@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu23720: (2016-07-07 )
MEKFVEKMLGQALRQYGRNVAIDPLSPYEKQSLKAALQERRNEEPDEDLHAHIEDIIYDYVTNQGLFS
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------.........10......----..20...--.----.---...30........40..--..-....50........--60.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------
M
E
K
F
V
E
K
M
L
G
Q
A
L
R
QYG----RNVAIDP--L----S---P
Y
E
K
Q
S
L
K
A
A
L
Q
E
RRNE--EP-
D
E
D
L
H
A
H
I
E
D
I
I
Y
D
--
Y
VTNQGLFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.79
34%
-167
- C3 -
3GKU
-
?
A:
[152-183]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
N
I
A
Y
K
V
K
R
T
K
----
R
S
V
S
L
E
P
--
M
----
N
---
P
Y
E
R
R
I
I
H
A
A
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
53.25
14%
65
- C3 -
4WZR
1
PUM3_HUMAN
A:
[9-524]
N
Y
D
I
V
V
R
A
K
Q
M
W
E
I
L
R
RKDCD
K
E
K
R
V
K
L
M
S
D
L
Q
K
L
I
QGK
I
K
T
I
A
F
AHDS
T
R
V
I
Q
C
Y
I
Q
Y
GN
E
E
Q
R
K
Q
A
F
E
E
L
RDD
L
V
E
L
S
KAKYS
R
N
I
V
K
K
F
L
M
YGS
K
P
Q
I
A
E
I
I
R
S
F
KGH
V
R
K
M
L
R
H
A
E
A
S
A
I
V
E
Y
A
Y
N
DKAI
L
E
Q
R
N
M
L
T
E
E
L
Y
G
N
T
F
Q
L
Y
K
----
S
A
------------------
D
H
P
T
L
D
K
V
L
E
L
Q
--
P
--
E
K
-
L
E
L
I
M
D
E
M
K
Q
I
L
T
P
--
M
A
Q
K
E
A
V
I
K
H
S
L
V
H
K
V
F
L
D
F
F
T
Y
AP
P
K
L
R
S
E
M
I
E
A
I
R
EAVVYLAHT
H
D
G
A
R
V
A
M
H
C
L
W
H
GT
P
K
D
R
K
V
I
V
K
T
M
KTY
V
E
K
V
A
N
GQY
S
H
L
V
L
L
A
A
F
D
CIDD
T
K
L
V
K
Q
I
I
I
S
E
I
I
S
S
L
P
S
I
V
N
D
K
Y
G
R
K
V
L
L
Y
L
L
SPRDPAHTV
R
E
I
I
E
V
L
Q
K
GDGNAHSKKD
T
E
V
R
R
R
E
L
L
E
S
I
S
P
A
L
L
S
Y
L
Q
E
H
A
Q
E
V
V
L
DKSA
C
V
L
V
S
D
I
L
G
SATGDV
Q
P
T
M
N
A
I
A
S
L
A
ATGLHPGGKDGELHIAEH
P
A
G
H
L
V
L
K
W
L
I
E
Q
D
K
K
M
K
E
N
GREGC
F
A
K
T
L
V
E
H
V
G
M
K
N
L
K
S
W
A
S
V
N
R
G
A
I
I
L
S
S
L
L
Q
SCD
L
E
V
A
N
K
V
K
A
A
L
KSLIPTLES
K
G
I
E
I
L
L
E
K
L
14
HHSearch
53.09
23%
-61
- C3 -
4LH6
1
DNLJ_ENTFA
A:
[18-57]
---------------------------------------------------------------------------------------------------------------------------------------------
L
R
K
Q
L
N
Q
Y
S
H
E
Y
Y
-----
V
K
D
Q
P
S
--
V
----
E
---
D
Y
V
Y
D
R
L
Y
K
E
L
V
D
I
E
T
E
--
F
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.99
20%
-61
- C3 -
3JSL
1
DNLJ_STAAU
A:
[11-50]
---------------------------------------------------------------------------------------------------------------------------------------------
L
H
D
L
L
N
Q
Y
S
Y
E
Y
Y
-----
V
E
D
N
P
S
--
V
----
P
---
D
S
E
Y
D
K
L
L
H
E
L
I
K
I
E
E
E
--
H
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
51.89
20%
-99
- C3 -
1DGS
-
DNLJ_THEFI
A:
[13-52]
---------------------------------------------------------------------------------------------------------------------------------------------
L
R
D
L
I
R
Y
H
N
Y
R
Y
Y
-----
V
L
A
D
P
E
--
I
----
S
---
D
A
E
Y
D
R
L
L
R
E
L
K
E
L
E
E
R
--
F
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
50.78
18%
-98
- C3 -
4GLX
-
DNLJ_ECOLI
A:
[11-61]
---------------------------------------------------------------------------------------------------------------------------------------------
L
R
T
T
L
R
H
H
E
Y
L
Y
H
-----
V
M
D
A
P
E
--
I
----
P
---
D
A
E
Y
D
R
L
M
R
E
L
R
E
L
E
T
K
--
H
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
50.14
20%
-43
- C3 -
4TNO
2
CAS2_PYRFU
A:
[17-55]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
K
K
F
L
R
M
H
L
N
W
V
Q
N
S
V
F
E
G
E
--
V
----
T
---
L
A
E
F
E
R
I
K
E
G
L
K
K
I
I
D
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
50.07
14%
47
- C3 -
2FOK
-
T2F1_PLAOK
A:
[287-386]
-----------------------------------------------------------------------------------------------------------------------------------V
P
K
R
V
Y
W
E
M
L
A
T
N
L
T
D
K
E
Y
V
R
T
R
----
R
A
L
I
L
E
I
--
L
----
I
KA
G
S
L
K
I
E
Q
I
Q
D
N
L
K
K
L
G
F
D
--
E
V
-
I
E
T
I
E
N
D
I
K
G
L
I
N
T
G
I
F
I
E
I
K
G
R
F
Y
Q
L
K
D
HILQFVIPNRLV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
49.44
14%
-74
- C3 -
1ZAU
-
DNLJ_MYCTU
A:
[19-60]
--------------------------------------------------------------------------------------------------------------------------------------------
A
L
A
E
E
V
R
E
H
Q
F
R
Y
Y
-----
V
R
D
A
P
I
--
I
----
S
---
D
A
E
F
D
E
L
L
R
R
L
E
A
L
E
E
Q
--
H
P
-
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.99
15%
-161
- C3 -
2LXE
-
SUVR4_ARATH
A:
[63-102]
------------------------------------------------------------------------------------------------------------------------------------------
D
E
K
T
M
P
V
L
M
K
L
L
E
E
A
G
------
G
N
W
S
Y
--
I
----
K
---
L
D
N
Y
T
A
L
V
D
A
I
Y
S
V
E
D
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
47.68
14%
22
- C3 -
2RBG
-
?
A:
[3-126]
---------------------------------------------------------------------------------------------------------------------------YK
N
I
L
T
L
I
S
V
N
NDN
F
E
N
Y
F
R
K
I
F
L
D
V
R
S
S
G
S
----
K
K
T
T
I
N
V
--
F
----
T
---
E
I
Q
Y
Q
E
L
V
T
L
I
R
E
A
L
L
E
--
N
I
-
D
----
I
G
Y
E
L
F
L
W
K
--
K
N
E
V
D
I
F
L
K
N
L
E
K
SEVD
G
L
L
V
Y
C
D
DEN
K
V
F
M
S
K
I
V
D
N
LP
T
A
I
K
R
N
LIKDFCRKLS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
45.72
8%
64
- C3 -
3BM3
2
?
A:
[2-260]
------------------------------------------------------------------------VRNLVIDITKKPTQNIPP
T
N
E
I
I
E
E
A
I
T
E
L
N
V
D
E
L
L
D
R
LFEKDESGEVIT
P
S
R
I
A
K
M
L
E
E
K
A
F
E
I
Y
K
E
Y
E
K
Q
V
R
E
A
Y
L
S
A
------------------------
G
Y
S
R
E
K
L
E
Q
S
F
Q
Q
A
R
F
S
--
R
G
-
G
K
A
F
E
I
I
F
T
K
L
L
N
K
--
F
G
I
R
Y
E
H
D
R
VIKIYDYIT
E
G
E
K
P
AFIIPS
V
R
T
F
L
N
DPSS
A
I
L
I
T
V
K
RKVRER
W
R
E
A
V
G
E
A
Q
I
L
R
N
K
FGDE
I
N
F
W
F
V
G
FDEEFT
I
Y
S
A
I
A
M
L
D
N
GID
R
V
Y
V
IDGR
Y
D
S
L
I
E
E
I
K
R
ISDPNFN
E
D
K
Y
I
Q
K
I
R
R
FSD
I
F
D
D
I
I
Q
F
L
N
K
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
44.88
15%
-95
- C3 -
1B04
-
DNLJ_GEOSE
A:
[13-54]
---------------------------------------------------------------------------------------------------------------------------------------------
L
R
E
L
L
N
R
Y
G
Y
E
Y
Y
-----
V
L
D
R
P
S
--
V
----
P
---
D
A
E
Y
D
R
L
M
Q
E
L
I
A
I
E
E
Q
--
Y
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
44.27
15%
-52
- C3 -
3SGI
-
DNLJ_MYCTU
A:
[20-60]
---------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
E
V
R
E
H
Q
F
R
Y
Y
-----
V
R
D
A
P
I
--
I
----
S
---
D
A
E
F
D
E
L
L
R
R
L
E
A
L
E
E
Q
--
H
P
-
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
42.71
32%
107
- C3 -
2OGF
2
MPTD_METJA
A:
[42-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
V
----
S
---
K
Y
N
K
E
S
L
E
R
A
I
E
E
A
M
K
N
--
Q
P
C
V
Y
D
I
K
V
K
I
R
N
V
G
E
K
--
Y
V
S
L
D
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
42.42
24%
71
- C3 -
3DHW
-
METI_ECOLI
A:
[6-208]
--------------------------------------------------------------------MWLLV
R
G
V
W
E
T
L
A
M
T
F
V
S
G
F
FGFVIGLPVGVLLYVTRPGQIIANAKLY
R
T
V
S
A
I
V
N
I
F
R
S
IPF
I
I
L
L
V
W
M
I
P
F
T
R
V
I
V
G
T
S
I
---
G
----
L
Q
A
A
I
V
P
--
L
T
V
G
A
A
---
P
F
I
A
R
M
V
E
N
A
L
L
E
I
P
T
G
LI
E
A
-
S
R
A
M
G
A
T
P
M
Q
I
V
R
K
--
V
L
L
P
E
A
L
P
G
L
V
N
A
A
T
I
T
L
I
T
L
V
G
Y
S
A
M
G
GAVGAGG
L
G
Q
I
G
Y
Q
Y
GYIGYNAT
V
M
N
T
V
L
V
L
L
V
I
L
V
Y
L
I
Q
F
A
G
D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
42.05
16%
78
- C3 -
2TMV
2
CAPSD_TMV
P:
[1-154]
--------------------------------------------------------------SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAV
L
D
P
L
V
T
A
L
L
G
A
F
D
T
R
N
R
----
I
I
E
V
E
N
Q
--
A
----
N
---
P
T
T
A
E
T
L
D
A
---
T
R
R
V
D
--
D
A
-
T
V
A
I
R
S
A
I
N
N
L
I
V
E
--
L
I
R
G
T
G
S
Y
N
RSSFESSSGLVWTS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
41.48
21%
-120
- C3 -
3X38
1
SLD7_YEAST
A:
[8-41]
-----------------------------------------------------------------------------------------------------------------------------------------
F
N
E
T
L
S
K
L
I
L
G
G
L
R
L
R
G
----
I
-----
S
--
N
----
S
---
I
T
D
Y
Q
K
L
Y
K
I
T
F
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
41.22
19%
51
- C3 -
1HF0
2
PO2F1_HUMAN
A:
[6-158]
--------------------------------------------------------------------------------LEEL
E
Q
F
A
K
T
F
K
Q
R
R
I
K
L
GFT
Q
G
D
V
G
L
A
M
G
K
L
Y
G
N
D
F
S
Q
T
T
I
S
R
F
E
A
LNLS
F
K
N
M
S
K
L
K
P
L
L
E
K
W
L
N
D
A
E
R
K
K
R
---------
T
S
--
I
----
E
---
T
N
I
R
V
A
L
E
K
S
F
L
E
--
N
Q
--
K
P
T
S
E
E
I
T
M
I
A
D
Q
L
N
M
E
--
K
E
V
I
R
V
W
F
S
N
R
R
Q
K
E
K
RI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
39.52
16%
-63
- C3 -
2A7O
-
A:
[24-63]
-------------------------------------------------------------------------------------------------------------------------------------------
K
E
M
S
Q
F
I
V
Q
C
L
N
P
Y
R
-----
K
P
D
C
K
V
GR
I
T---
T
---
T
E
D
F
K
H
L
A
R
K
L
T
H
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------