@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu22020: (2016-07-04 )
MSEVHKAISAHSSKQHEHIKAFMRLENMRELAIEEAVAKCRNDEPYTTDAINEITEQMNQLAKKGIVPTRRLVSKEMVREYVSRM
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.......10........----------.20.-..--.--....30----.........40---.-.--.--.---.....50--.........60.-..---..--...--70......--..80....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
E
V
H
K
A
I
S
A-HSS
K
Q
H
E
H
----------
I
K
A
F
-
M
R
--
L
--
E
N
M
R
E
-----
L
A
I
E
E
A
V
A
K
C----R-N--D--E---PYT
T
D
A
---
I
N
E
I
T
E
Q
M
N
Q
L
A
-
K
K---GI--V
P
T
--
R
R
L
V
S
K
E
M
--
V
R
E
Y
V
SRM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
57.41
9%
37
- C2 -
4XGC
1
ORC2_DROME
B:
[62-352]
--------------------------------------------------------------------E
G
S
I
N
A
I
M
E
E
Y
R
S
Y
F
P
K
W
M
C
I
L
N
E
G
F
N
I
L
L
YGLGSK
H
Q
L
L
Q
S
F
H
R
EVLHKQT
V
L
V
V
N
GFFPSLT
I
K
D
M
L
D
S
I
T
S
DILDAGISPAN
P
H
E
A
V
D
M
I
E
E
E
F
A
L
I
PE
T
H
L
F
L
I
V
HNLDGAMLRN
V
K
A
Q
A
I
L
S
R
L
A
R
IPN
I
H
L
L
A
S
I
D
H
INTPLLWD
Q
G
K
L
C
S
F
N
F
S
W
W
DCTTMLPYTNETAFENSLLVLA
L
S
-
S
M
R
S
V
F
S
S
-
L
T
T
N
S
R
G
I
----------
Y
M
L
I
-
V
K
--
Y
--
Q
L
K
N
K
GNATG
M
P
F
R
D
L
Y
S
S
C
----
R
-
E
---------
A
F
L
V
S
S
---
D
L
A
L
R
A
Q
L
T
E
F
L
-
D
H
---
K
L
--
V
K
S
--
K
R
S
-
S
E
Q
L
--
T
I
P
I
D
G
A
L
L
Q
Q
F
L
E
E
Q
E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
54.23
19%
68
- C2 -
4LUQ
3
?
A:
[20-428]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMT
A
T
S
D
-
L
I
E
S
L
I
S
Y
-
S
W
D
D
W
Q
--------------------------
V
T
R
-----
Q
E
A
R
R
V
I
A
A
I
----
R
-
N
--
D
----------------
N
V
P
D
A
T
I
A
A
L
D
-
K
S
---
G
S
--
L
I
K
L
F
Q
R
V
G
P
P
E
L
--
A
R
S
L
I
A
S
I
A
G
R
TTMQ
R
Y
Q
A
R
N
A
L
I
R
S
L
INNPLGTQTDNWIYFP
T
I
T
F
F
D
I
C
A
D
L
A
D
A
A
G
R
L
GFA
A
A
G
A
T
G
V
A
S
QAIQGPFSGVGATGVNPTDLPSIA
F
G
D
Q
L
K
L
L
N
KD
P
A
T
V
T
K
Y
SNPLGD
L
G
A
Y
L
S
Q
LS
P
Q
D
K
L
N
Q
A
Q
T
L
V
G
QPISTLFPDAYPGNPPS
R
A
K
V
M
S
A
A
A
R
K
Y
DLT
P
Q
L
I
G
A
I
I
L
A
E
Q
R
D
QT
R
D
E
D
A
K
D
Y
Q
A
A
V
SIKSAN
T
S
I
G
LGQVV
V
S
T
A
I
K
Y
ELFTDLLG
Q
P
V
R
R
G
LS
R
K
A
V
A
T
L
L
A
S
D
E
F
N
I
F
A
T
A
R
Y
I
R
Y
V
A
N
L
A
S
Q
QDLRKL
P
K
T
R
G
A
F
PSID
L
R
A
Y
A
G
NPRNWP
R
D
N
V
R
A
L
A
S
E
Y
T
S
RPWDDNLSPG
W
P
M
F
V
D
D
A
Y
A
T
F
L
DPGMRFP
31
Fugue
53.06
12%
175
* C2 *
2GTS
-
?
A:
[4-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
M
D
T
E
E
V
R
E
F
----------
V
G
H
L
-
E
R
--
F
--
K
E
L
L
R
-----
E
E
V
N
S
L
S
N
H
F
----
H
-
N
--
L
--
E
---
S
W
R
D
A
R
---
R
D
K
F
S
E
V
L
D
N
L
---
K
---
S
T
--
F
N
E
--
F
D
E
A
A
Q
E
Q
--
I
A
W
L
K
E
R
I
R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
51.72
27%
79
- C2 -
2L57
-
?
A:
[1-126]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
E
G
I
K
Q
I
N
F
-
Q
S
I
N
V
V
E
N
LEEAKEGI
P
T
I
I
M
F
-
K
T
DT
C
--
P
Y
C
V
E
-----
M
Q
K
E
L
S
Y
V
S
K
----
E
-
R
--
E
--
G
---
K
F
N
I
Y
Y
---
A
R
L
E
E
E
K
N
I
D
L
A
-
Y
K
Y
DA
N
I
--
V
P
T
--
T
V
F
L
D
K
E
G
--
N
K
F
Y
V
H
Q
G
LMR
K
N
N
I
E
T
I
L
N
S
L
GVKEGHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
50.35
18%
-63
- C2 -
2LN3
-
?
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
-
L
T
R
T
I
T
S
Q
-
N
K
E
E
L
L
E
I
----------
A
L
K
F
-
I
S
--
Q
--
G
L
D
L
E
-----
V
E
F
D
S
T
----------------------
D
D
K
E
---
I
E
E
F
E
R
D
M
E
D
L
A
-
K
K
---
T
G
--
V
Q
I
--
Q
K
Q
W
Q
G
N
K
--
L
R
I
R
L
K
G
S
LEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
42.79
10%
143
- C2 -
1SZI
-
PLIN3_MOUSE
A:
[206-431]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRLPLT
E
A
E
L
A
L
I
A
T
P
P
E
D
-
S
D
M
A
S
L
Q
Q
-
Q
R
Q
E
Q
N
Y
F
----------
V
R
L
G
-
S
L
--
S
--
E
R
L
R
N
-----
H
A
Y
E
H
S
L
G
K
L
----
Q
-
N
--
A
--
R
---
Q
K
A
Q
E
T
---
L
Q
Q
L
T
S
V
L
G
L
M
E
-
S
V
---
K
Q
--
A
K
P
--
E
Q
V
E
A
R
A
L
S
M
F
R
D
I
T
Q
Q
L
Q
S
M
C
V
A
L
G
A
S
I
QGLP
S
H
V
R
E
Q
A
Q
Q
A
R
S
Q
V
N
D
L
Q
A
T
F
S
GIHSFQDLS
A
G
V
L
A
Q
T
R
E
R
I
A
R
A
R
E
A
L
D
N
T
V
E
Y
V
A
Q
N
TPAMWLVGPFAPGITE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.38
18%
-684
- C3 -
3GEU
-
ICAR_STAAC
A:
[2-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
M
K
D
-----
K
I
I
D
N
A
I
T
L
F
----
S
-
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.04
24%
-116
* C3 *
1TKE
-
SYT_ECOLI
A:
[111-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
T
Q
E
D
---
V
E
A
L
E
K
R
M
H
E
L
A
-
E
K
---
N
Y
--
D
V
I
--
K
K
K
V
S
W
H
E
--
A
R
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.85
28%
15
- C3 -
1S4O
3
KRE2_YEAST
A:
[66-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
D
--
E
---
P
F
T
E
E
F
---
K
E
A
V
T
K
A
V
S
S
E
V
-
K
F
---
G
I
--
L
P
K
--
E
H
W
S
Y
P
E
W
--
I
N
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.71
28%
46
- C3 -
1S4P
3
KRE2_YEAST
A:
[66-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
D
--
E
---
P
F
T
E
E
F
---
K
E
A
V
T
K
A
V
S
S
E
V
-
K
F
---
G
I
--
L
P
K
--
E
H
W
S
Y
P
E
W
--
I
N
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.68
28%
11
- C3 -
1S4N
1
KRE2_YEAST
A:
[66-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
D
--
E
---
P
F
T
E
E
F
---
K
E
A
V
T
K
A
V
S
S
E
V
-
K
F
---
G
I
--
L
P
K
--
E
H
W
S
Y
P
E
W
--
I
N
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
38.59
8%
74
- C2 -
2F76
-
GAG_SRV1
X:
[1-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
-
Q
E
L
S
Q
H
E
R
-
Y
V
E
Q
L
K
Q
A
----------
L
K
T
R
G
V
K
--
V
--
K
Y
A
D
L
-----
L
K
F
F
D
F
V
K
D
T
CPWF
P
-
Q
--
E
--
G
---
T
I
D
I
K
R
---
W
R
R
V
G
D
C
F
Q
D
Y
Y
-
N
T
FGP
E
K
--
V
P
V
--
T
A
F
S
Y
W
N
L
--
I
K
E
L
I
D
K
K
EVNPQVM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
38.45
19%
36
- C3 -
1KHC
11
A:
[87-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
-----
K
A
M
Y
H
T
L
E
K
A
----
R
-
V
R
A
G
--
K
---
T
F
S
S
S
P
GES
L
E
D
Q
L
K
P
M
L
E
W
A
-
H
G
---
G
F
--
K
P
T
--
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.49
11%
-107
- C3 -
3E19
-
?
A:
[7-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
E
M
----
G
-
P
--
G
--
D
---
K
G
I
V
V
N
---
I
L
G
G
H
N
A
R
Q
K
L
V
-
S
M
---
G
L
--
T
P
G
--
A
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
34.44
36%
34
- C3 -
3BHP
-
YNZC_BACSU
A:
[3-16]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
K
I
A
R
I
N
E
L
A
-
A
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
34.14
15%
40
- C3 -
4KWA
1
?
A:
[3-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
A
R
R
-----
R
I
L
E
T
A
W
R
L
I
----
A
-
R
--
R
GY
H
---
N
V
R
I
H
D
---
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
33.91
8%
-170
- C3 -
2MHJ
-
?
A:
[38-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
A
L
L
-
H
D
----
L
-
P
--
G
--
Q
---
E
L
N
L
S
Q
---
L
H
A
A
A
A
R
I
G
D
F
Y
Q
E
K
---
G
Y
--
V
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
33.77
14%
-19
- C3 -
2G7G
-
?
A:
[11-37]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
R
E
-----
R
I
A
E
A
A
L
E
L
V
----
D
R
D
--
G
------
D
F
R
M
P
D
---
L
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
33.06
7%
5
- C2 -
2DE3
2
SOXB_RHOSG
A:
[20-363]
DTLTYSNSPVPN
A
L
L
T
A
S
E
S
G
F
L
D
A
A
G
I
E
L
D
V
L
SGQQGTVHFTYDQP
A
Y
T
R
F
GGE
I
P
P
L
L
S
E
G
LRAPGRTRLL
G
I
T
P
L
L
G
RQ
G
F
F
V
R
DDSPITAAADLAG
R
R
I
G
V
S
A
S
A
I
R
I
L
R
GQLGDYLELD
P
W
R
Q
T
L
V
A
L
G
S
W
E
A
R
A
L
L
H
T
L
E
H
G
ELGVDD
V
E
L
V
P
I
S
S
P
GVDVP
A
E
Q
L
E
E
SATVK
G
A
D
L
F
PD
V
A
R
G
Q
A
A
V
L
A
SGDVD
A
L
Y
S
W
L
P
W
A
G
E
L
Q
A
T
G
A
R
P
VVDLGLDERN
A
Y
A
S
V
W
T
V
S
S
G
L
V
R
Q
R
P
G
L
V
Q
R
L
V
D
-
A
A
V
D
A
G
L
W
-
A
R
D
H
S
D
A
V
----------
T
S
L
H
-
A
A
--
N
--
L
G
V
S
T
-----
G
A
V
G
Q
G
F
G
A
D
----
F
-
Q
--
Q
--
R
LVP
R
L
D
H
D
A
---
L
A
L
L
E
R
T
Q
Q
F
L
L
-
T
N
---
N
L
--
L
Q
E
--
P
V
A
L
D
Q
W
A
--
A
P
E
F
L
N
N
S
L
N
R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
31.49
13%
65
- C2 -
2AN7
-
PARD_ECOLX
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
R
L
T
I
D
M
T
----
D
Q
Q
H
Q
S
----------
L
K
A
L
-
A
A
--
L
Q
G
K
T
I
K
Q
-----
Y
A
L
E
R
L
F
P
G
D
----
A
-
D
--
A
--
D
---
Q
A
W
Q
E
L
---
K
T
M
L
G
N
R
I
N
D
G
L
-
A
G
---
K
V
ST
K
S
V
--
G
E
I
L
D
E
E
L
--
S
G
D
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------