@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu26100: (2016-07-11 )
MKIRGLDQFIQSLDRASRGGLKRKYEQWLESMGFEFLDIIQDEIIRTKTVDTRRLLNSFQKGDQDNIFSMTEGSLKLDVGTNLDYASYVNDGHFTIDPSKNQDRRWVPGRWKGDRFEYDPAEKNSGMLLKFRWVDGSGFWDNAMAIFQLMFERSLERKLQQWIYEEF
Atome Classification :
(20 SA)
--------------------.........10........-20----------......-----...30-----....---.-.-...40.......---.-----50........60.-----..------.-....70...-.....80-----...--......90.....----------...100..----------------...----..110.-......-------120.......130---------..---.---.....140.......150.-....-.-.160.....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------MKIR
G
L
D
Q
F
I
Q
S
L
D
R
A
SRG-
G
-----------
L
K
R
K
Y
E
-----
Q
W
L
E
------SM
G
F
---
E
-
F
-
L
D
I
I
Q
D
E
I
IRTK---T-----V
D
T
R
R
L
L
N
S
F
QKG-----DQ------D-
N
I
F
SMTEG
S
-
L
K
L
D
VG------TNL--DY
A
S
YVNDG
H
F
T
I----------DPSKNQDR----------------RWV----PGRWKG-DRFEYD-------PAEKNS
G
M
L
L
K
F
----------
R
W---V---DGSGF
W
D
N
A
M
A
I
F
Q
L
M
F
E
R
-
S
L
E
R
-
K
-
L
Q
Q
W
I
Y
EEF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.20
25%
94
- C7 -
1BCO
-
TNPA_BPMU
A:
[264-399]
---------------------------------------------------------------
Q
W
I
N
------
G
D
G
Y
L
H
N
V
-
F
-
V
R
W
F
N
G
D
V
I
R
P
K
---
T
W
F
W
Q
D
V
K
T
R
K
I
L
-
G
W
R
C
D
-----
V
S
------
E
-
N
I
-----
D
S
-
I
R
L
S
F
M
------
D
V
V
--
T
R
Y
G
I
P
E
D
F
H
I
T
I
----------
D
N
T
R
G
A
A
N
----------------
K
W
L
TGGA
P
N
R
Y
R
F
-
K
V
K
E
D
D
-------
P
K
G
L
F
L
L
M
G
A
K
M
----------
H
W
TSV
V
---
A
G
K
G
-
W
G
Q
A
K
P
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
63.66
25%
83
- C7 -
1BCM
-
TNPA_BPMU
A:
[264-391]
---------------------------------------------------------------
Q
W
I
N
------
G
D
G
Y
L
H
N
V
-
F
-
V
R
W
F
N
G
D
V
I
R
P
K
---
T
W
F
W
Q
D
V
K
T
R
K
I
L
-
G
W
R
C
D
-----
V
S
------
E
-
N
I
-----
D
S
-
I
R
L
S
F
M
------
D
V
V
--
T
R
Y
G
I
P
E
D
F
H
I
T
I
----------
D
N
T
R
G
A
A
N
----------------
K
W
L
TGGA
P
N
R
Y
R
F
-
K
V
K
E
D
D
-------
P
K
G
L
F
L
L
M
G
A
K
M
----------
H
W
TSV
V
---
A
G
K
G
-
W
G
Q
A
K
P
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
62.95
16%
31
- C5 -
4KBL
6
ARI1_HUMAN
A:
[101-554]
------------------Y
R
Y
E
V
L
T
A
E
Q
I
L
Q
H
M
V
E
C
I
R
E
-------------------------------------------------
V
N
E
V
I
Q
N
P
---
A
-----
T
I
T
R
I
L
L
S
H
F
N
W
D
-----
K
E
------
K
-
L
M
E
R
Y
F
D
G
N
-
M
P
C
Q
I
-------
C
Y
L
--
N
Y
P
N
S
Y
F
T
G
L
-----------------
E
C
G
H
----------------
K
F
C
----
M
Q
C
W
S
--
E
Y
L
T
T
K
-------
I
M
E
E
G
M
G
Q
T
I
S
C
-----------
P
---
A
---
H
G
C
D
I
L
V
D
D
N
T
V
M
R
L
I
T
D
S
-
K
V
K
L
-
K
-
Y
Q
H
L
I
T
N
S
F
V
E
C
NRLLKWCPAPDCH
H
V
V
K
V
QYPDAKPVRCKCG
R
Q
F
C
FNCGENWHDPVK
C
K
W
L
K
K
W
I
K
K
CIAAN
T
K
E
C
PKCH
V
T
I
E
K
DGGCNH
M
V
C
R
N
QNCK
A
E
F
C
WVCLGPWEPHGSAWYNCNRYNRSR
A
A
L
Q
R
Y
L
F
Y
C
N
R
Y
M
N
H
M
Q
S
L
R
F
E
H
K
L
Y
A
Q
V
K
Q
K
MEWIEVQF
L
K
K
A
V
D
V
L
C
Q
C
R
A
T
L
M
Y
T
Y
V
F
A
F
Y
LKKN
N
Q
S
I
I
F
E
N
N
Q
A
D
L
E
N
A
T
E
V
L
S
G
Y
L
E
R
D
I
S
Q
D
SLQD
I
K
Q
K
V
Q
D
K
Y
R
Y
C
E
S
R
R
R
V
L
L
Q
H
V
H
E
G
YEKDLW
28
Fugue
51.72
21%
-59
- C6 -
1A8Y
-
?
?:
[229-347]
---------------------
T
L
R
K
L
K
-------------------------
P
E
S
M
Y
E
-----
T
W
E
D
------
D
M
D
G
---
I
-
H
-
I
V
A
F
A
E
E
----
A
---
D
-----
P
D
G
Y
E
F
L
E
I
L
K
S
V
-----
A
Q
------
D
-
N
----------------------------
T
D
N
P
D
L
S
I
I
W
I
----------
D
P
D
D
F
P
--------------------
L
----
L
V
P
Y
W
E
-
K
T
F
D
I
D
-------
L
S
A
P
Q
I
G
V
V
N
V
----------------
T
---
D
A
D
S
V
W
----------
M
E
P
-
S
-
A
E
-
E
-
L
E
D
W
L
E
D
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
48.83
19%
37
- C- -
3WOZ
-
CLAP2_MOUSE
A:
[645-869]
TED
V
A
E
V
L
N
R
C
A
SSN
W
S
E
R
K
E
G
L
L
G
L
Q
N
L
L
K
N
Q
R
T
L
S
R
I
-
E
-----------
L
K
R
L
C
E
-----
I
F
T
R
M
F
A
DPH
G
K
V
F
---
S
M
F
-
L
E
T
L
V
D
F
I
Q
V
H
K
---
D
-----
D
L
Q
D
W
L
F
V
L
L
T
Q
L
-----
L
K
------
K
M
G
A
D
L
L
G
S
V
Q
-
A
K
V
Q
K
A
------
L
D
I
--
T
R
E
S
F
P
N
D
L
Q
F
N
I
L
M
R
F
T
V
DQT
Q
T
P
S
L
K
V
K
V
A
I
L
-------------
K
Y
I
----
E
T
L
A
K
Q
M
D
P
R
D
F
T
N------
S
S
E
T
R
L
A
V
S
R
V
I
----------
T
W
---
T
T
EP
K
S
S
D
V
R
K
A
A
Q
S
V
L
I
S
L
F
E
L
-
N
T
P
E
F
T
M
L
L
G
A
L
P
K
T
F
Q
D
G
A
T
K
L
L
HN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
48.19
14%
0
- C- -
1FJG
97
RS4_THET8
D:
[2-209]
---GRYIGPVCRLCRREGVK
L
Y
L
K
G
E
R
C
Y
S
P
K
C
A
M
E
R
R
P
Y
P
-----------
P
G
Q
H
G
Q
-----
K
R
A
R
------
R
P
S
D
---
Y
-
A
-
V
R
L
R
E
K
Q
K
L
R
R
I
Y--
G
-----
I
S
E
R
Q
F
R
N
L
F
E
E
A
-----
S
K
KKGVTG
S
-
V
F
L
G
L
L
E
S
R
-
L
D
N
V
V
Y
RLGFAV
S
R
R
--
Q
A
R
Q
L
V
R
H
G
H
I
T
V
----------
N
G
R
R
V
D
L
P
----------------
S
Y
R
----
V
R
--
P
G
-
D
E
I
A
V
A
-------
E
K
S
R
N
L
E
L
I
R
Q
N
LEAMKGRKVG
P
W
---
L
---
S
L
D
V
--
E
G
M
K
G
K
F
L
R
L
P
D
R
E
D
L
A
L
-
P
-
V
Q
E
N
L
V
I
E
F
YSR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
45.87
12%
-85
* C6 *
4B7Y
2
MSL2_HUMAN
C:
[1-115]
--------------------
M
N
P
V
N
A
T
A
L
Y
I
S
A
S
R
L
V
L
N
-
Y
--------------------------------------------------------------------------
D
P
G
-----
D
P
------
K
-
A
F
T
E
I
N
R
L
L
-
P
Y
F
R
Q
S
------
L
S
C
--
C
V
C
G
H
L
L
Q
D
P
I
A
------------
P
T
N
S
T
C
Q
----------------
H
Y
V
----
C
K
T
C
K
G
-
K
K
M
M
M
K
-------
P
S
C
S
W
C
K
D
Y
E
Q
F
----------
E
E
-------------
N
K
Q
L
S
I
L
V
N
C
Y
K
K
-
L
C
E
Y
-
I
-
T
Q
T
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
42.51
15%
81
* C5 *
3DKQ
9
Y3634_SHEB5
A:
[14-243]
------NLYFQGM
L
I
E
I
P
NV
F
S
K
Q
E
V
S
H
L
R
E
Q
L
D
A
R
R
W
I
-
D
G
NQTSGAMATT
R
K
R
N
Q
Q
L
DKDD
P
V
A
V
------
A
L
G
Q
---
Q
-
I
M
D
R
L
L
A
H
P
Q
F
V
S
A
A
LP
L
-----
Q
F
Y
P
P
L
F
N
R
Y
Q
G
G
E
T
F
G
Y
H
I
------
D
-
N
A
I
R
S
T
P
D
G
M
I
R
T
D
L
S
------
A
T
L
F
L
S
E
P
E
N
Y
Q
G
G
E
L
V
I
----------
Q
D
T
Y
G
Q
Q
S
I
K
L
S
AG
S
L
V
L
Y
P
SSSL
H
Q
V
----
T
P
V
L
S
G
-
E
R
T
A
A
F
M
W
L
Q
S
MV
R
D
E
G
Q
R
R
L
L
F
Q
L
----------
D
Q
---
S
---
I
Q
S
L
T
A
Q
T
A
A
E
Q
E
L
F
N
L
S
G
-
V
Y
H
N
-
L
-
L
R
R
W
S
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.95
15%
-348
- C7 -
3M91
-
PUP_MYCTU
B:
[35-47]
------------------------
E
T
D
D
L
L
D
E
I
D
D
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.78
38%
-94
- C4 -
4LGN
4
?
A:
[123-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
P
G
R
G
M
G
-
E
R
L
A
V
D
-------
P
N
N
D
N
---
I
L
Y
F
----------
G
A
---
P
---
S
G
K
G
L
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
34.78
31%
-
- C- -
1P9I
-
?
A:
[3-31]
------------------------
Q
L
N
A
L
L
A
S
L
E
A
E
N
K
Q
-------------
L
K
A
K
V
E
-----
E
L
L
A
------
K
V
G
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
33.66
6%
21
- C- -
4KE2
-
ANPM_PSEAM
A:
[0-195]
----MNID
P
A
A
R
A
A
A
A
A
A
A
S
K
A
A
V
T
A
A
D
A
A
A
A
A
A
T
I
A
A
S
-
A
-----------
A
S
V
A
A
A
-----
T
A
A
D
------
D
A
A
A
---
S
-
I
-
A
T
I
N
A
A
S
A
A
A
K
S
---
I
-----
A
A
A
A
A
M
A
A
K
D
T
A
A
-----
A
A
------
A
-
S
A
A
A
A
A
V
A
S
-
A
A
K
A
L
E
------
T
I
N
--
V
K
A
A
Y
A
A
A
T
T
A
N
T
----------
A
A
A
A
A
A
A
T
----------------
A
T
T
----
A
A
A
A
A
A
-
A
K
A
T
I
D
-------
N
A
A
A
A
K
A
A
A
V
A
T
----------
A
V
---
S
---
D
A
A
A
T
A
A
T
A
A
A
V
A
A
A
T
L
E
A
-
A
A
A
K
-
A
-
A
A
T
A
V
S
A
A
A
A
A
A
A
A
A
I
A
F
A
A
AP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
33.63
29%
-
- C- -
1P9I
-
?
A:
[6-12]
---------------------------
A
L
L
A
S
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
32.02
28%
-4
- C7 -
4QDC
1
?
A:
[335-383]
-------------------------------------------------------
Q
L
R
-----
R
W
Y
Q
------
Q
F
Y
V
---
D
-
V
-
E
D
I
T
E
D
M
T
K
R
F
E
F
--
E
-----
I
D
T
T
R
A
V
A
S
W
Q
K
E
-----
V
A
------
E
-
N
L
A
K
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.83
18%
-290
- C2 -
3M9D
-
PUP_MYCTU
G:
[35-45]
------------------------
E
T
D
D
L
L
D
E
I
D
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
31.45
28%
18
- C7 -
4QDF
1
?
A:
[335-384]
-------------------------------------------------------
Q
L
R
-----
R
W
Y
Q
------
Q
F
Y
V
---
D
-
V
-
E
D
I
T
E
D
M
T
K
R
F
E
F
--
E
-----
I
D
T
T
R
A
V
A
S
W
Q
K
E
-----
V
A
------
E
-
N
L
A
K
Q
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
31.18
29%
-16
- C3 -
1M06
3
VGJ_BPAL3
J:
[1-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
A
----------------
R
R
S
----
P
S
R
R
K
G
-
A
R
L
W
Y
V
-------
G
G
S
Q
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
30.77
28%
17
- C7 -
4QDD
-
?
A:
[335-383]
-------------------------------------------------------
Q
L
R
-----
R
W
Y
Q
------
Q
F
Y
V
---
D
-
V
-
E
D
I
T
E
D
M
T
K
R
F
E
F
--
E
-----
I
D
T
T
R
A
V
A
S
W
Q
K
E
-----
V
A
------
E
-
N
L
A
K
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
26.33
7%
-96
* C7 *
4WZX
-
E:
[7-20]
-----------------------
I
D
F
D
D
L
S
R
R
F
E
E
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
25.61
7%
-76
- C7 -
3W8H
-
B:
[34-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
E
E
L
E
N
A
F
S
L
A
E
E
S
C
P
G
-
I
S
D
K
-
L
-
M
V
H
L
V
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------