@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu22290: (2016-07-04 )
MKTRPKKAGQQKKTESKAIDSLDKKLGGPNRPST
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........--20........30...-----------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKTRPKKAGQQKK
T
E
S
K
A
I
--
D
S
L
D
K
K
LGGPNRPST-----------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
69.67
29%
171
- C10 -
2OAJ
2
SRO7_YEAST
A:
[2-891]
KNKI
F
S
L
A
E
TNKYGMS
S
K
P
I
A
A
A
F
D
FTQN
L
L
A
I
A
T
VT
G
E
V
H
I
Y
G
Q
QQ
V
E
V
V
I
K
L
EDRSAIK
E
M
R
F
V
KGI
Y
L
V
V
I
N
AKD
T
V
Y
V
L
S
LYSQKVL
T
T
V
F
V
PGKIT
S
I
D
T
D
ASLD
W
M
L
I
G
L
QNG
S
M
I
V
Y
DIDRDQLSS
F
K
L
D
NLQKSSFFPAARLSPIV
S
I
Q
W
NPRDIG
T
V
L
I
S
Y
EY
V
T
L
T
Y
S
LVENEIK
Q
S
F
I
Y
E
L
P
PFAPGGDFSEKTNEKRTPKVI
Q
S
L
Y
H
PNSL
H
I
I
T
I
H
EDN
S
L
V
F
W
DANSGHMI
M
A
R
T
VFETEINVPQPDYIRDSSTNAAKIS
K
V
Y
W
M
C
E
NNPE
Y
T
S
L
L
I
S
H
K
S
I
SRGDN
Q
S
L
T
M
I
D
LGYTPRYSITS
Y
E
G
M
K
N
Y
Y
A
N
PK
Q
M
K
I
F
P
L
PTNVPIV
N
I
L
P
I
P
RQSPYFAGCHNPG
L
I
L
L
I
L
GNG
E
I
E
T
M
L
Y
PSGIFTDKASLFPQNLSWLRPLATT
S
M
A
A
S
V
P
NK
L
W
L
G
A
L
S
A
A
QNKDYLLK
G
G
V
R
T
KRQKLPAE
Y
G
T
A
F
I
T
G
H
SNG
S
V
R
I
Y
D
ASHGDIQDN
A
S
F
E
V
N
L
S
R
T
L
NKAKELAVD
K
I
S
F
AAETL
E
L
A
V
S
I
ETG
D
V
V
L
F
K
Y
E
V
N
QFFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG
F
V
G
I
A
Y
AA
G
S
L
M
L
I
D
RRGPAIIYMENIREISGAQSACVT
C
I
E
F
V
I
M
EYGDDGYSSI
L
M
V
C
G
T
DMG
E
V
I
T
Y
K
I
L
PASGG
K
F
D
V
Q
L
MDITNVTSKGPIH
K
I
D
A
F
S
KETKSSCLAT
I
P
K
M
Q
N
L
SKG
L
C
I
P
G
I
V
L
I
T
G
FD
D
I
R
L
I
T
LGKS
K
S
T
H
K
G
F
KYPLA
A
T
G
L
S
Y
I
S
T
V
E
K
NN
D
R
K
N
L
T
V
I
I
T
L
E
ING
H
L
R
V
F
T
I
PDFKEQ
M
S
E
H
IP
F
P
I
A
AKYITE
S
S
V
L
RNG
D
I
A
I
RVSEF
Q
A
S
L
F
S
TVKEQDTLA
P
V
S
D
T
L
Y
ING
I
R
I
P
Y
R
P
Q
V
N
S
L
Q
W
A
R
G
T
V
Y
C
T
P
A
Q
L
N
E
L
L
G
G
V
N
R
P
A
S
KY
K
E
S
I
I
A
E--------------------------------------------------------------------------------------------------------------------------------
14
Fugue
67.43
14%
-490
- C9 -
2WSS
-
ATP5H_BOVIN
U:
[30-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
S
W
N
E
T
L
T
S
R
L
V
--
D
D
F
E
K
K
F
N
Y
T
A
Q
V
D
A
-----------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
61.93
42%
129
- C9 -
2MVL
-
TACD2_HUMAN
A:
[298-323]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
R
R
K
S
G
K
Y
K
K
V
E
I
K
E
L
--
G
E
L
R
K
E
------
P
S
L
-----------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
55.69
20%
114
* C9 *
2K6T
-
?
B:
[25-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
P
E
M
R
E
K
L
C
G
H
H
F
V
--
R
A
L
V
R
V
C
G
G
P
R
W
S
T
E
A----------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
54.32
21%
229
- C9 -
2GAI
-
TOP1_THEMA
A:
[7-601]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
Y
I
V
V
ES
P
A
K
A
K
T
I
K
S
I
L
GNE
Y
E
V
F
A
SMGHIIDLPKSKFGVDLEKDF
E
P
E
F
A
VIKGK
E
K
V
V
E
K
L
K
D
L
A
K
K
G
E
L
L
I
ASDMD
R
E
G
E
A
I
A
W
H
I
A
R
V
T
NTLGRKN
R
I
V
F
SEIT
P
R
V
I
R
E
A
V
K
N
PREID
M
K
K
V
R
A
Q
L
A
R
R
I
L
D
R
I
V
G
Y
S
L
S
P
V
L
W
R
N
FK
S
N
L
S
AG
R
V
Q
S
A
T
L
K
L
V
C
D
R
E
R
E
I
L
R
F
V
P
K
K
Y
H
R
I
T
V
N
F
DG
L
T
A
E
I
DVK
E
K
K
F
F
D
A
E
T
L
K
E
I
Q
S
ID
E
L
V
V
E
E
K
K
V
S
V
K
K
F
A
P
P
EPFK
T
S
T
L
Q
Q
E
A
Y
S
K
LGFS
V
S
K
T
M
M
I
A
Q
Q
L
Y
E
G
V
E
T
KD
G
H
I
A
F
I
TYMRTDSTRVS
D
Y
A
K
E
E
A
R
N
L
I
T
E
V
FGEEYVGAHEAIRPTNVFMTPEEAGKYLN
S
D
Q
K
K
L
Y
E
L
I
W
K
R
F
L
A
S
Q
M
K
P
S
Q
Y
E
E
T
R
F
V
L
R
T
KDGK
Y
R
F
K
G
T
V
L
K
K
IFDGYEKVW
K
T
E
R
NTGEFPFEEG
E
S
V
K
P
V
V
V
K
I
E
E
Q
E
T
K
P
K
P
R
Y
T
E
G
S
L
V
--
K
E
M
E
R
L
--
G
I
G
R
P
S
T
Y
A
S
T
I
K
L
L
L
N
R
GY
I
K
K
I
RG
Y
L
Y
P
T
I
V
G
S
V
V
M
D
Y
L
E
K
KYSDVVS
V
S
F
T
A
E
M
E
K
D
L
D
E
V
E
Q
GKKT
D
K
I
V
L
R
E
F
Y
E
S
F
S
S
V
FDRN
D
R
I
V
V
D
F
P
T
NQKCSCG
K
E
M
R
L
S
F
G
KY
G
F
Y
L
K
C
E
C
G
K
T
R
S
V
K
NDE
I
A
V
I
D
DGKIFL
17
Fugue
51.35
22%
-38
- C9 -
2ROD
-
APR_MOUSE
B:
[17-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
L
P
P
E
F
A
A
Q
L
R
K
I
G
D
K
V
Y
--
C
T
W
S
A
-------
P
D
M
-----------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
42.91
17%
108
- C9 -
1TXP
-
HNRPC_HUMAN
A:
[180-207]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
A
I
K
K
E
L
T
Q
I
K
Q
K
V
D
S
L
L
--
E
N
L
E
K
I
E
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.93
42%
-
- C4 -
2AEN
-
VP4_ROTHD
A:
[3-14]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
V
L
D
G
P
Y
Q
P
T
T
-----------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.54
43%
-45
- C10 -
2VUT
1
AREA_EMENI
I:
[29-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
F
L
K
L
H
G
V
V
R
P
L
S
-----------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
36.83
71%
-0
- C6 -
2JUY
-
?
A:
[12-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
P
N
R
P
C
------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
36.72
25%
133
- C7 -
2K9U
-
FBLI1_HUMAN
B:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
S
K
P
E
K
R
V
A
S
S
V
F
I
T
L
A
------------
P
P
R
R
D
V
-----------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.51
50%
-
- C3 -
4DRR
-
?
A:
[3-12]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
D
G
P
Y
Q
P
T
T
-----------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
32.63
47%
173
* C10 *
2OAJ
-
SRO7_YEAST
A:
[867-881]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
Q
L
N
E
L
L
G
G
V
N
R
P
A
------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
29.14
16%
48
- C8 -
1CZ6
-
ANDT_ANDAU
A:
[1-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
V
C
R
Q
I
K
I
C
R
R
R
G
--
G
C
Y
Y
K
C
T
N
R
P
Y
---------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
26.36
50%
-
- C2 -
2MH0
-
TFE2_HUMAN
A:
[32-37]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
G
R
P
-------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
25.03
57%
-
- C1 -
5D2M
1
ZN451_HUMAN
G:
[44-50]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
G
P
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
21.88
36%
386
- C5 -
2VX8
-
AGFG1_HUMAN (first)
A:
[28-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
L
G
D
S
A
P
T
L
-----------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
16.97
40%
0
- C- -
2OU2
1
A:
[172-208]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
K
T
G
T
P
E
K
P
-------------------------------------------------------------------------------------------------------------------------------------------