......200.-..--...---..210.......220........230--......--------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------MN
E
L
K
D
F
----
F
FLG-----------KPIQ--------T-----EIG
E
I
D
F
--------
I
R
L----------------KDYP
L
Y
T
K
------
E
L
S
M
L
RM
N
K
K
S
L
I
K
E
Y
--
S
R---------FNEDGSL--DP
F
-
I
I
E
M
K
--
K
R
D
L
Y
--------
E
I
V
H
S
V
L
-
P
D
F
H
E
A
Y
F
K
V
---
F
S
---------
K
V
L
INK
D
S
L
--------
S
--
L
IGKH
N
F
P
R
L
R
K
L
----
I
L
D
MH-----CIT----------E--DK------VV
D
-------
N
D
E
---------------------
L
Q
E
F
H
D
I
S
K
S
L
K
Q-----------Q-------D
S
Q
S
D
L
K
D
---
I
V
S
C
V
A
A
----FNGY----
T
Y
E
E
I
S
E
M
T
M
Y
Q
L
Y
---
L
S
----
F
Y
R
M
A
E
V
------MNYNT
T
T
L
F
A
TVS-PD-
V
K
--VS
D
---
W
S
S
H
I
N
L
Y
KEE
S
Y
-HLSTK
D
A
K
N
I
----
E
Q
L
FGG--------------------------
17
Fugue
73.38
23%
-29
- C3 -
4ART
4
Y273_ATV
A:
[22-270]
-------------------------------------------------------------------------------------------------
I
D
A
T
N
D
E
----
E
K
L
A
-----------
D
I
V
E
--------
N
-----
E
I
-
E
K
E
I
--------
R
K
I
----------------
E
N
F
-----------
Y
Y
Y
I
L
R
D
G
K
I
Y
P
A
S
D
Y
--
D
I
---------
E
V
E
K
G
K
R
--
S
----------
A
N
D
I
Y
--------
A
F
V
E
T
D
V
T
R
D
F
D
E
F
L
F
D
I
---
D
Y
GLPS
I
S
D
I
L
K
F
Y
L
E
K
A
G
F
--------
R
--
I
A
N
E
V
P
T
P
N
L
K
-------
Y
Y
I
H
-----
A
V
V
----------
E
--
F
P
Q
Y
L
A
V
N
I
Y
D
-------
I
D
S
---------------------
L
A
R
A
L
R
I
P
Q
I
V
E
Q
-----------
K
LGNKPRT
I
T
A
D
E
F
N
D
---
I
E
R
I
V
A
E
EQPI
L
A
G
Y
----
T
Y
D
E
A
L
R
I
P
Y
H
Y
Y
V
DHN
N
S
----
F
K
D
D
A
L
K
------
I
A
H
A
Y
L
Q
L
F
P
T
------------------
P
Y
Q
V
C
Y
E
W
K
A
R
-
W
F
N
K
I
D
C
L
K
L
----
E
R
L
K
----------------------------
19
Fugue
55.46
17%
-25
- C3 -
4WD8
4
?
A:
[25-292]
----------------------------------------------------------------------------------------------SK
I
I
F
R
L
L
L
N
----
V
L
M
S
-----------
I
I
A
I
--------
I
-----
S
Y
Q
W
Y
E
Q
LG------
I
H
L
----------------
T
V
A
P
F
S
L
L
------
G
I
A
I
A
I
F
L
G
F
R
N
S
A
S
Y
--
S
R
---------
F
V
E
A
R
N
L
--
W
G
T
-
V
L
I
A
E
---
R
T
L
V
--------
R
Q
L
R
N
I
L
-
P
A
E
H
D
A
H
R
R
I
---
V
S
---------
Y
L
V
A
F
S
W
S
L
--------
K
H
Q
L
R
K
T
D
P
T
A
D
L
R
R
L
-----
L
P
E
E
-----
R
V
T
----------
E
--
I
L
------
A
S
S
-------
M
P
T
---------------------
N
R
I
L
L
L
A
G
N
E
I
G
Q
-----------
L
-------
R
E
A
G
K
L
S
D
---
I
T
Y
G
L
M
D
----
N
K
L
D
----
E
L
A
H
V
L
G
G
C
E
R
L
A
T
---
T
P
----
V
P
F
A
Y
T
L
------
I
L
Q
R
T
V
Y
L
F
C
T
L
L
-
P
F
-
A
L
--
V
G
D
LHY
M
T
P
F
V
S
V
F
I
S
Y
T
F
-
L
S
W
D
S
L
A
E
E
L
----
E
D
P
F
G
T
AANDLP
L
N
A
M
C
N
T
I
E
R
N
L
L
D
M
T
GQ--
18
Fugue
50.34
12%
21
* C5 *
3DNF
2
ISPH_AQUAE
A:
[1-281]
-------------------------------------------------------------------------------------------------
M
V
D
I
I
I
A
EHAG
F
C
F
G
-----------
V
K
R
A
--------
V
-----
K
L
A
E
E
S
---------
L
K
E
----------------
S
Q
G
K
V
Y
T
L
GPIIHN
P
Q
E
V
N
R
L
K
N
L
G
V
F
P
S
Q
--
G
E
EFKEG
D
T
V
I
I
R
S
H
G
I
P
--
P
E
K
-
E
E
A
L
R
--
K
K
G
L
----------
K
V
I
D
A
T
-
C
P
Y
V
K
A
V
H
E
A
---
V
C
---------
Q
L
T
R
E
G
Y
F
V
--------
V
--
L
V
G
E
K
N
H
P
E
V
I
G
T
----
L
G
Y
L
R
A
C
N
G
K
G
I
V
----------
V
--
E
T
------
L
E
D
-------
I
G
E
---------------------
A
L
K
H
E
R
V
G
I
V
A
Q
T
-----------
T
-------
Q
N
E
E
F
F
K
E
---
V
V
G
E
I
A
L
----
W
--
V
----
K
E
V
K
V
I
N
T
I
C
N
A
T
S
---
L
R
----
Q
E
S
V
K
K
L
------
A
P
E
V
D
V
M
I
I
I
G
G
K
-
N
S
-
G
N
--
T
R
R
---
L
Y
Y
I
S
K
E
L
N
P
N
T
Y
-
H
I
E
T
A
E
E
L
Q
P
----
E
W
F
R
G
V
K
R
V
G
I
S
A
G
ASTP
D
W
I
I
E
Q
V
K
S
R
I
Q
E
I
26
Fugue
47.50
11%
30
- C2 -
3H4X
27
?
A:
[25-339]
-------------------------------------------------------------------------------------------------
A
T
T
Y
G
T
S
----
T
S
V
G
V
H
NAYEKEKYR
Y
F
A
D
--------
A
L
D
SGA
A
L
L
E
L
D
L
W
SNALGR
S
W
R
V
S
HSNPLGNNSNCEGAA
N
A
S
E
L
R
T
K
------
S
R
D
Q
D
F
A
G
C
L
S
D
M
R
A
W
--
H
D
---------
A
H
P
--
G
H
--
R
P
I
-
L
L
K
I
E
M-
K
D
G
F
N
--------
A
K
G
G
R
G
P
-
A
E
F
D
A
L
I
R
Q
K
---
L
G
---------
D
A
V
Y
G
P
G
D
L
T
GGHAT
A
D
E
--
A
V
R
A
G
G
W
P
S
R
A
D
L
AG
K
F
L
F
E
L
I
-----
P
G
T
----------
V
--
E
E
------
K
N
P
-------
F
D
K
---------------------
L
W
T
D
V
E
Y
A
G
H
L
K
D
-----------
L
-------
A
A
Q
G
K
L
A
Q
ST
A
F
P
A
V
H
G
A
----
A
P
G
D
----
P
R
E
R
Y
A
D
P
A
L
R
P
W
F
---
V
V
----
F
D
G
D
A
A
T
------
Y
L
N
G
S
I
D
T
S
W
Y
D
T
-
R
H
Y
L
L
--
I
M
T
---
D
A
H
N
V
P
P
V
I
D
G
T
H
-
P
T
E
A
E
A
L
A
R
V
----
R
Q
L
A
A
A
HAS
F
A
T
A
DWYPL
P
S
V
L
K
T
V
V
P
R
GA--
13
HHSearch
44.95
14%
-140
- C4 -
1J1V
-
A:
[2-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
D
N
---
I
Q
K
T
V
A
E
----
Y
Y
K
I
----
K
V
A
D
L
L
S
--------------------------------------------------------------------------------------------------------------------
12
HHSearch
44.15
21%
-167
- C4 -
3PVV
-
DNAA_MYCTA
A:
[5-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
A
A
T
---
I
M
A
A
T
A
E
----
Y
F
D
T
----
T
V
E
E
L
R
G
--------------------------------------------------------------------------------------------------------------------
24
Fugue
39.96
9%
26
- C1 -
2E1B
1
ALAXM_PYRHO
A:
[1-216]
---------------------------------------------------------------------------------------------------
M
I
N
M
T
----
R
K
L
Y
-----------
Y
E
D
A
--------
Y
-----
L
K
E
A
K
G
R
--------
V
L
-----------------------
E
I
------
R
D
N
A
I
L
L
D
Q
T
I
F
Y
P
T
G
--
G
G
---------
Q
P
H
D
R
G
T
I
N
G
V
E
-
V
L
D
V
Y
--
K
D
E
E
G
--------
N
V
W
H
V
V
K
-
E
------------
P
E
---------
K
F
K
V
G
D
E
V
E
--------
L
--
K
I
D
W
D
Y
R
Y
K
L
M
R
I
----
H
T
G
L
H
-----
L
L
E
----------
H
V
L
N
E
------
V
L
G
-------
E
G
N
---------------------
W
Q
L
V
G
S
G
M
S
V
E
K
G
-----------
R
-------
Y
D
I
A
Y
P
E
N
---
L
N
K
Y
K
E
Q
----
I
I
S
L
----
F
N
K
Y
V
D
E
G
G
E
V
K
I
W
---
W
E
G---
D
R
R
Y
T
Q
I
------
R
D
F
E
V
I
P
C
G
G
T
H
V
-
K
D
------------
I
K
E
I
G
H
I
K
K
L
K
R
-
S
S
I
G
R
G
K
Q
R
L
----
E
M
W
L
E
---------------------------
7
PsiBlast_PDB
38.47
28%
-29
- C4 -
3U61
3
DPA44_BPT4
B:
[203-296]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
N
F
P
D
F
R
K
T
----
I
G
E
L
D
-----
S
Y
S
----------
S
--
K
G
------
V
L
D
A---------------------------------
I
D
D
V
L
E
S
L
K
N
-----------
K
-------
D
V
K
Q
-
L
R
A
---
L
A
P
K
Y
A
A
D
Y
S
W
F
V
G
K
----
L
A
E
E
I
Y
S
R
V
T
P
Q
------
S
----
I
I
R
M
Y
E
I
------
V
G
E
N
-----------------------------------------------------------------------------------
20
Fugue
38.38
7%
37
- C5 -
2GT1
-
?
A:
[1-323]
-------------------------------------------------------------M
R
V
L
I
V
KTSS
M
G
D
V
L
H
T
L
P
A
L
T
D
A
Q
Q
A
I
PG
I
K
F
D
W
V
V
E
E
G
F
A
Q
----
I
P
S
W
-----------
H
A
A
V
--------
E
-----
R
V
I
P
V
A
I
--------
R
R
W
----------------
R
K
A
W
F
S
A
P
------
I
K
A
E
R
K
A
F
R
E
A
L
Q
A
K
N
YD
A
V
---------
I
D
A
Q
G
L
V
--
K
S
A
-
A
L
V
T
R
--
L
A
H
G
V
--------
K
H
G
M
D
W
Q
-
T
A
R
E
P
L
A
S
L
F
---
Y
N
---------
R
K
H
H
I
A
K
Q
---------------
Q
H
A
V
E
R
T
R
E
L
----
F
A
K
S
L
-----
G
Y
S
KPQTQGDYAI
A
--
Q
H
------
F
L
T
-------
N
L
P
TDAGE
Y
A
V
F
L
HATTRDDKHWP
E
E
H
W
R
E
L
I
G
L
L
A
D
SG
I
R
I
K
L
P
W
GA
P
-------
H
E
E
E
R
A
K
R
---
L
A
E
G
F
A
Y
----
V
E
V
L
P
KMS
L
E
G
V
A
R
V
L
A
G
A
K
F
V
---
V
S
V
DT
G
L
S
H
L
T
A
A
------
L
D
R
P
N
I
T
V
Y
G
P
T
D
-
P
G
-
L
I
G
G
Y
G
K
---
N
Q
M
V
C
R
A
P
G
N
E
L
S
-
Q
L
T
A
N
A
V
K
Q
F
----
I
E
E
N
A
E
KA------------------------
6
PsiBlast_PDB
37.31
28%
73
- C4 -
3U60
1
DPA44_BPT4
B:
[203-296]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
N
F
P
D
F
R
K
T
----
I
G
E
L
D
-----
S
Y
S
----------
S
--
K
G
------
V
L
D
A
G
I
L
S
L
V
T
N
D
---------------------
R
G
A
I
D
D
V
L
E
S
L
K
N
-----------
K
-------
D
V
K
Q
-
L
R
A
---
L
A
P
K
Y
A
A
D
Y
S
W
F
V
G
K
----
L
A
E
E
I
Y
S
R
V
T
P
Q
------
S
----
I
I
R
M
Y
E
I
------
V
G
E
N
-----------------------------------------------------------------------------------
2
PsiBlast_PDB
36.24
32%
23
- C4 -
4M8O
3
DPOE_YEAST
A:
[947-1006]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
P
Y
K
A
M
------
I
L
P
S
S
K
E
E
G
K
G
I
K
K
R
Y
--
A
V
---------
F
N
E
D
G
S
L
--
A
E
L
K
G
F
E
L
K
--
R
R
G
E
L
--------
Q
L
I
K
-----
N
F
Q
S
D
I
F
K
V
---
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
35.92
28%
81
- C4 -
3U5Z
1
DPA44_BPT4
B:
[203-296]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
N
F
P
D
F
R
K
T
----
I
G
E
L
D
-----
S
Y
S
----------
S
--
K
G
------
V
L
D
A
G
I
L
S
L
V
T
N
D
---------------------
R
G
A
I
D
D
V
L
E
S
L
K
N
-----------
K
-------
D
V
K
Q
-
L
R
A
---
L
A
P
K
Y
A
A
D
Y
S
W
F
V
G
K
----
L
A
E
E
I
Y
S
R
V
T
P
Q
------
S
----
I
I
R
M
Y
E
I
------
V
G
E
N
-----------------------------------------------------------------------------------
4
PsiBlast_PDB
35.84
23%
50
- C4 -
5AMR
-
?
A:
[415-617]
----------------------------------------------------------------------------------------------------
F
K
N
F
----
C
G
I
G
-----------
K
-
K
Q
FKNKMLED--------
S
K
P
K
I
--------
L
D
F
----------------
D
D
A
N
M
Y
L
A
------
S
L
T
M
M
E
Q
S
K
K
I
L
S
K
S
N
--
G
L
---------
K
P
D
N
F
I
L
--
N
E
F
-
G
S
R
I
K
D
A
N
K
E
T
Y
--------
D
N
M
H
K
I
----
F
E
T
G
Y
W
Q
C
I
S
D
F
S
---------
T
L
M
K
N
I
L
S
V
--------
S
--
Q
Y
N
R
H
N
T
F
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
35.37
9%
-20
- C3 -
1YNB
-
?
A:
[7-173]
-------------------------------------------------------------------------------------------------
M
D
D
V
V
K
F
----
I
H
E
V
-----------
G
S
L
K
--------
L
-----------------------------------------------------------
T
P
R
S
G
W
L
K
L
G
--
I
R
---------
L
P
E
S
-------------------------------------
V
A
E
H
N
F
R
A
A
I
---
I
A
---------
F
I
L
A
L
K
S
G
E
--------
S
-----
V
E
K
A
C
K
A
A
T
A
----
A
L
F
-
H
-----
D
L
H
----------
E
--
A
R
------
T
M
D
-------
L
H
K
---------------------
I
A
R
R
Y
V
S
C
D
E
E
G
A
-----------
R
-------
E
E
Q
-------------
L
S
----
W
M
E
S
----
K
P
D
F
S
D
V
E
V
Y
V
S
D
A
---
D
K
----
L
E
L
A
F
Q
G
------
V
E
Y
S
--------
Q
-
Q
V
-
S
Y
--
A
I
R
---
F
A
E
N
V
E
L
K
T
D
A
A
K
-
E
I
Y
R
V
L
M
E
R
K
----
N
P
V
W
W
R
--------------------------
14
HHSearch
32.10
20%
-145
- C4 -
2M5Z
-
?
A:
[17-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
------
K
Y
Y
K
Q
I
M
Q
F
I
G
E
G
W
A
I
-
N
K
--
I
I
D
---
W
I
K
K
--------------------------------------------------------
1
PsiBlast_PDB
32.00
32%
44
- C4 -
4PTF
3
DPOE_YEAST
A:
[954-1013]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
P
Y
K
A
M
------
I
L
P
S
S
K
E
E
G
K
G
I
K
K
R
Y
--
A
V
---------
F
N
E
D
G
S
L
--
A
E
L
K
G
F
E
L
K
--
R
R
G
E
L
--------
Q
L
I
K
-----
N
F
Q
S
D
I
F
K
V
---
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
31.82
10%
-52
- C3 -
1W5C
9
PSBD_THEEB
D:
[1-350]
MTIAIG
R
A
P
A
E
RGWF
D
I
L
D
D
W
L
K
R
DRFVFVGWSGI
L
L
F
P
C
A
Y
L
A
L
G
G
W
L
T
G
T
TFVTSWYTHG
L
A
S
S
YLEGCNFLTVAVSTPANSMGHSLLLLWGPEA
Q
G
D
F
T
R
W
----
C
Q
L
G
------------
G
L
W
--------
T
-----
F
I
A
L
H
G
A
--------
F
G
L
----------------
I
G
F
M
L
R
Q
F
------
E
I
A
R
L
V
G
V
R
P
Y
N
A
I
A
F
--
S
----------
A
P
I
A
V
F
V
--
S
V
F
-
L
I
Y
P
L
--
G
Q
S
S
W
FFAPSFGV
A
A
I
F
R
F
L
-
L
F
F
-
Q
G
F
H
N
W
---
T
L
---------
N
P
F
H
M
M
G
V
A
--------
G
--
V
L
G
G
A
L
L
C
A
I
H
G
A
----
T
V
E
N
T
-----
L
F
Q
----------
D
--
G
E
------
G
A
S
-------
T
F
R
---------------------
A
F
N
P
T
Q
A
E
E
T
Y
S
M
-----------
V
-------
T
A
N
R
F
W
S
Q
---
I
F
G
I
A
F
S
----
N
K
R
W
----
L
H
F
F
M
L
F
V
P
V
T
G
L
W
---
M
S
----
A
I
G
V
V
G
L
ALNLRS
Y
D
F
I
S
Q
E
I
R
A
A
E
D
-
P
E
-
F
E
T-
F
Y
T
---
K
N
L
L
L
N
E
G
I
R
A
W
M
-
A
P
Q
D
Q
P
H
E
N
F
V
F
P
E
E
V
L
P
R
G
N-------------------------
23
Fugue
29.09
26%
-54
* C3 *
1Z65
-
PRND_MOUSE
A:
[1-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-
N
R
--
L
G
T
---
W
W
V
A
I
L
C
M
L
L
A
S
H
--
L
S
T
V
K
A
R
G
I
----
K
-------------------------------
15
HHSearch
25.76
17%
-
* C4 *
3TWE
1
?
A:
[10-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
D
L
Q
E
R
L
R
K
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.35
19%
5
- C4 -
4G06
2
?
A:
[46-78]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
--
I
R
A
---
W
S
P
D
H
T
K
M
--
G
K
G
I
T
L
S
N
E
E
F
Q
T
M
----
V
D
A
F
K
G
--------------------------