@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu26480: (2016-07-11 )
MVYFVAFFCFAITLHNIEEAIWLPEWSQQSSKFQKPVTSNEFHFAVIVITMLAYLSAFGFLYMPESDIAKWIFIGFLGSMVINAIFPHLIATVVMKKYAPGLLTGLLLNIPVNSLVIYQMFLKNLIVWKELIISTLVVGIILLALIPLLFKVGDKVSP
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-----.10........-----------20----...-----.....---.-30...-..---...-40........----50...--.-----------....60.--..-------....------.-70...--------....-----.80........90.-----.......100.---------........----110.......120------....-....130.--....--------.--.140.---......150-......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
Y
F
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A
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C
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N
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A
-----IWL-----PEW
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Q
---Q-SSKFQ-KP---VTS-NE
F
H
F
A
V
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----
T
M
L
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L
-----------
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Y--M
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------
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-
K
W
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--------
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-----
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-----
V
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M
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KYA
P
--
G
---------
L
L
T
G
L
L
LN----IP
V
N
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Q
M
F
-------
L
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N
L
-
I
V
W
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--
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--------
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--
G
I
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L
L
---
A
L
I
P
L
L
F
K
V-GDKVSP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
73.18
19%
-48
- C5 -
3KMQ
2
?
A:
[1-476]
GLIV
D
T
R
D
V
EERVHVMRKTK
L
A
P
T
V
A
H
G
V
FNPEFGPAALSNKDPRLNEGVV
L
D
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SKHKSD
T
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D
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W
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YR
N
V
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T
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---------------------------
T
M
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--------
Y
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D
L
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---
A
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F
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-
G
Q
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R
H
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F
Y
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M
A
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Y
L
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N
A
V
C
G
D
A
A
A
L
E
H
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
60.21
17%
-111
- C6 -
4C47
-
?
A:
[23-213]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
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A
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V
E
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M
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-----------
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---
Q
-
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----
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-------
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D
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--------
S
Q
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-----
Y
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I
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-----
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---------
V
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I
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A
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A
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-
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NNLK
Y
L
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I
G
I
D
MENVIFD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
58.10
12%
-70
- C3 -
4HTP
1
DNLI4_HUMAN
A:
[7-237]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SQT
V
A
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H
V
P
F
A
-----
D
L
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R
A
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I
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-----
E
F
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-----
D
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---
F
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---
H
K
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P
A
M
R
----
L
I
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Q
--
L
ERERMAYGIK
E
T
M
L
A
K
L
Y
--
I
E
L
L
NLPRD
G
K
D
A
------
L
-
K
L
L
N
Y
--------
G
D
F
A
-----
M
I
A
Y
F
V
L
K
P
R
C
L
Q
K
GSLT
I
Q
Q
V
N
D
L
L
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--
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---------
I
A
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N
N
S
A
K
----
R
K
D
L
I
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L
L
Q
L
-------
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T
Q
S
S
A
L
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K
W
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I
--
R
M
I
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KDLKLGVS
Q
--
Q
T
I
F
S
---
V
F
H
N
D
A
A
E
L
-
H
N
V
T
T
D
L
E
K
V
C
R
Q
L
HDPSVGLSD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
55.85
18%
-51
- C6 -
5EK8
2
?
A:
[1-668]
----------------------------------------------------------------------------------------------------------------------------------------M
S
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A
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VSKTQEAITKPIEQ
L
N
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A
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Q
L
L
F
SDTNKPLHN
I
E
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W
D
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A
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---
R
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I
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Q
-
K
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F
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T
L
T
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----
P
Y
W
P
Y
DP
N
-----------
S
P
F
A
R
I
F
--
M
P
-------
N
P
E
E
TPDDYS
V
-
G
R
K
F
Q
--------
A
Y
A
S
-----
A
N
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L
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P
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A
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A
D
----
Y
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P
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N
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-------
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G
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-
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--
L
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--------
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--
G
--------
M
N
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L
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Y
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DG
K
L
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P
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M
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R
YPDSLAPHSPLKD
R
E
V
Y
T
PNDG
E
K
W
L
Q
A
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R
I
F
R
T
A
A
L
F
D
G
E
A
IEHYAKAH
V
Q
M
E
Q
Y
A
V
A
C
F
R
NLRKNPIRLMLTPHLKS
I
I
N
I
N
R
R
G
DDLLVEPNLG
L
F
V
T
N
GPLT
Y
P
G
F
L
Q
M
C
T
E
V
V
A
T
YDWKD
W
Q
P
R
Q
P
ICDDH
K
Y
A
K
A
A
N
L
Y
W
Q
I
L
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E
Y
V
D
A
F
F
A
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Q
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A
I
A
D
E
W
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E
I
R
R
F
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D
L
V
E
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SMPYQPIEGIMANTDSDYEWYDTGELDKPDL
P
R
A
T
F
NGKTKVIRPITNSNQPS
A
T
D
I
D
N
L
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Q
C
C
R
H
I
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F
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T
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L
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SDEGGELAYNSLALRNGSFGSETDPNIAPD
P
I
E
A
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N
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V
Y
I
F
S
V
L
N
G
IKYGLLVKNEDDDVP
E
E
L
R
T
A
L
L
N
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D
Q
F
A
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L
GIDIGNIRTLINI
19
Fugue
51.90
11%
-59
- C- -
4AE7
-
ACO15_HUMAN
A:
[52-247]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKDYALPNASW
C
S
D
M
L
S
L
Y
-----
Q
E
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L
E
K
T
K
S
S
G
-----------
W
-----
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K
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-----
P
S
F
K
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---
N
-
R
D
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-
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L
---
K
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P
-
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--
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F
Q
--
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T
-------
Q
K
K
S
------
V
-
C
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P
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SYLEGPP
G
F
A
H
-----
G
G
S
L
A
A
M
M
D
E
T
F
S
K
-----
T
A
F
L
A
G
E
G
--
L
---------
F
T
L
S
L
N
I
R
F
K
N
L
I
P
V
D
S
L
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M
D
V
E
-------
V
D
K
I
-
E
D
Q
K
L
Y
M
S
--
C
I
A
H
--------
S
RD
Q
Q
T
V
Y
---
A
K
S
S
G
V
F
L
Q
-
L
Q
L
E
E
E
S
PQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
51.65
16%
-98
- C4 -
4DMI
3
?
A:
[4-176]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
R
I
D
S
E
S
I
R
D
K
L
N
T
L
L
P
S
Q
-----
S
R
L
S
G
S
T
T
I
I
P
-----------
V
-----
V
D
L
-----
T
E
T
A
E
GGA
Q
-
R
E
D
L
Q
-
K
A
---
F
T
L
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N
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D
F
D
V
E
N
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----
T
T
T
I
A
--
N
-----------
T
P
--------------------------
G
-
F
Y
K
V
V
--------
G
N
L
S
-----
S
R
D
E
A
S
G
A
I
A
V
I
E
V
T
DG--
I
T
T
K
I
L
A
N
--
N
---------
R
I
V
S
P
D
G
T
----
T
A
V
Q
S
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P
V
P
F
D
L
-------
M
V
K
L
-
V
A
G
D
T
L
Q
A
--
R
S
N
N
--------
A
--
E
V
R
V
Q
---
G
I
A
R
Q
I
A
D
V
S
G
N
L
I
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
45.87
23%
-452
- C6 -
2M3E
-
ITAL_HUMAN
A:
[1064-1089]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
Y
L
Y
V
L
--
S
G
I
G
--------
G
--
L
L
L
L
L
---
L
I
F
I
V
L
Y
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.29
33%
-231
- C2 -
4YXP
-
ICP27_HHV11
A:
[222-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
H
F
Y
L
P
--
G
---------
A
C
M
A
G
L
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
42.26
11%
0
- C- -
2HRA
32
SYEC_YEAST
A:
[19-198]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
S
T
L
T
I
-----
N
G
K
A
P
I
V
A
Y
A
E
-----------
L
-----
I
A
A
-----
R
I
V
N
A
---
L
A
P
N
S
I
A
-
I
K
---
L
V
D
-
D
K
K
A
P
A
A
K
L
D
DATE
D
V
F
N
K
--
I
-----------
T
S
K
F
A
A
I
--
F
D
NGD----
K
E
Q
V
------
A
-
K
W
V
N
L
--------
A
Q
K
E
LVIKN
F
A
K
L
S
Q
S
L
E
T
L
D
S
Q
-----
L
N
L
R
T
F
I
L
--
G
GLKYS
A
A
D
V
A
C
W
G
A
L
R
S
----
N
G
M
C
G
S
I
I
K
N
K
V
-------
D
V
N
V
-
S
R
W
Y
T
L
L
E
M
D
P
I
F
G
--------
E
--
A
H
D
F
L
---
S
K
S
L
L
E
L
K
K
-
S
A
N
V
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.65
24%
0
- C- -
5DGY
-
?
A:
[218-964]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
F
F
-----
C
Y
G
Q
L
V
F
T
V
K
E
-----------
A
-----
A
A
Q
-----
Q
Q
E
S
A
---
T
-
T
Q
K
A
E
-
K
E
---
V
T
R
---------------
M
V
I
I
Y
--
V
-----------
I
A
F
L
I
C
W
--
V
P
-------
Y
A
S
V
------
A
-
F
Y
I
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.65
24%
0
- C- -
4ZWJ
-
ARRS_MOUSE (first)
A:
[218-1964]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
F
F
-----
C
Y
G
Q
L
V
F
T
V
K
E
-----------
A
-----
A
A
Q
-----
Q
Q
E
S
A
---
T
-
T
Q
K
A
E
-
K
E
---
V
T
R
---------------
M
V
I
I
Y
--
V
-----------
I
A
F
L
I
C
W
--
V
P
-------
Y
A
S
V
------
A
-
F
Y
I
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.99
22%
-174
- C6 -
2K1A
-
ITA2B_HUMAN
A:
[965-991]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
W
W
V
L
V
--
G
V
L
G
--------
G
--
L
L
L
L
T
---
I
L
V
L
A
M
W
K
V
-
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.01
19%
-243
- C6 -
2KNC
-
A:
[965-990]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
W
W
V
L
V
--
G
V
L
G
--------
G
--
L
L
L
L
T
---
I
L
V
L
A
M
W
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
38.76
22%
13
* C6 *
1WJA
1
POL_HV1Y2
A:
[1-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
D
G
I
D
K
-----------
A
QEEHE
K
Y
H
-----
S
N
W
R
A
---
M
-
A
S
D
F
N
L
P
P
---
V
V
A
-
K
E
I
V
A
S
C
D
K
C
----
Q
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.22
25%
-191
- C6 -
2L8S
-
A:
[7-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
L
W
V
I
L
L
--
S
A
F
A
--------
G
--
L
L
L
L
M
---
L
L
I
L
A
L
W
K
I
-
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
34.05
26%
36
- C6 -
4A4M
4
OPSD_BOVIN
A:
[221-277]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
F
F
-----
C
Y
G
Q
L
V
F
T
V
K
E
-----------
A
-----
A
A
Q
-----
Q
Q
E
S
A
---
T
-
T
Q
K
A
E
-
K
E
---
V
T
R
---------------
M
V
I
I
Y
--
V
-----------
I
A
F
L
I
C
W
--
L
P
-------
Y
A
G
V
------
A
-
F
Y
I
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
30.02
5%
-215
- C6 -
2Y69
-
COX8B_BOVIN
M:
[48-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
F
L
L
-----
P
A
G
W
V
L
Y
H
L
D
N
-----------
Y
-----
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
28.21
50%
102
- C1 -
2LQ1
-
?
A:
[5-14]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
S
P
--
G
---------
L
S
T
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
17.59
12%
372
- C6 -
3RA3
-
?
B:
[3-27]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
L
K
Q
---
K
-
N
A
R
L
K
-
Q
E
---
I
A
A
-
L
E
Y
E
I
A
A
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
0.22
6%
0
- C- -
1V54
-
COX8B_BOVIN
M:
[24-41]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
F
L
L
-----
P
A
G
W
V
L
Y
H
L
D
N
-----------
Y
-----
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------