@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu24230: (2016-07-08 )
MPDNIRKAVGLILLVSLLSVGLCKPLKEYLLIPTQMRVFETQTQAIETSLSVNAQTSESSEAFTVKKDPHEIKVTGKKSGESELVYDLAGFPIKKTKVHVLPDLKVIPGGQSIGVKLHSVGVLVVGFHQINTSEGKKSPGETAGIEAGDIIIEMNGQKIEKMNDVAPFIQKAGKTGESLDLLIKRDKQKIKTKLIPEKDEGEGKYRIGLYIRDSAAGIGTMTFYEPKTKKYGALGHVISDMDTKKPIVVENGEIVKSTVTSIEKGTGGNPGEKLARFSSERKTIGDINRNSPFGIFGTLHQPIQNNISDQALPVAFSTEVKKGPAEILTVIDDDKVEKFDIEIVSTTPQKFPATKGMVLKITDPRLLKETGGIVQGMSGSPIIQNGKVIGAVTHVFVNDPTSGYGVHIEWMLSEAGIDIYGKEKAS
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.........180.......190...-------....200.......210.......220.......230.......240.......250---.........260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MP
D
N
I
R
K
A
V
G
L
I
L
L
V
S
L
L
S
V
G
L
C
K
P
L
K
E
YLLIPTQ
M
R
V
F
ETQ
T
Q
A
I
E
T
S
L
S
V
N
AQTSESS
E
A
F
T
VKKDP
H
E
I
K
V
TGKKSGES
E
L
V
Y
DLAGFPIK
K
T
K
V
H
VLPD
L
K
VIPGG
Q
S
I
G
V
K
L
H
S
V
G
V
L
V
V
G
F
H
Q
INTSEGKKSPGETAGIEA
G
D
I
I
I
EMNG
Q
K
I
E
K
M
N
D
V
A
P
F
I
Q
--
K
AGKTG
E
S
L
D
L
L
I
K
R
D
K
Q
K
I
K
T
KLI-------PEKDEGE
G
K
Y
R
I
G
L
Y
I
RDSAAGIG
T
M
T
F
YEPKTKKYG
A
L
G
H
V
I
SDMDTKK
P
I
V
VE-----N
G
E
I
V
K
S
T
V
T
S
I
EKGTGGN
P
G
E
K
L
A
R
F
S
SERKTIGDINRNSPFG
I
F
G
T
L
H
Q
P
I
Q
NNISDQAL
P
V
A
F
STEVKKGP
A
E
I
L
T
V
IDDDK
V
E
K
F
D
I
E
I
VSTTPQKFPATK
G
M
V
L
KITD
P
R
L
L
K
ETGGIVQGMSGS
P
I
IQNG
K
V
I
G
A
V
T
H
V
F
VNDPTSG
Y
G
V
H
I
E
W
M
LSEAGI
D
I
YGKEKAS
45
HHSearch
68.19
37%
-124
* C3 *
3WKM
-
Y1964_AQUAE
A:
[207-290]
-----------------------------------------------------------------------------------------------------------------------
V
K
P
V
V
G
G
V
K
K
-------
G
S
P
A
D
Q
V
G
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
L
V
E
E
V
R
--
K
S
Q
--
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
-------
P
A
K
D
P
K
T
G
T
Y
F
I
G
L
F
P
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
71
Fugue
60.19
18%
-38
- C2 -
4Q4D
5
VIP2_HUMAN
A:
[7-323]
-----
Q
I
V
V
G
I
C
S
M
A
K
K
S
K
S
K
P
M
K
E
I
L
E
R
I
S
L
F
K
Y
I
T
V
V
V
F
E
E
E
V
I
L
N
E
P
V
E
N
W
P
L
C
D
C
L
I
S
F
H
S
K
G
F
P
L
D
K
A
V
A
Y
A
K
L
R
N
P
F
V
I
N
D
L
-------------
N
M
Q
Y
L
I
Q
D
R
R
E
V
Y
S
I
L
Q
A
E
G
I
L
L
P
R
Y
A
I
L
N
R
D
--
P
N
N
P
K
E
C
N
L
I
E
G
E
D
-
H
V
E
V
N
G
E
V
F
Q
K
-----
P
F
V
E
--
K
P
----------------------
V
-------
S
A
E
D
-----
H
N
V
Y
I
Y
Y
P
T
S
A
G
G
-
G
S
Q
R
L
F
R
-
K
I
G
S
R
S
S
V
Y
S
P
E
S
N
V
R
K
T
G
S
Y
I
Y
E
E
FMPT
D
G
T
D
V
K
V
Y
T
V
--------
G
P
D
Y
A
H
A
E
A
R
K
S
P
A
L
D
G
K
V
E
R
D
S
E
G
--------------
K
E
V
R
Y
P
V
I
L
N
A
R
E
K
L
I
A
W
K
V
C
L
A
F
K
Q
-
T
V
C
G
F
D
L
L
R
A
N
G
--------
Q
S
Y
V
C
D
V
N
G
F
S
F
V
K
N
S
-----------
M
K
Y
Y
D
D
C
A
K
I
L
G
N
I
V
M
R
E
L
A
P
Q
F
--
H
I
P
W
S
---------------
2
PsiBlast_PDB
60.08
38%
-120
- C3 -
3WKM
-
Y1964_AQUAE
A:
[216-288]
---------------------------------------------------------------------------------------------------------------------------------------
K
G
S
P
A
D
Q
V
G
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
L
V
E
E
V
R
--
K
S
--
Q
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
-------
P
A
K
D
P
K
T
G
T
Y
F
I
G
L
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.88
38%
-117
- C3 -
3WKL
-
Y1964_AQUAE
A:
[216-288]
---------------------------------------------------------------------------------------------------------------------------------------
K
G
S
P
A
D
Q
V
G
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
L
V
E
E
V
R
--
K
S
--
Q
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
-------
P
A
K
D
P
K
T
G
T
Y
F
I
G
L
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
57.94
26%
-93
- C3 -
3PV5
-
?
A:
[254-361]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
A
M
G
Y
P
E
D
F
Q
G
A
L
V
---
S
Q
V
N
P
N
----
S
P
A
E
L
A
G
L
K
A
G
D
I
I
T
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
--
L
L
-
R
V
G
S
T
V
K
I
I
V
E
R
D
N
K
P
L
T
L
S
A
V
V
T
D
I
K
S
H
E
Q
K
L
Q
S
N
N
P
F
L
Y
G
L
A
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.81
26%
-95
- C3 -
3PV2
-
?
A:
[254-361]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
A
M
G
Y
P
E
D
F
Q
G
A
L
V
---
S
Q
V
N
P
N
----
S
P
A
E
L
A
G
L
K
A
G
D
I
I
T
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
--
L
L
-
R
V
G
S
T
V
K
I
I
V
E
R
D
N
K
P
L
T
L
S
A
V
V
T
D
I
K
S
H
E
Q
K
L
Q
S
N
N
P
F
L
Y
G
L
A
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.75
30%
-131
- C3 -
3PV4
1
?
A:
[266-344]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
A
M
G
Y
P
E
D
F
Q
G
A
L
V
---
S
Q
V
N
P
N
----
S
P
A
E
L
A
G
L
K
A
G
D
I
I
T
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
--
L
L
-
R
V
G
S
T
V
K
I
I
V
E
R
D
N
K
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
68
Fugue
54.58
15%
-153
- C3 -
2F5Y
2
RGS3_HUMAN
A:
[2-83]
--------------------------------------------------------------------------------------------------
M
R
Y
R
Q
I
T
I
P
R
G
K
D
G
F
G
F
T
I
C
C
D
S
P
V
R
V
Q
A
V
D
------
S
G
G
P
A
E
R
A
G
L
Q
Q
L
D
T
V
L
Q
L
N
E
R
P
V
E
H
W
K
-
C
V
E
L
A
H
--
E
I
R
S
C
P
S
E
I
I
L
L
V
W
R
M
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
54.55
32%
-100
- C3 -
3ID2
3
RSEP_ECOLI
A:
[14-78]
-----------------------------------------------------------------------------------------------------------------------------------------
S
A
A
S
K
A
G
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
F
V
M
L
V
R
--
D
--
N
P
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
-------
P
E
S
K
P
G
N
G
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
Fugue
54.43
18%
-141
- C3 -
2PZD
2
HTRA2_HUMAN
A:
[5-113]
-----------------------------------------------------------------------------------------
R
R
Y
I
G
V
M
M
L
T
L
S
P
S
I
L
A
E
L
Q
L
R
E
P
S
F
P
D
V
Q
H
G
V
L
I
H
K
V
I
-------
L
G
S
P
A
H
R
A
G
L
R
P
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
A
E
D
V
Y
E
A
V
R
--
T
----
Q
S
Q
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
-------
P
E
V
T
G
W
T
M
F
W
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.11
26%
-89
- C3 -
3PV3
-
?
A:
[266-373]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
A
M
G
Y
P
E
D
F
Q
G
A
L
V
---
S
Q
V
N
P
N
----
S
P
A
E
L
A
G
L
K
A
G
D
I
I
T
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
--
L
L
-
R
V
G
S
T
V
K
I
I
V
E
R
D
N
K
P
L
T
L
S
A
V
V
T
D
I
K
S
H
E
Q
K
L
Q
S
N
N
P
F
L
Y
G
L
A
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
HHSearch
52.87
27%
-145
- C3 -
1LCY
-
HTRA2_HUMAN
A:
[256-322]
-----------------------------------------------------------------------------------------------------------------------
H
G
V
L
I
H
K
V
I
L
-------
G
S
P
A
H
R
A
G
L
R
P
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
A
E
D
V
Y
E
A
V
R
--
T
----
Q
S
Q
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
-------
P
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.62
28%
-126
- C3 -
1LCY
-
HTRA2_HUMAN
A:
[267-325]
-----------------------------------------------------------------------------------------------------------------------------------------
S
P
A
H
R
A
G
L
R
P
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
A
E
D
V
----
Y
--
E
A
V
R
T
Q
S
Q
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
-------
P
E
V
T
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
52.17
31%
-126
- C- -
2ZPM
-
RSEP_ECOLI
A:
[233-298]
-----------------------------------------------------------------------------------------------------------------------------------------
S
A
A
S
-
A
G
L
Q
A
G
D
R
I
V
-
V
D
G
Q
P
L
T
Q
W
V
T
F
V
M
L
V
R
--
D
--
N
P
G
-
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
-------
P
E
S
-
P
G
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
HHSearch
52.16
31%
-140
- C3 -
3PV2
-
?
A:
[374-434]
-----------------------------------------------------------------------------------------------------------------------
I
G
V
Q
V
V
G
A
S
E
-------
N
S
A
G
W
R
A
G
I
R
P
G
D
I
I
I
S
A
N
K
K
P
V
T
D
V
K
S
L
Q
T
I
A
Q
--
E
K
---
K
K
E
L
L
V
Q
V
L
R
G
P
G
S
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
51.73
32%
-127
- C3 -
4YO1
2
?
A:
[263-331]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
S
M
G
Y
A
E
D
F
Q
G
A
L
V
---
S
Q
V
N
----
Q
N
S
P
A
Q
L
A
G
L
K
S
G
D
V
I
V
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
L
L
R
A
G
S
T
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
50.73
23%
-88
- C3 -
3STJ
1
DEGQ_ECOLI
A:
[263-333]
-----------------------------------------------------------------------------------------------------------------------
R
G
A
F
V
S
E
V
L
P
-------
G
S
G
S
A
K
A
G
V
K
A
G
D
I
I
T
S
L
N
G
K
P
L
N
S
F
A
E
L
R
S
R
I
A
--
T
T
E
-
P
G
T
K
V
K
L
G
L
L
R
N
G
K
P
L
E
V
E
V
T
-------
L
D
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
50.67
32%
-121
- C3 -
4YNN
-
?
A:
[251-319]
--------------------------------------------------------------------------------------------------
H
L
T
P
E
L
-----
A
Q
S
M
G
Y
A
E
D
F
Q
G
A
L
V
---
S
Q
V
N
----
Q
N
S
P
A
Q
L
A
G
L
K
S
G
D
V
I
V
Q
I
N
D
T
K
I
T
Q
A
T
Q
V
K
T
T
I
S
L
L
R
A
G
S
T
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.55
31%
-129
- C3 -
2YTW
-
A:
[59-115]
-----------------------------------------------------------------------------------------------------------------------------------------
T
P
A
E
A
G
G
L
K
E
N
D
V
I
I
S
I
N
G
Q
S
V
V
S
A
N
D
V
S
D
V
I
K
--
R
E
S
----
T
L
N
M
V
V
R
R
G
N
E
D
I
M
I
T
V
I
-------
P
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
50.53
32%
-87
- C3 -
3ID3
-
RSEP_ECOLI
A:
[233-297]
-----------------------------------------------------------------------------------------------------------------------------------------
S
A
A
S
K
A
G
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
F
V
M
L
V
R
--
D
--
N
P
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
-------
P
E
S
K
P
G
N
G
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------