@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25990: (2016-07-11 )
MALSPEIEFEDIEDDSEVIETSQTYKIDFENGRITNEIITGLEAIKQFVYLSLHTERYAYSVYSHDIGNELQDVLADNETTDAYKKMEIPRLIEEALIYDDRISAVTDFEIEKQGESFRVSFTVETDEGTLEIEEVLGEDV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------.........10........20.......---.30-.........40-----........--------50.----.---......60-----------...-.--.------------....70.-....----...80........90..-------------....---------------..-100.....--....110..---.....-----------120.......---130.......140-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------MALSPE
I
E
F
EDIED
D
S
E
V
IETS
Q
T
Y
K
I
D---FE--NGR
I
T
N
E
I
I
T
G
-----
L
E
A
I
K
Q
F
V
--------
Y
L
S
----
L
---HTE
R
Y
A
Y
------------
S
VY-S--
H
------------
D
I
G
N
E
L
Q
-
D
V
LA----DNET
T
D
A
Y
K
KM
E
I
P
R
L
I
-------------
E
E
A
L
---------------IY-D--DRIS
A
--
V
T
D
F
E
I
EKQ---GE
S
F
R
-----------
V
S
F
T
V
ETDEG---
T
L
E
I
E
E
V
LGEDV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
55.82
16%
-6
* C6 *
1L2M
-
REP_TYCSV
A:
[4-121]
-----------------------------------------------------------------------------------------------------------
S
G
R
F
S
I
K
A
K
N
Y
F
L
T
---
Y
P
--
K
C
D
L
T
-----
K
-----
E
N
A
L
S
Q
I
T
--------
N
L
Q
----
T
---
P
T
N
K
L
F
I
------------
K
I
C
-
R
E
L
H
------------
E
N
G
E
P
H
L
-
H
I
L
I
----
Q
F
E
G
K
Y
N
C
T
N
Q
R
F
F
D
L
V
-----------------------------------
S
--
P
T
R
S
A
--
H
F
H
P
N
I
Q
G
A
---
K
S
S
S
D
-----------
V
K
S
Y
I
D
K
D
G
D
---
V
L
E
W
G
T
F
Q
I
D
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.09
25%
0
- C- -
3VE2
-
TBB1_NEIMI
A:
[198-387]
--------------------------------------------------------------------------------------------------------
L
K
D
D
H
E
G
Y
G
F
T
S
N
L
E
V
D
---
F
G
--
N
K
K
L
T
G
K
L
I
R
N
-----
N
A
S
L
--------------
D
----
K
---
H
T
T
Q
Y
-
Y
------------
S
L
D
-
A
--
Q
------------
I
T
G
N
R
F
-----------
N
G
T
A
T
A
T
D
K
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
49.47
15%
-224
* C5 *
3H90
2
FIEF_ECOLI
A:
[206-245]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
R
Q
E
I
-------------
I
D
I
V
---------------
T
S
-
W
--
P
G
V
S
G
--
A
H
D
L
R
T
R
Q
S
---
G
P
T
R
F
-----------
I
Q
I
H
L
E
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
48.01
13%
-271
- C5 -
2ZZT
1
?
A:
[11-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
D
D
I
-------------
F
A
V
L
---------------
E
R
-
F
--
P
N
V
H
N
--
P
H
R
V
R
I
R
R
V
---
G
T
-
Y
F
-----------
I
E
M
D
I
E
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.25
21%
66
- C2 -
4QRK
2
?
A:
[9-220]
-----------------------------------------------K
P
K
E
E
I
K
I
V
E
PNGAE
K
T
K
L
N
L
N
F
G
V
G
K
L
N
I
S
G
NEEKL
M
K
G
K
F
I
Y
SE
N
E
W
K
P
E
I
K
Y
E
V
K
D
K
D
G
E
L
E
I
S
Q
P
G
L
K
S
G
---
N
V
SL
N
N
K
R
N
E
W
N
I
N
L
-----
N
E
K
I
P
T
E
I
--------
K
L
S
----
L
---
G
T
G
E
F
K
A
DLSKINLK
E
L
--
N
V
G
M
G
--
V
G
K
V
D
L
-------
D
I
S
G
N
Y
K
N
N
V
K
V
----
N
I
E
G
G
V
G
E
A
T
V
Y
L
P
K
S
I
-------------
G
V
K
I
---------------
K
A
-
E
--
K
G
V
G
A
--
V
N
A
N
G
F
I
V
E
---
G
E
N
I
Y
K
N
SQYGKSK
N
S
I
E
V
N
I
E
A
G
V
G
---
A
I
N
I
K
Q
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.37
25%
-56
- C5 -
4NJQ
2
APEB_PSEAE
A:
[133-234]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
L
E
S
R
L
V
D
F
-----
R
K
A
I
A
V
I
P
--------
N
L
A
----
I
---
H
L
N
R
A
A
N
------------
E
G
W
-
P
--
I
------------
N
A
Q
N
E
L
P
-
P
I
I
A
----
Q
L
A
P
G
E
A
---
A
D
F
R
L
L
L
-------------
D
E
Q
L
---------------
L
R
-
E
--
H
G
I
T
A
DV
V
L
D
Y
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.06
25%
-71
- C5 -
4NJR
1
APEB_PSEAE
A:
[133-216]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
L
E
S
R
L
V
D
F
-----
R
K
A
I
A
V
I
P
--------
N
L
A
----
I
---
H
L
N
R
A
A
N
------------
E
G
W
-
P
--
I
------------
N
A
Q
N
E
L
P
-
P
I
I
A
----
Q
L
A
P
G
E
A
---
A
D
F
R
L
L
L
-------------
D
E
Q
L
---------------
L
R
-
E
--
H
G
I
T
A
DV
V
L
D
Y
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
44.36
25%
-61
- C5 -
3WT4
1
APEB_PSEAE
A:
[133-216]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
L
E
S
R
L
V
D
F
-----
R
K
A
I
A
V
I
P
--------
N
L
A
----
I
---
H
L
N
R
A
A
N
------------
E
G
W
-
P
--
I
------------
N
A
Q
N
E
L
P
-
P
I
I
A
----
Q
L
A
P
G
E
A
---
A
D
F
R
L
L
L
-------------
D
E
Q
L
---------------
L
R
-
E
--
H
G
I
T
A
DV
V
L
D
Y
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.95
25%
-62
- C5 -
4OID
-
APEB_PSEAE
A:
[133-234]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
L
E
S
R
L
V
D
F
-----
R
K
A
I
A
V
I
P
--------
N
L
A
----
I
---
H
L
N
R
A
A
N
------------
E
G
W
-
P
--
I
------------
N
A
Q
N
E
L
P
-
P
I
I
A
----
Q
L
A
P
G
E
A
---
A
D
F
R
L
L
L
-------------
D
E
Q
L
---------------
L
R
-
E
--
H
G
I
T
A
DV
V
L
D
Y
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.32
25%
-49
- C5 -
4OIW
-
APEB_PSEAE
A:
[135-235]
--------------------------------------------------------------------------------------------------------------------------------
N
G
K
L
E
S
R
L
V
D
F
-----
R
K
A
I
A
V
I
P
--------
N
L
A
----
I
---
H
L
N
R
A
A
N
------------
E
G
W
-
P
--
I
------------
N
A
Q
N
E
L
P
-
P
I
I
A
----
Q
L
A
P
G
E
A
---
A
D
F
R
L
L
L
-------------
D
E
Q
L
---------------
L
R
-
E
--
H
G
I
T
A
DV
V
L
D
Y
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
43.14
16%
-19
- C5 -
2IA7
1
?
A:
[24-118]
----------------------------------------------------------------------------------------------------------------------------------
A
M
--
V
L
S
S
A
-----
E
E
D
I
A
E
S
I
--------
R
I
I
----
L
---
G
T
A
R
G
E
R
------------
V
-
M
-
R
--
P
------------
D
F
G
C
G
I
H
-
D
R
V
F
----
S
V
--
I
N
T
T
T
L
G
L
I
E
N
E
V
-------------
K
E
A
L
---------------
I
L
W
E
--
P
R
I
E
---
L
L
S
V
T
A
S
P
R
EAA
E
G
R
L
L
-----------
I
D
I
E
Y
R
V
R
S
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
43.08
16%
22
- C6 -
4N6W
3
?
A:
[39-225]
---------------------------------------------------------------------------------------------
M
S
L
S
N
S
S
K
V
S
V
L
I
S
L
L
E
K
S
R
D
L
---------------
D
Y
I
G
E
A
I
N
Q
-----
L
E
H
S
L
Q
C
A
--------
Y
F
A
----
Q
R
S
G
A
D
N
E
M
V
L
------------
A
A
L
-
L
--
H
------------
D
L
G
H
Y
C
N
-
G
G
Y
G
VWQ
H
E
K
V
G
A
D
Y
L
R
G
L
G
F
S
E
R
V
-------------
A
C
L
I
E
G
H
V
A
A
K
R
Y
L
V
S
S
K
A
S
Y
-
L
--
K
N
L
S
D
--
A
S
R
K
T
L
E
Y
Q
---
G
G
P
M
D
-----------
E
G
E
R
R
L
F
E
E
R
ED-
F
K
D
C
L
K
I
R
A
W
D
E
K
GKQTD
L
K
V
P
G
PEHY
R
K
M
M
E
E
H
L
S
E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
42.80
16%
-41
- C1 -
4QIQ
1
XYLE_ECOLI
A:
[7-470]
S
Y
I
F
S
I
T
L
V
A
T
L
G
G
L
L
F
G
Y
D
T
A
VISGT
V
E
S
L
N
T
V
FVAPQNLS
E
S
A
A
N
S
L
L
G
F
C
V
A
S
A
L
I
G
C
I
I
G
G
A
L
G
G
Y
C
S
N
RFG
R
R
D
S
L
K
I
A
A
V
L
F
F
I
S
G
V
G
S
A
W
P
E
L
G
F
T
S
I
N
P
D
N
T
V
P
V
Y
L
A
G
Y
V
P
E
---
F
V
--
I
Y
R
I
I
G
G
I
G
V
G
-----
L
A
S
M
L
S
P
M
--------
Y
I
A
----
E
---
L
A
P
-----------------------------------------------
A
----
H
I
R
G
K
L
V
S
F
N
Q
F
A
I
I
F
G
-------------
Q
L
L
V
---------------
Y
C
-
V
--
N
Y
F
I
A
--
R
S
G
D
A
S
W
L
N
---
T
D
G
W
R
-----------
Y
M
F
A
S
E
C
I
P
A
---
L
L
F
L
M
L
L
Y
T
V
P
E
SPRWLMT
L
A
T
Q
A
V
Q
E
I
K
H
S
L
DRL
L
M
F
G
V
G
V
I
V
I
G
V
M
L
S
I
F
Q
Q
F
V
G
I
N
V
V
L
Y
Y
A
P
E
V
F
K
T
L
GAS
T
D
I
A
L
L
Q
T
I
I
V
G
V
I
N
L
T
F
T
V
L
A
I
M
T
V
DKFGRKP
L
Q
I
I
G
A
L
G
M
A
I
G
M
F
S
L
G
T
A
F
Y
T
QAP
G
I
V
A
L
L
S
M
L
F
Y
V
A
A
F
A
M
SWGP
V
C
W
V
L
L
S
E
I
F
PNA
I
R
G
K
A
L
A
I
A
V
A
A
Q
W
L
A
N
Y
F
V
S
W
T
FPMMDKN
S
W
L
V
A
H
FHNGF
S
Y
W
I
Y
G
C
M
G
V
L
A
A
L
F
M
W
KFVPETKGKTL
22
HHSearch
40.79
14%
-272
- C5 -
3W61
1
?
A:
[7-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
N
R
I
-------------
V
E
A
A
---------------
E
R
-
V
--
P
G
V
R
G
--
V
I
H
L
R
A
R
Y
V
---
G
Q
D
I
W
-----------
A
D
M
I
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
38.61
12%
-3
- C6 -
1BWZ
-
DAPF_HAEIN
A:
[117-258]
---------------------------------------------------------------------------------------------
N
M
G
E
P
I
W
E
P
A
K
I
P
F
T
A
N
--
K
F
E
K
N
Y
I
L
R
---
T
D
--
I
Q
T
V
L
C
G
A
V
S
M
------
G
N
P
H
C
V
V
--------
Q
V
D
DIQT
A
---
N
V
E
Q
L
G
P
------------
L
L
E
-
S
--
H
------------
E
R
F
P
E
R
V
-
N
A
G
F
----
M
Q
I
I
N
--
K
E
H
I
K
L
R
V
Y
E
-------------
R
G
A
G
---------------
E
T
-
Q
AC
G
S
G
A
C
--
A
A
V
A
V
G
I
M
Q
---
G
L
L
N
N
------------
N
V
Q
V
D
L
P
G
G
---
S
L
M
I
E
W
N
G
V
G
H
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.10
27%
13
* C8 *
2QZU
-
?
A:
[374-450]
-------------------------------------------------------------------------------------------------------------
E
I
P
E
T
V
Q
T
F
D
L
------------
S
N
E
V
L
T
G
KNKKD
L
V
Q
P
Y
Y
F
V
KFDNHA
T
G
Y
R
G
----
L
---
R
T
D
R
Y
T
Y
------------
A
V
H
-
A
--
T
------------
D
--
G
K
I
D
-
N
V
I
L
----
F
D
R
T
N
D
P
H
E
M
N
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
37.05
14%
58
- C3 -
4Q58
-
ITB4_HUMAN
D:
[1127-1320]
-----------------------------------------------------------------------------------LGAPQN
P
N
A
K
A
A
G
S
R
K
I
H
F
N
W
L
P
P
S
G
K
P
M
G
Y
R
V
K
Y
W
I
Q
GDS
E
S
--
E
A
H
L
L
D
S
K
V
P
S
-----
V
E
L
T
N
L
Y
P
--------
Y
C
D
----
Y
---
E
M
K
V
C
A
Y
G
AQGEGPYSS
L
V
S
C
R
-
T
--
H
Q
E
VPSEPGRL
A
F
N
V
V
S
S
T
V
-
T
Q
L
S
----
W
A
E
P
A
E
T
N
G
E
I
T
A
Y
E
V
C
Y
G
L
V
N
DDNRPI
G
P
M
K
K
V
---------------
L
V
-
D
--
N
P
K
N
R
--
M
L
L
I
E
N
L
R
E
---
S
Q
P
Y
R
-----------
Y
T
V
K
A
R
N
G
A
G
W
G
P
E
R
E
A
I
I
N
L
A
T
Q
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
36.24
19%
-33
- C5 -
3BYP
1
?
A:
[11-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
R
I
-------------
R
A
F
L
---------------
Q
E
-
R
I
R
G
R
A
L
E
--
V
H
D
L
K
T
R
R
A
---
G
P
R
S
F
-----------
L
E
F
H
L
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
34.83
25%
21
- C8 -
3VE1
2
TBB1_NEIMI
A:
[198-374]
--------------------------------------------------------------------------------------------------------
L
K
D
D
H
E
G
Y
G
F
T
S
N
L
E
V
D
---
F
G
--
N
K
K
L
T
G
K
L
I
R
N
-----
N
A
S
L
N
N
N
T
--------
N
N
D
----
K
---
H
T
T
Q
Y
-
Y
------------
S
L
D
-
A
--
Q
------------
I
T
G
N
R
F
-----------
N
G
T
A
T
A
T
D
K
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
32.17
36%
-74
- C5 -
1LK9
-
ALLN1_ALLSA
A:
[371-404]
---------------------------------------------------------------------------------------------------------
E
E
D
K
D
C
Y
Q
T
----------
F
Q
--
N
G
R
I
N
T
Q
N
G
V
G
-----
F
E
A
S
S
R
Y
V
--------
R
L
S
----
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------