@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu21480: (2016-07-03 )
MEKLFKEVKLEELENQKGSGLGKAQCAALWLQCASGGTIGCGGGAVACQNYRQFCR
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--10.....-----...20.....----------...30--........40........50.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
K
L
F
K
E
V
K
--
L
E
E
L
ENQ-----KGSGL
G
K
A
Q
C
----------
A
A
L
W
L
--
Q
CASGGTIGCGG
G
A
V
A
C
Q
N
Y
R
Q
FCR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
83.73
100%
-182
- C4 -
2MIJ
1
SUNA_BACSU
A:
[1-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
K
A
Q
C
----------
A
A
L
W
L
--
Q
C
A
S
G
G
T
I
G
C
G
G
G
A
V
A
C
Q
N
Y
R
Q
F
C
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
83.73
100%
-182
- C4 -
2MIJ
1
SUNA_BACSU
A:
[1-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
K
A
Q
C
----------
A
A
L
W
L
--
Q
C
A
S
G
G
T
I
G
C
G
G
G
A
V
A
C
Q
N
Y
R
Q
F
C
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.73
100%
-182
- C4 -
2MIJ
1
SUNA_BACSU
A:
[1-37]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
K
A
Q
C
----------
A
A
L
W
L
--
Q
C
A
S
G
G
T
I
G
C
G
G
G
A
V
A
C
Q
N
Y
R
Q
F
C
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
48.42
31%
-192
- C6 -
4ICG
-
?
B:
[15-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
Q
A
R
E
C
T
--
L
E
T
L
E
E
M
-----
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
45.40
20%
-34
- C4 -
1DDT
-
?
?:
[200-380]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SCINLD
W
D
V
I
R
D
K
T
K
T
K
I
E
S
L
K
E
H
G
P
I
K
N
K
M
S
E
SPNKTVS
E
E
K
A
K
Q
Y
L
E
E
F
H
Q
T
A
L
E
HPEL
S
E
L
K
T
V
T
GTNPVFA
G
A
N
Y
A
A
W
A
V
N
V
A
Q
V
I
D
--
S
E
T
A
D
N
-----------
L
E
K
T
T
----------
A
A
L
S
I
--
L
P
G
I
G
S
V
M
G
I
A
D
G
A
V
H
H
N
T
E
E
I
V
A
Q
S
I
A
L
S
S
L
M
V
A
Q
A
I
P
L
VGELVDIGFAAY
N
F
V
E
S
I
I
N
L
F
Q
V
V
H
N
S
Y
N
R
P
A
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.14
24%
-104
- C- -
1G39
-
HNF1A_MOUSE
C:
[1-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
Q
L
Q
--
T
E
L
L
A
A
L
-----
L
E
S
G
L
S
K
E
A
L
----------
I
Q
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
44.56
21%
36
- C2 -
3C0F
-
Y1514_ARCFU
B:
[3-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IMDE
I
V
N
L
Q
K
E
V
S
--
L
E
E
A
E
R
Y
ANIAS
Y
G
D
G
I
L
L
S
V
H
DSTGYRAPEV
Y
C
C
G
E
--
K
P
W
E
V
Y
A
C
N
R
G
A
N
L
I
S
V
N
Q
F
E
F
Y
F
R
IEVEG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
43.57
25%
-90
- C- -
1G39
-
HNF1A_MOUSE
A:
[1-28]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
Q
L
Q
--
T
E
L
L
A
A
L
-----
L
E
S
G
L
S
K
E
A
L
----------
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.89
24%
-133
- C6 -
1OV9
-
?
A:
[13-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
Y
A
R
E
L
T
--
I
E
Q
L
E
E
A
-----
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
42.31
11%
-16
* C4 *
4DKC
1
IL34_HUMAN
A:
[15-175]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
E
E
C
T
V
T
G
F
L
R
D
K
L
Q
Y
R
S
R
L
Q
YMKHYFPIN
Y
K
I
S
V
P
Y
E
G
V
F
R
I
A
N
--
V
T
R
L
Q
R
--------
A
Q
V
S
E
R
E
L
----------
R
Y
L
W
V
--
L
V
S
L
S
A
T
E
S
V
Q
D
V
L
L
E
G
H
P
S
W
K
Y
L
Q
E
V
E
T
L
L
L
N
V
Q
Q
G
L
TD
V
E
V
S
P
K
V
E
S
V
L
S
L
L
N
APGPNL
K
L
V
R
P
K
A
L
L
D
N
C
F
R
V
M
E
L
L
Y
C
SCCKQSSVLNWQDCE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
39.61
23%
-111
* C6 *
3UEB
-
?
A:
[15-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
E
L
S
--
E
E
Q
L
I
E
I
-----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
38.17
41%
-164
* C5 *
2KK4
-
Y2094_ARCFU
A:
[71-87]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
E
K
S
K
P
V
T
--
L
E
E
L
K
S
Y
-----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
37.99
33%
-125
- C6 -
1HA8
-
MER23_EUPRA
A:
[33-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
S
N
S
D
C
----------
T
A
F
L
S
--
Q
C
Y
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
36.34
31%
5
- C6 -
3NR7
-
HNS_SALTY
A:
[15-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
Q
A
R
E
S
T
--
L
E
T
L
E
E
M
-----
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
35.53
16%
88
- C3 -
1KBL
1
PPDK_CLOSY
A:
[1-375]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKWVYKFEEGNASMRNLLG
G
K
G
C
N
L
A
E
M
T
I
L
GMPIP
Q
G
F
T
VT
T
E
A
C
T
E
Y
Y
N
S
GKQI
T
Q
E
I
Q
D
Q
I
F
E
A
I
T
W
L
E
E
L
-----
N
G
K
K
F
G
D
T
E
-----------
D
P
L
L
V
--
S
V
R
S
G
A
R
A
S
M
P
G
M
M
D
T
I
L
N
L
G
L
N
D
V
A
V
E
G
F
A
K
K
T
GN
P
R
F
A
Y
D
S
Y
R
R
F
I
Q
M
Y
S
D
VVMEVPK
S
H
F
E
K
I
I
D
A
M
K
E
E
K
GVHFDTDLT
A
D
D
L
K
E
L
A
E
K
F
K
A
V
Y
K
E
A
MNGEEFPQE
P
K
D
Q
L
M
G
A
V
K
A
V
F
R
S
W
DN
P
R
A
I
V
Y
R
R
M
N
DIPGDW
G
T
A
V
N
V
Q
T
M
V
F
GNKGET
S
G
T
G
V
A
F
TRNPSTGEKGIYGEYLINAQ
G
E
D
V
V
A
GVRTPQPITQLENDM
P
D
C
Y
K
Q
F
M
D
L
A
M
K
L
E
K
H
F
R
D
M
Q
D
M
E
F
T
I
E
EG
K
L
Y
F
LQTRN
G
K
R
T
A
P
A
A
L
Q
I
A
C
D
L
V
D
E
GMIT
E
E
E
A
V
V
R
IEAKSLDQL
7
HHSearch
33.77
31%
-66
- C6 -
2H2M
-
COMD1_HUMAN
A:
[37-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
L
Y
P
E
V
P
--
P
E
E
F
R
P
F
-----
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
33.54
17%
41
- C1 -
4C4A
4
ANM7_MOUSE
A:
[27-688]
H
Q
E
I
A
R
SS
Y
A
D
M
L
H
D
K
D
R
N
I
K
Y
Y
Q
G
I
R
A
A
V
S
R
V
K
D
R
G
Q
K
A
L
V
L
D
I
GTGTG
L
L
S
M
M
A
V
T
A
GAD
F
C
Y
A
I
E
VF
K
P
M
A
E
A
A
V
K
I
V
E
R
N
GFSDK
I
K
V
I
NKHSTEVTVGPDGDLPCRAN
I
L
I
T
ELFDTELIGEG
A
L
P
S
Y
E
H
A
H
K
HLVQEDCEAVPH
R
A
T
V
Y
A
Q
L
V
E
S
R
R
M
W
S
W
N
KL
F
P
V
R
V
R
T
SL
G
E
Q
V
I
V
P
P
S
E
L
E
R
CPGAPSVCDIQLNQVSPADFTVLSDVLPM
F
S
V
D
FSKQVSS
S
A
A
C
H
S
R
Q
F
V
P
LASGQA
Q
V
V
L
S
W
W
D
I
E
MDPEGK
I
K
C
T
MAPFWAQTDPQE
L
Q
W
R
DH
W
M
Q
C
V
Y
F
L
P
Q
E
E
P
V
V
QG
S
P
R
C
L
V
A
H
H
D
DY
C
V
W
Y
S
L
Q
R
TSPQVRPVCDCQAHLLWN
R
P
R
F
G
E
I
N
D
Q
D
R
T
D
H
Y
A
Q
A
L
R
T
V
LLPG
S
V
C
L
C
V
S
D
GSL
L
S
M
L
A
H
H
L
GAE
Q
V
F
T
V
E
SS
V
A
S
Y
R
L
M
K
R
I
F
K
V
N
HLEDK
I
S
V
I
NKRPELLTAADLEGKKVS
L
L
L
G
EPFFTTSLLPWHNL
Y
F
W
Y
V
R
T
S
V
DQHLAPGAVVMPQ
A
A
S
L
H
A
V
I
V
E
F
RDLWRIRSPCGDCEGFDV
H
I
M
D
D
M
I
K
H
S
L
D
FRE
S
R
E
A
E
P
H
PLWE
Y
P
C
R
S
LSK
P
Q
E
I
L
TFD
F
Q
Q
P
I
P
Q
Q
P
--
M
Q
S
K
G
T
M
-----
E
L
T
R
P
G
K
S
H
G
----------
A
V
L
W
M
E
Y
Q
L
T
P
D
S
T
I
S
T
G
L
I
N
P
G
D
C
C
W
N
P
H
C
K
Q
A
V
Y
F
L
STPR
S
V
S
Y
V
V
E
F
H
PLTG
D
I
T
M
E
F
R
L
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
29.31
5%
-96
- C4 -
2KBR
1
USH1C_HUMAN
A:
[1-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
R
K
V
A
R
E
F
--
R
H
K
V
D
F
L
-----
I
E
N
D
A
E
K
D
Y
L
----------
Y
D
V
L
R
--
M
Y
H
Q
T
M
D
V
A
V
L
V
G
D
L
K
L
V
I
N
E
P
S
R
L
P
L
F
D
A
I
RPLIP
L
K
H
Q
V
E
Y
D
Q
L
T
PR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
19.35
15%
120
- C5 -
4EDN
-
PAXI_HUMAN
L:
[4-20]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
D
--
L
D
A
L
L
A
D
-----
L
E
S
T
T
S
H
I
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
16.62
8%
46
- C6 -
1PU1
-
Y677_METTH
A:
[3-15]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
K
L
T
--
E
G
D
L
D
E
I
-----
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------