@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu22540: (2016-07-04 )
MHRGKGMKFVGDSRIPAEKKPNIPKDYSEYPGKTEAFWPNFLLKEWMVGAVFLIGFLVLTIVHQPPLERMADPTDTGYIPLPDWYFLFLYQLLKYEYAAGSFTVVGAMIMPGLAFGALLLAPFLDRGTERRPWKRPVAVGMMLLAISAAVFLTWQSVATHDWAKAEEQGKITKEADIDTNAEGYKVFKEQGCISCHGDNLQGGAAGPSLVDSGLKPDEIKKIAVEGKGKMPAGVFKGNDKQLEELAKFISETTAK
Atome Classification :
(20 SA)
--------.........10....-....20........30...---.....40........50.......---.60----..-----.--.....-.70........80........90........--------------100--------..-----------.......110..-..-----------------...---120.......-130.......140.......150..----.....160.......170..-------------------.....180.......---190--------.---........200--------------------------.--.--......210-....--....---220......-----.---------------230...------------------------------------....240.......250...---
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------MHRGKG
M
K
F
VGDSRI-PAEKKPNIPK
D
Y
SEYPGKT---EAF
W
P
N
F
L
L
K
E
W
M
V
G
A
V
F
L
I
G
F
L
V
---
L
T
-----
I
V-----H--QP
P
L
E
-RMADPTDTGYIPL
P
D
W
Y
F
L
F
L
Y
Q
L
L
K
Y
EYAA--------------G----------
S
F
-----------
T
V
V
G
A
M
IM
P
G
L
A
-
F
G
-----------------
A
L
L
---
L
A
P
F
L
DRGTE-RRPWKR
P
V
A
V
G
M
M
L
L
A
I
S
A
A
V
F
L
T
W
----
Q
S
VATHDWA
K
A
E
EQGKITKE-------------------ADIDTNAE
G
Y
K
V
F
K
E---Q----------G---
C
I
S
CHGDNLQ---------------------------G--G--AAG
P
S
L
V
D--SGL
K
--
P
D
E
I
---
K
K
I
A
VEGKG-----K---------------M
P
A
G
V
F------------------------------------KG
N
D
K
Q
L
E
E
L
A
K
F
I
S
E
TTAK---
7
PsiBlast_PDB
81.47
30%
0
- C- -
2FYN
1
CYB_RHOSH
A:
[241-391]
------------------------------------------
T
---
V
P
F
W
P
Y
F
I
I
K
D
V
F
A
L
A
V
V
L
L
V
F
F
A
---
I
V
G
FMPN
Y
L
-----
G
--
H
P
D
N
Y
-
I
E
A
N
P
L
R
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
-
A
F
T
A
--------------
D
V
W
V
V
Q
I
A
N
F
I
S
F
-----------
G
I
I
D
A
K
F
F
G
V
L
A
M
F
G
-----------------
A
I
L
V
M
A
L
V
P
W
L
D
T
S
P
V
-
R
S
G
R
Y
R
P
M
F
K
I
Y
F
W
L
L
A
A
D
F
V
I
L
T
W
V
G
A
Q
Q
T
T
F
P
Y
D
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
60.56
30%
-106
- C3 -
2QJK
1
CYB_RHOSH
A:
[239-389]
------------------------------------------
T
---
V
P
F
W
P
Y
F
I
I
K
D
V
F
A
L
A
V
V
L
L
V
F
F
A
---
I
V
G
FMPN
Y
L
-----
G
--
H
P
D
N
Y
-
I
E
A
N
P
L
R
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
-
A
F
T
A
--------------
D
V
W
V
V
Q
I
A
N
F
I
S
F
-----------
G
I
I
D
A
K
F
F
G
V
L
A
M
F
G
-----------------
A
I
L
V
M
A
L
V
P
W
L
D
T
S
P
V
-
R
S
G
R
Y
R
P
M
F
K
I
Y
F
W
L
L
A
A
D
F
V
I
L
T
W
V
G
A
Q
Q
T
T
F
P
Y
D
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.83
30%
-102
- C3 -
2QJY
1
CYB_RHOSH
A:
[241-391]
------------------------------------------
T
---
V
P
F
W
P
Y
F
I
I
K
D
V
F
A
L
A
V
V
L
L
V
F
F
A
---
I
V
G
FMPN
Y
L
-----
G
--
H
P
D
N
Y
-
I
E
A
N
P
L
R
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
-
A
F
T
A
--------------
D
V
W
V
V
Q
I
A
N
F
I
S
F
-----------
G
I
I
D
A
K
F
F
G
V
L
A
M
F
G
-----------------
A
I
L
V
M
A
L
V
P
W
L
D
T
S
P
V
-
R
S
G
R
Y
R
P
M
F
K
I
Y
F
W
L
L
A
A
D
F
V
I
L
T
W
V
G
A
Q
Q
T
T
F
P
Y
D
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68
Fugue
59.40
17%
24
- C1 -
2Y38
8
LAMA5_MOUSE
A:
[8-398]
G
F
S
L
H
P
P
Y
F
N
L
A
E
G
A
R
I
T
A
S
A
T
C
H
P
V
S
N
A
I
D
G
T
E
R
W
W
Q
S
P
P
L
S
---
R
G
L
E
Y
N
E
V
N
V
T
L
D
L
G
Q
V
F
H
V
A
Y
V
L
---
I
K
-----
F
A
-----
N
SP
R
P
D
L
W
-
V
L
E
R
S
T
D
F
G
H
T
Y
Q
P
W
Q
F
F
A
S
S
K
R
D
C
L
E
R
F
G
P
--------------
R
----------
T
L
ERITQDD
D
V
I
C
T
T
E
Y
S
R
I
V
P
-
L
E
-
N
G
-----------------
E
I
V
---
V
S
L
V
N
G
R
P
G
A
-
L
N
F
S
Y
S
P
L
L
R
D
F
T
K
A
T
N
I
R
L
R
F
L
R
T
----
N
T
L
L
G
H
L
M
G
K
A
L
R
D
P
T
V
T
R
R
Y
Y
Y
S
I
K
D
I
S
I
G
G
R
C
V
CHGH
A
D
V
C
D
A
K
D
P
L
D
P
F
R
L
---
Q
CACQHNTCGG
S
---
C
D
R
C
C
P
G
F
N
Q
QPWKPATTDSAN
E
C
Q
S
C
N
C--------
H
--
G
--
H
A
Y
D
C
Y
Y
D
--
P
E
V
D
--
R
R
E
A
SQN
Q
D
N
V
Y
Q
G
G
G
-----
V
C
L
DCQHHTTGINCER
C
L
P
G
F
F
------------------------------------
R
A
P
D
Q
P
L
D
S
-
P
H
V
C
R
P
A
A
A
H
---
5
PsiBlast_PDB
58.10
30%
-105
- C3 -
2QJP
2
CYB_RHOSH
A:
[239-389]
------------------------------------------
T
---
V
P
F
W
P
Y
F
I
I
K
D
V
F
A
L
A
V
V
L
L
V
F
F
A
---
I
V
G
FMPN
Y
L
-----
G
--
H
P
D
N
Y
-
I
E
A
N
P
L
S
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
-
A
F
T
A
--------------
D
V
W
V
V
Q
I
A
N
F
I
S
F
-----------
G
I
I
D
A
K
F
F
G
V
L
A
M
F
G
-----------------
A
I
L
V
M
A
L
V
P
W
L
D
T
S
P
V
-
R
S
G
R
Y
R
P
M
F
K
I
Y
F
W
L
L
A
A
D
F
V
I
L
T
W
V
G
A
Q
Q
T
T
F
P
Y
D
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
55.92
27%
-72
- C3 -
2QJY
1
CYB_RHOSH
A:
[237-387]
--------------------------------------
A
Q
K
D
T
---
V
P
F
W
P
Y
F
I
I
K
D
V
F
A
L
A
V
V
L
L
V
F
F
A
---
I
V
-----
G
F
MPNYL
G
--
H
P
D
N
Y
-
I
E
A
N
P
L
R
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
A
F
T
A
D
V
W
V
V
Q
I
A
N
F
I
S
FGI
I
----------
D
A
-----------
K
F
F
G
V
-
L
A
M
F
G
A
-
I
L
-----------------
V
M
A
---
L
V
P
W
L
D
T
S
P
V
-
R
S
G
R
Y
R
P
M
F
K
I
Y
F
W
L
L
A
A
D
F
V
I
L
T
W
----
V
G
A
Q
Q
T
T
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.96
29%
-184
- C3 -
1Q90
8
PETD_CHLRE
D:
[29-143]
----------------------------------------------
E
P
A
W
P
N
D
L
L
--
Y
M
F
P
V
V
I
L
G
T
F
A
C
V
I
G
L
S
-----
V
L
-----
D
--
P
A
A
M
G
-
E
P
A
N
P
F
A
T
P
L
E
I
L
P
E
W
Y
F
Y
P
V
F
Q
I
L
R
----
V
--------------
V
----------
P
N
-----------
K
L
L
G
V
L
L
M
A
A
V
P
-
A
G
------------------
L
I
---
T
V
P
F
I
E
S
I
N
K
F
Q
N
P
Y
R
R
P
I
A
T
I
L
F
L
L
G
T
L
V
A
V
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
50.45
27%
17
- C4 -
4PWA
1
?
A:
[3-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
K
L
A
L
G
R
E
I
F
L
E
RSE
P
----------
Q
---
C
A
L
C
H
T
L
A
D
A
---------------------------
E
AV
G
--
E
V
G
P
N
L
D
E
--
L
K
P
D
--
A
E
R
V
---
N
T
A
V
T
N
G
I
G
-----
P
---------------
M
P
A
N
E
-------------------------------------
I
L
T
D
E
E
I
E
A
V
A
L
Y
V
S
T
V
A
G
----
56
HHSearch
50.38
16%
10
- C4 -
3MK7
5
?
B:
[49-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
A
L
Q
L
E
G
R
D
L
Y
I
R
---
E
----------
G
---
C
V
G
C
H
S
Q
M
I
R
PF
R
A
E
T
E
R
YGHYSVAGESVYDHPFLWG
S
--
K
--
R
T
G
P
D
L
A
R
VG
G
R
Y
S
--
D
D
W
H
---
R
A
H
L
Y
N
P
R
N
VVPES
K
---------------
M
P
S
Y
P
W
LVENTLDGKD
T
A
K
K
M
S
A
L
R
M
L
GVPYTEEDIAG
A
R
D
S
V
N
G
K
T
E
M
D
A
M
V
A
Y
L
Q
V
L
G
T
----
20
PsiBlast_PDB
50.29
27%
0
- C- -
2D2C
6
PETD_MASLA
B:
[29-143]
----------------------------------------------
E
P
A
W
P
N
D
L
L
Y
V
F
P
V
V
I
M
G
T
F
A
C
I
V
---
A
L
-----
S
V
-----
L
--
D
P
A
M
V
G
E
P
A
N
P
F
A
T
P
L
E
I
L
P
E
W
Y
L
Y
P
V
F
Q
I
L
R
----
S
--------------
L
----------
P
N
-----------
K
L
L
G
V
L
L
M
A
S
V
P
-
L
G
------------------
L
I
---
L
V
P
F
I
E
N
V
N
K
F
Q
N
P
F
R
R
P
V
A
T
T
I
F
L
F
G
T
L
V
T
I
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
50.29
27%
0
- C- -
1VF5
5
PETD_MASLA
B:
[29-143]
----------------------------------------------
E
P
A
W
P
N
D
L
L
Y
V
F
P
V
V
I
M
G
T
F
A
C
I
V
---
A
L
-----
S
V
-----
L
--
D
P
A
M
V
G
E
P
A
N
P
F
A
T
P
L
E
I
L
P
E
W
Y
L
Y
P
V
F
Q
I
L
R
----
S
--------------
L
----------
P
N
-----------
K
L
L
G
V
L
L
M
A
S
V
P
-
L
G
------------------
L
I
---
L
V
P
F
I
E
N
V
N
K
F
Q
N
P
F
R
R
P
V
A
T
T
I
F
L
F
G
T
L
V
T
I
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
49.82
27%
-103
- C3 -
1ZRT
2
CYB_RHOCA
C:
[241-379]
------------------------------------------
T
---
L
P
F
W
P
Y
F
V
I
K
D
L
F
A
L
A
L
V
L
L
G
F
F
A
---
V
V
AYMPN
Y
L
-----
G
--
H
P
D
N
Y
-
V
Q
A
N
P
L
S
T
P
A
H
I
V
P
E
W
Y
F
L
P
F
Y
A
I
L
R
-
A
F
A
A
--------------
D
----------
V
W
-----------
V
V
I
---
L
V
D
G
L
T
-
F
G
IVDAKFFGVIAMFGAIA
V
M
A
---
L
A
P
W
L
D
T
S
K
V
-
R
S
G
A
Y
R
P
K
F
R
M
W
F
W
F
L
V
L
D
F
V
V
L
T
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
HHSearch
49.35
32%
62
- C4 -
1C75
1
CY553_SPOPA
A:
[2-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
E
A
V
V
Q
----
Q
----------
K
---
C
I
S
C
H
G
G
D
L
T
---------------------------
G
--
A
---
S
A
P
A
I
D
K
A
G
A
N
Y
S
--
E
E
E
I
---
L
D
I
I
L
N
G
Q
G
-----
G
---------------
M
P
G
G
--------------------------------------
I
A
K
G
A
E
A
E
A
V
A
A
W
L
A
E
K
K
-----
64
Fugue
48.73
26%
23
- C4 -
4PWA
1
?
A:
[3-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
K
L
A
L
G
R
E
I
F
L
E
---
R
----------
S
EPQ
C
A
L
C
H
T
L
A
D
A
---------------------------
E
--
A
VG
E
V
G
P
N
L
D
E
--
L
K
P
D
--
A
E
R
V
---
N
T
A
V
T
N
G
I
G
-----
P
---------------
M
P
A
-
N
E
------------------------------------
I
L
T
D
E
E
I
E
A
V
A
L
Y
V
S
T
V
A
G
K
AKN
41
HHSearch
47.78
22%
0
- C- -
1PP9
1
CYB_BOVIN
C:
[201-345]
-------------------------
H
E
T
G
S
N
N
P
T
G
I
S
-
S
D
V
D
K
---
I
P
F
H
P
Y
Y
T
I
K
D
I
L
G
A
L
L
L
I
L
A
L
M
L
---
L
V
-----
L
F
APDLL
G
--
D
P
D
N
Y
-
T
P
A
N
P
L
N
T
P
P
H
I
K
P
E
W
Y
F
L
F
A
Y
A
I
L
R
S
I
----------------------------
P
N
-----------
K
-
L
G
G
V
L
A
L
A
F
S
-
I
L
-----------------
I
L
A
---
L
I
P
L
L
H
T
S
K
Q
-
R
S
M
M
F
R
P
L
S
Q
C
L
F
W
A
L
V
A
D
L
L
T
L
T
W
----
I
G
G
Q
P
V
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
47.64
28%
-74
- C3 -
4H0L
12
PETD_MASLA
B:
[29-143]
----------------------------------------------
E
P
A
W
P
N
D
L
L
Y
V
F
P
V
V
I
M
G
T
F
A
C
I
V
---
A
L
-----
S
V
-----
L
--
D
P
A
M
V
G
E
P
A
D
P
F
A
T
P
L
E
I
L
P
E
W
Y
L
Y
P
V
F
Q
I
L
R
----
S
--------------
V
----------
P
N
-----------
K
L
L
G
V
L
L
M
A
S
V
P
-
L
G
------------------
L
I
---
L
V
P
F
I
E
N
V
N
K
F
Q
N
P
F
R
R
P
V
A
T
T
I
F
L
F
G
T
L
V
T
I
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
47.47
29%
-37
- C4 -
1WVE
1
CY4C_PSEPU
C:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
G
S
G
K
N
L
Y
D
----
K
----------
V
---
C
G
H
C
H
K
P
E
V
G
----------------------------------
V
G
P
V
L
E
G
--
R
G
L
P
--
E
A
Y
I
---
K
D
I
V
R
N
G
F
R
-----
A
---------------
M
P
A
F
P
A
S-----------------------------------
Y
V
D
D
E
S
L
T
Q
V
A
E
Y
L
S
S
L
P
A
----
65
Fugue
47.21
34%
48
- C4 -
1C75
1
CY553_SPOPA
A:
[1-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
A
E
A
V
V
Q
Q
---
K
--------------
C
I
S
C
H
G
G
D
L
T
---------------------------
G
--
A
--
S
-
A
P
A
I
D
K
--
A
G
A
N
Y
S
E
E
E
I
---
L
D
I
I
L
N
G
Q
G
-----
G
---------------
M
P
G
G
I
A
------------------------------------
K
G
--
A
E
A
E
A
V
A
A
W
L
A
E
K
K
-----
63
Fugue
47.12
22%
-30
- C3 -
2E74
9
PETD_MASLA
B:
[1-160]
-----------------
M
A
T
L
K
K
-
P
D
L
S
D
P
K
L
R
A
K
L
A
K
G
M
G
H
N
YYG
E
P
A
W
P
N
D
L
L
Y
V
F
P
V
V
I
M
G
T
F
A
C
I
V
---
A
L
-----
S
V
-----
L
--
D
P
A
M
V
G
E
P
A
D
P
F
A
T
P
L
E
I
L
P
E
W
Y
L
Y
P
V
F
Q
I
L
R
----
S
--------------
V
----------
P
N
-----------
K
L
L
G
V
L
L
M
A
S
V
P
-
L
G
-----------------
L
I
L
---
V
P
F
I
E
N
V
N
K
F
-
Q
N
P
F
R
R
P
V
A
T
T
I
F
L
F
G
T
L
V
T
I
W
L
G
I
----
G
A
T
F
P
L
D
K
T
L
T
L
G
L
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
Fugue
46.69
36%
48
- C4 -
1K3G
1
CY553_SPOPA
A:
[1-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
A
E
A
V
V
Q
----
Q
----------
K
---
C
I
S
C
H
G
G
D
L
T
---------------------------
G
--
A
--
S
-
A
P
A
I
D
K
--
A
G
A
N
YS
E
E
E
I
---
L
D
I
I
L
N
G
Q
G
-----
G
---------------
M
P
G
G
I
A
------------------------------------
K
G
--
A
E
A
E
A
V
A
A
W
L
A
E
K
K
-----