@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu23950: (2016-07-07 )
MFKIGYRTIKTALGTALAIYISQLLHLQNFASAGIITILCIQITQKRSLQASWARFSACCLAIAFSYLFFELIGYHPFVIGALLLIFIPITVLLKINEGIVTSSVIILHLYMSGGITPTFIWNEVQLITVGIGVALLMNLYMPSLDRKLIAYRKKIEDNFAVIFAEIERYLLTGEQDWSGKEIPETHQLITEAKNLAYRDVQNHILRYENLHYHYFKMREKQFEIIERLLPKVTSISITVDQGKMIAEFIHDLREAIHPGNTAYKFLKRLADMRKEFEEMPLPATREEFEARAALFHLLGEMEQYLVIKSYFKGIKAQKSLG
Atome Classification :
(20 SA)
--------------------.......-------..10........20-------.........30........40........50..--..----------------..--------..60........70....-....---------80-------........--.90...--..-...100.-----....---------------------..110......--.120--------....---.....130.......140.......150.......160........-------170..-..-...-180.......190.......200..----------------------------...----------------..210.......220.......230.......240...---....250------........260.--------......270.......280--.......-..290.......300........310.......320--------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------MFK
I
G
Y
R
-------
T
I
K
T
A
L
G
T
A
L
A
I
Y
--------
I
S
Q
L
L
H
L
Q
N
FASA
G
I
I
T
I
L
C
I
Q
ITQKRS
L
Q
A
S
W
--
A
R
----------------
F
S
--------
A
C
C
L
A
I
A
F
S
Y
L
F
F
E
L
IGY-
H
P
F
V
---------
I
--------
G
A
L
L
L
I
F
I
--
P
I
T
V
L
L
--KI-NEGIVT
S
-----
S
V
I
I
---------------------
L
H
L
Y
MSGGI
T
P
--
T
F
----------
I
WN
E
---
V
Q
L
I
T
V
G
I
G
V
A
L
L
M
N
L
YMPSL
D
R
K
L
I
A
Y
R
K
K
IEDN
F
-
A
V
I
F
A
E
I
E
R
-------
Y
L
LTG-EQ-DWS-GKEI
P
E
T
H
Q
L
I
T
E
A
K
N
L
A
Y
R
D
V
Q
N
H
----------------------------
I
L
R
----------------YENL
H
Y
H
Y
F
K
M
R
E
K
Q
F
E
I
I
E
R
L
L
PKV
T
S
I
S
I
T
VDQ
G
K
M
---
I
A
E
F
I
H
-------
D
L
R
E
AIHPG
N
T
A
--------
Y
K
F
L
K
R
L
A
D
M
R
K
E
F
E
EM----PLPA
T
R
E
-
E
F
E
A
R
A
A
L
F
H
L
L
G
E
-
M
E
Q
Y
L
V
I
K
S
Y
F
K
G
I
K
AQKSLG--------------------------
8
HHSearch
73.66
23%
-54
- C3 -
3KMI
-
?
A:
[6-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
H
K
I
H
E
V
Q
K
K
L
Q
E
E
V
-
S
I
V
L
I
D
I
A
D
-------
I
I
V
N
P
-
K
K
E
N
G
Y
-
S
R
D
L
Y
T
L
N
S
L
I
D
S
S
I
S
E
T
Y
D
N
I
N
N
T
----------------------------
L
L
S
----------------
D
T
R
F
F
L
E
H
M
D
I
I
K
S
Q
R
D
I
L
E
N
L
Y
S
Y
V
S
Q
L
N
S
T
P
P
Q
A
H
I
---
L
S
A
F
I
H
-------
K
I
G
Y
T
E
F
E
A
E
T
G
--------
N
L
L
L
E
E
L
K
R
L
M
I
S
M
K
N
Q
----
P
L
P
V
D
R
T
-
E
F
E
N
R
A
I
L
F
L
C
L
T
E
-
L
K
Q
F
L
V
N
R
K
H
-------------------------------------
1
PsiBlast_PDB
72.00
22%
-52
- C3 -
3KMI
-
?
A:
[6-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
H
K
I
H
E
V
Q
K
K
L
Q
E
E
V
-
S
I
V
L
I
D
I
A
D
-------
I
I
V
N
P
-
K
K
-
E
N
G
Y
S
R
D
L
Y
T
L
N
S
L
I
D
S
S
I
S
E
T
Y
D
N
I
N
N
T
----------------------------
L
L
S
----------------
D
T
R
F
F
L
E
H
M
D
I
I
K
S
Q
R
D
I
L
E
N
L
Y
S
Y
V
S
Q
L
N
S
T
P
P
Q
A
H
I
---
L
S
A
F
I
H
-------
K
I
G
Y
T
E
F
E
A
E
T
G
--------
N
L
L
L
E
E
L
K
R
L
M
I
S
M
K
N
Q
----
P
L
P
V
D
R
T
-
E
F
E
N
R
A
I
L
F
L
C
L
T
E
-
L
K
Q
F
L
V
N
R
K
H
-------------------------------------
25
Fugue
67.49
13%
-41
- C- -
3PT5
-
?
A:
[4-326]
--------------------
I
I
S
P
D
Y
Y
-------
Y
V
L
T
V
A
G
Q
S
N
A
M
A
--------
Y
G
E
G
L
P
L
P
D
R
E
D
A
P
H
P
R
I
K
Q
L
A
R
F
A
H
T
H
P
G
G
P
S
--
C
H
----------------
F
N
--------
D
I
I
P
L
T
H
C
P
H
D
V
Q
D
M
Q
S
Y
H
H
P
L
A
TNHQTQYGT
V
--------
G
Q
A
L
H
I
A
R
--
K
L
L
P
F
I
--
P
D
-
N
A
G
I
L
I
V
-----
P
C
C
R
---------------------
G
G
S
A
F
T
A
G
S
E
G
--
T
Y
----------
S
E
R
H
GAS
H
D
A
C
R
W
G
T
D
----
T
P
L
Y
Q
D
L
V
S
R
T
R
A
A
L
V
K
N
P
Q
N
K
F
L
G
V
C
W
M
Q
G
E
F
-------
D
L
M
T
S
D
Y
A
-
S
H
P
-
Q
H
F
N
H
M
V
E
A
F
R
R
D
L
K
Q
Y
H
S
Q
L
N
D
A
P
----------------------------
W
F
C
----------------
G
D
T
T
W
Y
W
K
E
N
F
P
H
A
Y
E
A
I
Y
G
N
Y
Q
N
N
I
L
A
N
I
I
F
V
D
F
Q
Q
---------
Q
-------
G
A
R
G
L
T
N
A
P
D
E
D
--------
P
D
D
L
S
T
G
Y
Y
G
S
A
Y
R
S
P
E
----
N
W
T
T
A
L
R
-
S
S
-------
H
F
S
S
A
-
A
R
R
G
I
I
S
D
R
F
V
E
A
I
L
Q
F
W
R
E
R
--------------------------
22
Fugue
64.73
16%
0
- C- -
4TNW
-
?
A:
[1-342]
------------S
D
S
K
I
L
A
H
L
F
T
S
G
Y
D
F------
R
V
R
P
P
T
D
N
G
G
P
V
V
--------
V
S
V
N
M
L
L
R
T
I
S
K
---
I
D
V
V
N
M
E
Y
S
A
Q
L
T
L
R
E
S
W
I
D
K
R
----------------
L
S
YGVKGDGQ
P
D
F
V
I
L
T
V
G
H
Q
I
W
M
P
D
T
F
-
F
P
N
E
---------
K
--------
Q
A
Y
K
H
T
I
D
--
K
P
N
V
L
I
--
R
I
H
N
D
G
T
V
L
Y
-----
S
V
R
I
S
L
V
L
S
C
P
M
Y
LQYYPM
D
V
Q
Q
C
S
I
D
L
A
S
Y
A
Y
T
T
K
D
I
E
Y
----------
L
W
K
E
---
H
S
P
L
Q
L
K
V
G
--
L
S
S
S
L
P
S
F
Q
L
T
N
T
S
T
T
Y
C
T
S
V
T
N
T
G
-
I
Y
S
C
L
R
T
T
I
-------
Q
L
K
R
E
-
F
S
-
F
Y
L
-
L
Q
L
Y
I
P
S
C
M
L
V
I
V
S
W
V
S
F
W
F
D
R
T
A
I
----------------------------
P
A
R
----------------
V
T
L
G
V
T
T
L
L
T
M
T
A
Q
S
A
G
I
N
S
Q
L
P
P
--------
V
S
Y
I
K
A
---
I
D
V
W
I
G
-------
A
C
M
T
F
I
F
C
A
L
L
E
--------
F
A
L
V
N
H
I
A
N
A
G
T
--
T
E
W
----
N
D
I
S
K
R
V
-
D
L
I
S
R
A
L
F
P
V
L
F
F
V
-
F
N
I
L
Y
W
S
R
F
G
H
H
H
----------------------------------
24
Fugue
51.39
11%
-49
- C2 -
3X27
2
?
A:
[24-332]
--------------------
Q
I
E
I
E
W
V
-------
Q
----
P
G
I
T
V
T
A
D
--------
L
S
W
--------------------------------
E
R
----------------
N
P
--------
E
L
A
E
L
L
W
T
G
L
L
P
Y
N
S
L
Q
N
-
H
A
L
V
---------
S
--------
G
N
H
L
Y
H
L
I
--
A
D
P
R
L
V
YT
E
A
-
R
Y
K
E
D
R
T
-----
K
S
P
D
---------------------
G
T
V
F
L
S
Q
L
Q
H
L
--
A
V
----------
K
Y
G
P
---
L
T
E
Y
L
P
A
A
P
V
G
S
V
V
P
E
D
I
D
A
L
R
E
A
G
R
A
C
W
K
A
A
W
E
T
K
-
Q
P
I
E
V
R
V
R
R
KGEAVT
D
F
A
L
P
R
-
T
P
-
P
V
D
-
H
P
G
V
Q
K
L
V
E
E
I
Q
D
E
T
E
R
V
W
I
T
P
P
A
E
----------------------------
I
V
D
M
H
Q
GRIASRAGSYDQY
F
S
T
L
V
F
L
N
G
E
V
R
P
L
G
Y
C
A
L
N
G
L
L
K
I
C
R
T
T
D
L
T
L
N
D
L
K
R
---
I
T
P
T
F
I
-------
K
T
P
A
E
F
L
G
Y
T
G
L
--------
D
T
L
W
R
F
T
Q
Q
V
L
T
L
L
P
D
V
----
E
---
T
R
E
-
Q
Y
F
A
L
V
N
A
L
A
L
Y
A
N
M
L
N
T
W
N
L
H
F
F
P
W
Q
H
G
T
D
Y
R
Y
----------------------------
7
PsiBlast_PDB
46.12
29%
17
- C3 -
1RVY
-
GLYC_RABIT
A:
[405-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
K
L
A
G
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
5
PsiBlast_PDB
45.65
29%
25
- C3 -
1RV4
-
GLYC_RABIT
A:
[405-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
K
L
A
G
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
2
PsiBlast_PDB
45.08
29%
3
- C3 -
1CJ0
-
GLYC_RABIT
A:
[392-466]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
K
L
A
G
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
19
Fugue
44.91
12%
19
* C2 *
4DVZ
-
CAGA_HELPY
A:
[308-829]
L
M
G
S
H
N
GK
V
S
L
L
YAGDKHD
W
N
A
T
V
G
Y
K
DNVAT
L
I
N
V
H
M
K
N
G
S
G
L
V
I
A
G
G
EKGINN
P
S
F
Y
L
Y
K
E
D
Q
L
T
G
S
Q
R
A
L
S
Q
E
E
I
R
N
K
V
D
F
M
E
F
L
--
A
Q
N
NTKLDNLS
E
K
E
K
E
K
F
Q
N
--------
E
I
E
D
F
Q
K
D
S
K
A
Y
L
D
A
L
G
N
-
D
R
I
A
---------
F
V
S
KKDTKH
S
A
L
I
T
E
F
N
NG
D
L
S
Y
T
L
--
K
D
-
Y
E
K
N
V
T
L
Q
G
S
LK
H
D
G
V
---------------------
M
F
V
D
Y
S
F
N
K
V
A
--
V
F
NLPDLNNLAI
T
S
F
V
---
R
R
N
L
E
N
K
L
T
A
K
G
L
S
L
Q
E
A
N
K
L
I
K
D
F
L
S
S
N
K
E
L
A
G
K
A
-
L
N
F
N
K
A
V
A
E
-------
A
K
S
T
G
-
N
Y
-
D
E
V
-
K
K
A
Q
K
D
L
E
K
S
L
R
K
R
E
H
L
E
K
E
V
E
K
K
L
E
S
K
SGNKK
A
Q
A
N
S
Q
K
D
E
I
F
A
L
I
N
K
E
A
N
R
D
A
R
----------------
A
I
A
Y
T
Q
N
L
K
G
I
K
R
E
L
S
D
K
L
E
K
I
S
K
D
L
K
D
F
S
K
S
F
D
E
F
K
N
FSK
A
E
E
T
L
K
-------
A
L
K
G
S
V
K
D
L
G
I
N
--------
P
E
W
I
S
K
V
E
N
L
N
A
A
L
N
E
F
K
N
GD
F
S
K
V
T
Q
A
-
K
S
D
L
E
N
S
V
K
D
V
I
I
N
-
Q
K
V
T
D
K
V
D
N
L
N
Q
A
V
S
V
A
K
A
M
G
DF
S
R
V
E
Q
V
L
A
D
L
K
N
F
S
K
E
Q
L
A
Q
Q
A
Q
K
4
PsiBlast_PDB
43.79
29%
28
- C3 -
1RV3
-
GLYC_RABIT
A:
[405-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
K
L
A
G
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
6
PsiBlast_PDB
43.03
29%
20
- C3 -
1RVU
-
GLYC_RABIT
A:
[405-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
K
L
A
G
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
17
HHSearch
39.36
13%
-79
- C3 -
4DRI
1
B:
[11-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
H
E
G
L
E
-------
E
A
S
R
L
Y
F
G
E
R
N
V
--------
K
G
M
F
E
V
L
E
P
L
H
A
M
M
E
R
------
G
P
Q
T
L
K
---------------------------------------------------------------
21
Fugue
38.80
14%
-105
- C1 -
4WIK
-
SFPQ_HUMAN
A:
[370-597]
--------------------------------------------------------
A
A
A
L
S
V
R
N
L
S
P
----------
Y
V
S
N
E
L
L
E
E
A
F
--
S
Q
----------------
F
------------------------------------------------------------------------------------------------------------------
G
P
I
E
R
--
A
V
----------
V
I
V
D
---
D
R
G
R
S
T
G
K
G
I
V
E
F
-----
A
S
K
P
A
A
R
K
A
F
E
R
C
S
E
G
V
F
-
L
L
T
T
T
P
R
P
V
-------
I
V
E
P
L
-
E
Q
-
L
D
D
-
E
D
G
L
P
E
K
L
A
Q
----
K
N
P
M
Y
Q
K
E
R
E
T
----------------------------
P
P
R
----------------
F
A
Q
H
G
T
F
E
Y
E
Y
S
Q
R
W
K
S
L
D
E
M
E
K
Q
Q
R
E
Q
V
E
K
N
M
K
D
A
K
D
---
K
L
E
S
E
M
-------
E
D
A
Y
H
E
H
Q
A
N
L
L
--------
R
Q
D
L
M
R
R
Q
E
E
L
R
R
M
E
E
L
----
H
N
Q
E
M
Q
K
-
R
K
E
M
Q
L
R
Q
E
E
E
R
R
R
-
R
E
E
E
M
M
I
R
Q
R
E
M
E
E
Q
M
R
R
Q
R
E
E
S
Y-----------------------
3
PsiBlast_PDB
38.76
29%
-25
- C3 -
1LS3
-
GLYC_RABIT
B:
[405-479]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
L
T
S
R
G
L
L
E
K
D
F
Q
K
---
V
A
H
F
I
H
R
G
I
E
L
T
V
Q
I
Q
D
D
T
G
P
R
A
T
L
--------
K
E
F
K
E
----
D
E
K
H
--
Q
R
----
A
V
R
A
L
R
Q
-
E
V
E
S
F
A
A
L
F
P
L
P
G
-------------------------------------------------
14
HHSearch
33.33
16%
43
- C3 -
4GMO
-
?
A:
[595-675]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
E
---
I
V
E
A
L
N
-------
Q
L
F
D
I
Y
G
D
E
E
L
A
CDKEVFWK
D
G
F
L
K
H
L
E
E
F
L
P
K
M
R
T
L
----
T
K
G
I
D
K
R
T
Q
P
E
L
R
T
R
A
D
E
A
L
L
N
-
L
G
R
F
V
Q
Y
K
K
K
H
A
P
----------------------------------
15
HHSearch
30.18
11%
-179
* C3 *
3CI9
-
HSBP1_HUMAN
A:
[9-35]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
D
L
T
S
V
V
Q
T
L
L
Q
Q
M
-
Q
D
K
F
Q
T
I
S
D
-------
Q
I
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
27.24
20%
-40
- C3 -
2CLY
-
AT5F1_BOVIN
A:
[169-183]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
E
H
M
---
I
N
W
V
E
K
-------
R
V
V
Q
-----------------------------------------------------------------------------------------------------------
13
HHSearch
24.68
8%
2
- C3 -
2CAZ
-
VPS28_YEAST
B:
[30-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
K
D
K
E
-
V
I
E
T
L
S
E
I
Y
S
I
V
I
T
-
L
D
H
V
E
K
-----------------------------------------
16
HHSearch
20.90
15%
-118
- C3 -
2L3Y
-
IL6_MOUSE
A:
[160-185]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
-
E
W
L
R
T
K
T
I
Q
F
I
L
K
S
-
L
E
E
F
L
K
V
T
L
R
-------------------------------------
10
HHSearch
20.79
8%
70
- C3 -
2F6M
1
VPS28_YEAST
B:
[21-46]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
K
D
K
E
-
V
I
E
T
L
S
E
I
Y
S
I
V
I
T
-
L
D
H
V
E
K
-----------------------------------------