@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25410: (2016-07-10 )
MSKTVVRKNESLEDALRRFKRSVSKTGTLQEARKREFYEKPSVKRKKKSEAARKRKF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-.----..---10........20....-..--------..30..-----.-......40.......--.50......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSKTVV-R----KN---
E
S
L
E
D
A
L
R
R
F
K
R
S
VSK-TG--------
T
L
Q
-
E
A
-----
R
-
K
R
E
F
YEKPSV
K
R
K
K
K
--
S
E
A
A
RKRKF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
70.88
26%
-3
- C3 -
5AJ3
-
?
U:
[8-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
M
-
V
----
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
--------
L
I
E
-
D
I
-----
K
-
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
--
S
Y
E
T
C
R
R
I
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
68.16
57%
74
- C3 -
4A2I
-
RS21_ECOLI
U:
[5-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
R
----
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
--------
V
L
A
-
E
V
-----
R
-
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
--
K
A
S
A
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
64.88
54%
59
- C3 -
4ADV
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
-
R
----
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
--------
V
L
A
-
E
V
-----
R
-
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
--
K
A
S
A
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.88
54%
59
- C3 -
4ADV
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
-
R
----
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
--------
V
L
A
-
E
V
-----
R
-
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
--
K
A
S
A
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
61.90
26%
-9
- C3 -
5AJ3
-
?
U:
[11-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
V
-
Q
----
E
----
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
--------
L
I
E
-
D
I
-----
K
-
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
--
S
Y
E
T
C
R
R
I
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.23
29%
-81
- C3 -
3K4I
1
?
A:
[185-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
A
E
V
V
-
L
----
R
A
---
R
A
V
E
Q
T
E
R
R
I
I
E
A
I
S
S
-
G
S
--------
T
L
E
-
Q
A
-----
R
-
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
56.61
23%
-110
* C3 *
2JVF
-
?
A:
[18-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
R
V
-
S
----
T
G
---
K
E
L
E
R
A
L
Q
E
L
E
K
A
L
A
R
-
A
G
--------
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
55.93
7%
-122
- C3 -
3WZ4
3
?
A:
[42-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
G
W
D
Q
F
L
G
A
L
E
Q
-
S
N
--------
N
L
D
-
A
V
-----
K
-
A
K
K
L
V
V
S
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.65
19%
66
- C3 -
1QOY
-
HLYE_ECOLI
A:
[-4-298]
----------------------------------------------------------------------------
S
M
A
E
I
V
A
D
K
T
V
E
V
V
K
N
A
I
E
T
A
D
G
A
L
D
L
Y
N
KYLDQVIP
W
Q
T
F
D
E
T
I
K
E
LSRFKQEYS
Q
A
A
S
V
L
V
G
D
I
K
T
L
L
M
D
S
Q
D
K
Y
F
E
A
T
Q
T
V
Y
E
W
C
G
V
A
T
Q
L
L
A
A
Y
I
L
L
F
DEYN
E
K
K
A
S
A
Q
K
D
I
L
I
K
V
L
D
D
G
I
T
K
L
N
E
A
Q
K
S
L
L
V
S
S
Q
S
F
N
N
A
S
G
K
L
L
A
L
D
S
Q
L
T
N
D
F
SEKS
S
Y
F
Q
S
Q
V
D
K
I
R
K
E
A
Y
A
G
A
AAG
V
V
V
G
P
FG
L
I
I
S
Y
S
I
A
A
GVVEG
K
L
I
P
E
L
K
N
K
L
K
S
V
Q
N
F
F
T
T
L
S
N
T
V
K
-
Q
----
A
N
---
K
D
I
D
A
A
K
L
K
L
T
T
E
I
A
A
-
I
G
--------
E
I
K
T
E
T
-----
E
-
T
T
R
F
Y
V
D
Y
D
D
L
M
L
S
L
--
L
K
E
A
A
K
K
M
I
N
T
C
N
E
Y
Q
K
R
H
GKKTLF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
55.54
26%
-20
- C3 -
3J6V
-
RT21_BOVIN
U:
[1-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAKHLKF
I
A
R
T
V
M
-
V
----
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
--------
L
I
E
-
D
I
-----
K
-
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
--
S
Y
E
T
C
R
R
I
Y
NMEMARKINFLMRKNRADPWQGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
54.81
7%
-123
- C3 -
5CNL
5
?
A:
[40-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
W
I
A
Y
S
K
A
L
N
Q
-
S
K
--------
L
P
E
-
V
V
-----
Q
-
K
N
A
Y
F
V
N
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.03
57%
157
- C3 -
2YKR
-
RS21_ECOLI
U:
[5-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
R
----
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
--------
V
L
A
-
E
V
-----
R
-
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
--
K
A
S
A
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
50.92
55%
137
- C3 -
2YKR
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
V
-
R
----
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
--------
V
L
A
-
E
V
-----
R
-
R
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
--
K
A
S
A
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
44.95
26%
159
- C3 -
3J6V
-
RT21_BOVIN
U:
[8-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
M
-
V
----
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
--------
L
I
E
-
D
I
-----
K
-
R
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
--
S
Y
E
T
C
R
R
I
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
44.88
22%
143
- C3 -
2KL8
-
?
A:
[1-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
M
D
I
R
F
R
G
D
----
D
L
---
E
A
F
E
K
A
L
K
E
M
I
R
Q
A
R
K
F
A
G
--------
T
V
T
-
Y
T
L
D
GN
D
L
-
E
I
R
I
T
G
V
P
E
Q
V
R
K
E
L
--
A
K
E
A
E
R
L
A
K
E
F
N
I
T
V
T
Y
T
I
RLEHHHHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.00
23%
96
- C3 -
5EZ7
3
?
A:
[2-392]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
P
Q
A
L
S
T
D
I
L
I
V
G
GG
I
A
G
L
W
L
N
A
R
L
R
R
A
G
Y
A
T
V
L
V
E
SASLGGGQSV
K
S
Q
G
I
I
-
H
GGTG
A
S
---
E
A
I
A
D
M
P
R
R
W
R
A
C
L
G
S
-
D
G
ELDLRGVR
L
L
S
-
E
A
-----
H
--
Y
L
W
S
P
V
E
Q
A
K
G
E
D
L
--
P
P
A
L
R
D
K
G
F
K
G
K
A
Y
R
L
T
E
I
V
F
D
V
P
D
L
I
R
R
L
A
E
L
A
GDS
L
L
A
G
E
R
I
E
P
L
R
EGRELA
G
L
C
V
DG
R
E
I
R
A
Q
R
V
V
L
SAGAG
N
E
A
L
L
R
E
L
GLEQP
A
M
Q
R
R
P
L
H
M
V
M
V
K
A
ATL
K
P
L
Y
A
H
C
L
G
A
GPKPR
I
T
V
T
T
H
P
T
RDG
Q
S
V
W
Y
L
G
G
DIAE
T
D
G
V
A
RD
E
A
A
Q
I
A
E
A
R
R
E
L
A
K
LLPWIDLGQ
A
Q
W
A
T
L
R
V
D
R
A
E
P
A
QSNLLRPD
N
A
F
L
A
E
Q
GR
L
L
V
G
W
PTKLAL
A
P
D
F
A
D
R
V
C
A
R
L
E
E
D
GI
R
P
S
E
H
A
A
LPQ
L
P
R
P
P
L
A
E
P
A
W
E
V
A
F
A
14
HHSearch
43.34
7%
-62
- C3 -
3WZ3
-
?
A:
[42-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
G
F
A
G
Y
V
N
A
L
Q
A
-
S
N
--------
I
L
E
-
T
I
-----
K
-
K
E
K
M
N
L
T
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
37.78
16%
117
- C3 -
4H2Q
7
?
A:
[10-379]
K
T
R
R
A
E
V
A
G
GG
F
A
G
L
T
A
A
I
A
L
K
Q
N
GWD
V
R
L
H
E
KSSELRAFGA
G
I
Y
L
W
H
N
G
L
R
V
L
E
G
L
GA
L
D
D
V
L
QG
S
H
T
P
PTY
E
T
W
M
HNKSVSKETFNGL
P
W
R
I
M
T
R
S
H
L
H
D
A
L
V
N
R
A
R
A
L
GV
D
I
S
V
NSEAV
A
A
D
PV
G
R
L
T
L
QTG
E
V
L
E
A
DLIVGADGVGS
K
V
R
D
S
I
GFK
Q
D
R
W
V
S
K
D
G
L
I
R
L
I
V
P
RMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNEN
E
L
Y
L
G
L
M
A
P
AADPRGSSVPID
L
E
V
W
V
E
M
F
PFL
E
P
C
L
I
E
A
A
K
LKTARY
D
K
Y
E
T
T
K
L
DSWTRGK
V
A
L
V
G
DAA
H
A
M
C
PALAQ
G
A
G
C
A
M
V
N
A
F
S
L
S
Q
D
L
--
E
----
E
G
---
S
S
V
E
D
A
L
V
A
W
E
T
R
I
R
P
-
I
T
--------
D
R
C
-
Q
A
-----
L
-
S
G
D
Y
A
A
N
R
S
L
S
K
G
N
M
FT
P
A
A
L
E
A
A
R
Y
DPLRRVYSWPQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
32.01
6%
-70
- C3 -
4JTM
-
?
A:
[45-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
---
L
N
E
R
Q
Y
Y
Q
L
F
L
N
L
L
E
A
-
Q
G
--------
Y
A
V
-
V
P
-----
M
E
N
D
V
L
K
V
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
29.66
12%
114
- C3 -
1HYN
-
B3AT_HUMAN
P:
[56-348]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVYVELQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHLSHLTFWSLLELRRV
F
T
K
G
T
V
-
L
----
L
D
LQE
T
S
L
A
G
V
A
N
Q
L
L
D
R
F
I
F
-
E
D
--------
Q
I
R
-
P
Q
-----
D
-
R
E
E
L
L
R
A
L
L
L
K
H
S
H
A
--
G
E
L
E
A
L
G
G
V
KPAVLTRSGDPSQPLLPQHSSLETQLFCEQGDGGTEGHSPSGILEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLVPVQRELLRRRYQ--------------------------------------------------------------------------