@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25400: (2016-07-10 )
MSLLERLNQDMKLYMKNREKDKLTVVRMVKASLQNEAIKLKKDSLTEDEELTVLSRELKQRKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLSEEELRTIVNETIAEVGASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20...-.....30........40........50........60-.........70........80........90.....-.----..--100.......110..-------.-----....120.......130........140......---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
KNREK
D
K
L
T
-
V
V
R
M
V
K
A
S
LQNE
A
I
K
LKKDSLTE
D
E
E
L
T
V
L
S
R
E
L
K
Q
--
R
K
D
S
L
Q
E
F
SNAN
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
YLPEQL
S
-
E
----
E
E
--
L
R
T
I
V
N
E
T
I
A
E
VGAS-------S-----K
A
D
M
G
K
V
M
G
A
I
MPKV-KGKA
D
G
S
L
I
N
K
L
V
S
S
QLS---------
30
HHSearch
89.91
100%
-78
- C3 -
1NG6
-
YQEY_BACSU
A:
[1-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
-
V
V
R
M
V
K
A
S
L
Q
N
E
A
I
K
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
K
Q
--
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
L
S
-
E
----
E
E
--
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
-------
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
-
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
21
Fugue
89.91
100%
-78
- C3 -
1NG6
-
YQEY_BACSU
A:
[1-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
-
V
V
R
M
V
K
A
S
L
Q
N
E
A
I
K
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
K
Q
--
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
L
S
-
E
----
E
E
--
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
-------
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
-
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
1
PsiBlast_PDB
89.49
100%
-78
- C3 -
1NG6
-
YQEY_BACSU
A:
[1-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
-
V
V
R
M
V
K
A
S
L
Q
N
E
A
I
K
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
K
Q
--
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
L
S
-
E
----
E
E
--
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
-------
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
-
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
8
PsiBlast_PDB
48.32
41%
-259
- C3 -
3IP4
-
GATB_STAAM
B:
[444-472]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
F
L
V
G
Q
I
M
K
A
S
-
K
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
----------
44
HHSearch
42.75
24%
-17
- C- -
4YE6
-
?
A:
[116-234]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
T
-
P
----
E
Q
--
I
E
E
A
V
E
A
A
I
N
R
H
R
P
Q
-------
L
L
V
E
RY
H
F
N
M
G
L
L
M
G
E
A
R
A
V
L
--
K
W
A
D
G
K
M
I
K
N
E
V
D
M
------------
6
PsiBlast_PDB
39.43
21%
43
- C3 -
3RKU
1
YM71_YEAST
A:
[51-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Y
L
E
A
S
N
G
D
M
K
L
I
L
A
A
R
R
L
E
K
L
E
E
L
K
K
T
I
D
Q
E
F
P
N
A
K
V
H
V
A
Q
L
D
I
T
Q
A
E
K
I
K
P
F
I
E
N
L
P
Q
--------
E
F
-------------
K
D
I
D
I
L
V
N
N
A
G
K
A
L
G
-
S
----
D
R
--
V
G
Q
I
A
T
E
D
I
Q
D
V
F
D
T
-------
N
-----
V
T
A
L
I
N
I
T
Q
A
V
L
P
I
F
-
Q
A
K
N
S
G
D
I
V
N
-----------------
41
HHSearch
38.87
14%
-149
- C3 -
2LKY
-
?
A:
[37-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
R
R
L
T
-
N
----
D
E
--
I
K
A
I
A
E
D
L
E
K
R
A
H
-
F
-------
D
-----
H
I
D
I
G
V
L
I
T
Q
M
T
D
E
M
-
P
R
E
E
D
I
E
R
V
R
-----------------
5
PsiBlast_PDB
38.46
36%
-136
- C3 -
3COM
-
STK4_HUMAN
A:
[92-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
F
K
N
--
T
D
L
W
I
-
V
M
E
Y
C
G
A
G
S
V
S
D
I
I
R
L
R
N
K
T
L
T
E
D
E
I
A
T
I
L
Q
S
T
L
K
------------------------------------------------------------------------------------------------------------------------
42
HHSearch
35.63
21%
-120
- C3 -
2KJG
-
?
A:
[13-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
F
-
K
G
K
V
N
F
N
L
V
M
Q
I
L
D
E
I
-----------
45
HHSearch
35.53
15%
-37
- C3 -
3MIX
-
FLHA_BACSU
A:
[501-569]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
V
L
V
E
E
V
T
P
N
P
L
S
-
V
----
G
D
--
I
Q
K
V
L
A
K
L
L
K
E
K
--
V
-------
S
-----
I
R
N
L
V
T
I
F
E
T
L
A
D
Y
G
K
L
T
T
-
D
S
D
L
L
T
E
Y
T
R
Q
A
L
----------
40
HHSearch
34.33
20%
-121
- C3 -
2KVC
-
?
A:
[35-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
R
R
L
S
-
H
----
D
E
--
V
K
A
V
A
N
E
L
M
R
L
G
-
D
F
-------
D
-----
Q
I
D
I
G
V
V
I
T
H
F
T
D
E
L
-
P
S
P
E
D
V
E
R
V
R
A
----------------
35
HHSearch
33.63
25%
169
* C3 *
3IP4
-
GATB_STAAM
B:
[362-473]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
L
T
P
E
N
L
A
G
M
I
K
L
I
E
D
G
TM
S
S
K
I
A
K
K
V
F
P
----
E
L
A
A
K
G
G
N
A
K
Q
I
M
E
D
N
G
L
V
Q
I
S
D
E
----
A
T
--
L
L
K
F
V
N
E
A
L
D
N
N
E
Q
S
V
E
D
Y
K
N
G
K
-----
G
K
A
M
G
F
L
V
G
Q
I
M
K
A
S
-
K
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
---------
29
Fugue
33.54
17%
-15
- C3 -
2AO9
-
?
A:
[13-132]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
A
K
L
D
E
L
K
Q
K
L
T
-
A
K
Q
I
Q
A
A
Y
L
L
V
E
N
E
L
M
E
E
E
K
R
T
Q
D
E
----
M
A
N
E
L
G
I
--
N
R
T
T
L
W
E
W
R
T
K
N
---------
Q
D
F
I
A
F
K
S
E
V
A
D
S
F
L
-
A
----
E
K
--
R
E
Q
V
Y
S
K
L
M
Q
L
I
L
G
P
-------
Q
-----
P
S
--
V
K
A
M
Q
L
Y
M
Q
R
F
-
G
L
L
T
D
K
K
V
I
E
G
D
L
--------------
43
HHSearch
33.40
9%
-26
- C3 -
3MHS
-
SUS1_YEAST
B:
[21-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Y
E
L
I
S
N
E
L
K
A
R
L
L
-
Q
E
G
W
V
D
K
--
V
K
D
L
T
K
S
E
M
N
I
N
E
---------------
S
T
N
F
T
Q
I
L
S
T
V
E
P
K
A
-
L
E
M
V
S
D
S
T
R
E
T
V
L
--------------
2
PsiBlast_PDB
32.94
28%
14
- C3 -
1SOU
-
?
A:
[1-104]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
K
S
E
L
R
K
K
V
L
H
-
K
R
I
N
L
S
E
-
E
E
R
R
R
L
S
E
K
V
I
S
--
N
L
K
S
L
P
E
F
K
K
S
K
K
V
A
L
Y
C
P
I
K
G
E
V
D
L
T
P
L
F
-
P
E
V
L
K
-
E
----
K
E
L
I
L
P
K
V
E
G
N
E
I
S
L
Y
R
V
H
-------
S
-----
P
A
C
L
G
V
G
A
F
G
I
M
E
P
V
-
E
G
-------------------------
23
Fugue
32.14
16%
142
- C3 -
3IP4
1
GATB_STAAM
B:
[1-482]
M
H
F
E
T
V
I
G
L
E
V
H
V
E
L
KTDSKMFSPSPAHFGAEPNSNTNVIDLAYPG
V
L
P
V
V
N
K
R
A
V
D
W
A
M
R
A
A
M
A
L
N
M
E
I
A
T
E
S
K
F
D
R
K
N
Y
F
Y
PDNPKAY
Q
I
S
Q
F
DQPIGEN
G
Y
I
D
I
E
V
D
G
E
T
K
R
I
G
I
T
R
L
H
M
E
E
D
A
G
K
S
T
H
K
G
E
Y
S
L
V
D
LNRQG
T
P
L
I
E
I
V
S
EPDIRS
P
K
E
A
Y
A
Y
L
E
K
L
R
S
I
I
Q
Y
T
GVSDVKMEEGS
L
R
C
D
A
N
I
S
L
R
P
Y
GQEKF
G
T
K
A
E
L
K
NLNS
F
N
Y
V
R
K
G
L
E
Y
E
E
K
R
Q
E
E
E
L
L
N
G
G
E
I
G
Q
E
T
R
R
F
D
ESTG
K
T
I
L
M
R
V
K
E
GSDDYRYFPEPDI
V
P
L
Y
I
D
D
A
W
K
E
R
V
R
Q
T
IPEL
P
D
E
R
K
A
K
Y
V
NELGLP
A
Y
D
A
H
V
L
T
LT
K
E
M
S
D
F
F
E
S
T
I
E
H
GAD
V
K
L
T
S
N
W
L
M
G
G
V
N
E
Y
L
N
K
-
N
Q
V
E
L
L
-
D
T
K
L
T
P
E
N
L
A
G
M
I
K
L
I
E
D
G
T
M
S
S
K
I
A
K
K
V
F
P
E
L
A
A
K
--
G
G
N
A
K
Q
I
M
E
D
N
G
L
V
Q
I
S
D
E
A
T
L
L
K
F
V
N
E
A
L
D
N
N
E
Q
S
-
V
----
E
D
--
Y
K
-----------
N
G
-------
K
-----
G
K
A
M
G
F
L
V
G
Q
I
M
K
A
S
-
K
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
K
R
LEHHHHH
33
HHSearch
31.49
19%
170
- C3 -
3AL0
-
GATB_THEMA
B:
[369-480]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
L
T
P
Q
H
F
A
D
L
F
K
L
M
D
E
G
KI
S
I
K
I
A
K
E
I
F
P
----
E
V
F
E
T
G
K
M
P
S
Q
I
V
E
E
K
G
L
T
Q
I
N
D
E
----
K
L
--
I
E
E
L
V
K
K
A
M
E
Q
N
P
K
A
V
Q
D
Y
K
SG
K
-----
K
K
A
A
G
F
F
V
G
Y
V
M
R
E
T
-
K
G
K
A
N
P
E
L
T
N
R
I
I
Q
K
L
L
E
---------
13
PsiBlast_PDB
31.42
46%
-114
- C2 -
1TXQ
-
DCTN1_HUMAN
A:
[43-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
A
Y
V
G
A
T
-------
L
-----
F
A
-
T
G
K
W
V
G
V
I
L
D
E
A
-
K
G
K
N
D
G
T
V
-------------------
14
PsiBlast_PDB
30.11
46%
-94
- C2 -
2HQH
1
DCTN1_HUMAN
A:
[29-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
A
Y
V
G
A
T
-------
L
-----
F
A
-
T
G
K
W
V
G
V
I
L
D
E
A
-
K
G
K
N
D
G
T
V
-------------------
18
PsiBlast_PDB
29.97
46%
-91
* C2 *
2HKQ
-
DCTN1_HUMAN
B:
[43-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
A
Y
V
G
A
T
-------
L
-----
F
A
-
T
G
K
W
V
G
V
I
L
D
E
A
-
K
G
K
N
D
G
T
V
-------------------