@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu26920: (2016-07-12 )
MTKLKMLSMLTVMIASLFIFSSQALAVQYFTVSTSSGAPVNMRSGPGTNYPIMLSIPSGSRVPYYCYAYGTTVTGKYGTSNIWDQIQWKDSRGVVNIGYVSDTYVYTGSDGPVGYKCN
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30..------......40..-......50---------------.....-..-..60...---------.....70........80..--....--..--.-90--........100.......110......---------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
K
L
K
M
L
S
M
L
T
V
M
I
A
S
L
F
I
FSSQ
A
L
A
V
Q
Y
F
T
V
S------TSSGAPVNMR-SGPGTNY----------------
P
I
M
L
S-IP-SGSRV
P
Y
---------
Y
C
Y
A
YG
T
T
V
TGKYGTS-N
I
--
W
D
Q
I
--
Q
W--K-DS--R
G
V
V
N
I
G
Y
V
S
D
T
Y
V
Y
TGSDGPVGYKCN---------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.68
25%
-93
- C4 -
4HP8
2
?
A:
[99-187]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
D
W
D
E
V
M
D
V
N
L
K
A
L
F
-
F
T
T
Q
A
F
A
K
E
L
L
A
K
G
---------------
R
-
S
G
K
V
V
N
I
----------------
A
S
L
L
S
-
F
Q
-
G
G
I
R
V
P
S
---------
Y
T
A
A
-------
K
H
G
V
A
-
G
L
--
T
K
L
L
A
N
E
W
--
A
--
A
--
K
G
-
I
N
V
N
A
I
A
P
G
Y
I
E
T
--------------------------------------------------------------------------------------------------------------------
49
Fugue
62.90
22%
-2
- C6 -
4KRT
10
?
A:
[7-353]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
H
H
H
H
M
Q
SRNNN
N
L
K
G
I
D
V
S
NWKGNIN
F
E
S
V
K
N
D
GVE
V
V
Y
I
K
A
T
EGNYFKDKY
A
K
Q
N
Y
E
G
A
K
E
Q
G
L
S
V
G
F
Y
H
FFRANKG
A
K
D
Q
A
N
F
F
I
D
Y
L
N
E
I
GAVNYDCKLALDIETTEGVG
V
R
D
L
T
S
M
C
I
E
F
L
E
E
V
K
R
L
T
G
K
E
V
V
V
Y
T
Y
T
S
F
A
N
N
NLDSRLGNYPVW
I
A
H
Y
GVNTPGANNIWSSWVGFQYSEN
G
S
V
A
G
V
N
G
G
C
D
M
N
E
F
T
E
E
I
F
I
D
S
S
N
F
N
L
D
N
A
T
T
K
N
------
V
S
T
--
K
L
N
I
R
-
A
K
G
T
T
N
S
----------------
K
I
I
G
S
-
I
P
-
A
G
E
--------------------
T
F
K
I
K
W
V
D
E
-
D
Y
LG
W
Y
Y
V
--
E
Y
--
N
-
G
V
--
V
G
Y
V
N
A
D
Y
V
E
K
L
Q
M
A
T
T
Y
N
V
S
T
F
L
N
V
R
EEGSLNSRIV
D
K
I
N
SG
D
I
F
R
IDWVDSDFIGWYRITTKNG
K
V
G
F
V
N
AEFVKKL-----------------------------------------------------
31
HHSearch
61.90
26%
-112
- C6 -
4KRT
2
?
A:
[229-286]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
K
L
N
I
R
-
A
K
G
T
T
N
S
----------------
K
I
I
G
S
-
I
P
-
A
G
E
T
F
K
I
---------
K
W
V
D
---------
E
D
Y
-
L
G
--
W
Y
Y
V
--
E
Y
--
N
-
G
V
--
V
G
Y
V
N
A
D
Y
V
E
K
L
------------------------------------------------------------------------------------------------------------------------
27
HHSearch
60.75
26%
-88
- C6 -
2KT8
-
?
A:
[10-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
S
L
N
V
R
-
E
G
A
S
T
S
S
----------------
K
V
I
G
S
-
L
S
-
G
N
T
K
V
T
I
---------
V
------------
G
E
E
-
G
A
--
F
Y
K
I
--
E
Y
--
K
-
G
S
--
H
G
Y
V
A
K
E
Y
I
K
D
-------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.37
23%
-96
- C6 -
2KRS
-
?
A:
[9-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
N
M
R
-
S
G
P
G
S
N
Y
----------------
G
V
I
G
T
-
L
R
-
N
N
D
K
V
E
I
---------
I
K
E
V
D
G
---------------
W
Y
E
I
--
R
F
--
N
-
G
K
-------
V
G
Y
A
S
K
S
Y
I
T
I
V
N
E
G
S
L
--------------------------------------------------------------------------------------------------------------
51
Fugue
55.00
18%
-38
- C7 -
1K45
-
?
A:
[1-168]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLVANINGGFESTPAGVVTDLAEGVEG
W
D
L
N
V
G
S
S
V
T
N
P
P
V
F
E
V
L
E
T
S
D
A
P
E
G
N
K
V
L
A
V
T
V
N
G
V
G
NNPWD
I
E
A
T
A
F
P
V
N
V
R
-
P
G
V
T
Y
T
Y
----------------
T
I
W
A
R
-
A
E
Q
D
G
A
V
V
S
F
T
V
G
N
QSFQE
Y
G
R
L
H
E
Q
Q
I
T
T
E
W
Q
P
F
-
T
F
--
E
F
T
V
--
S
D
--
Q
-
E
T
V
I
R
A
P
I
H
F
G
Y
A
A
N
V
G
N
T
I
Y
I
D
G
L
A
I
A
S
Q
P
---------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.24
23%
-200
- C5 -
1VGF
-
?
A:
[96-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
L
A
A
I
I
L
N
T
F
T
N
L
E
E
E
S
S
S
G
F
L
Q
F
N
------
T
N
-----
N
V
K
-
K
N
S
S
W
E
Y
----------------
R
V
L
F
S
-
V
P
-
F
G
D
N
A
P
S
---------
Y
F
Y
S
L
V
T
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.48
25%
-180
- C5 -
1VCY
1
?
A:
[110-171]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
L
G
A
I
I
L
N
T
F
T
N
L
E
E
E
S
S
S
G
F
L
Q
F
S
------
T
N
-----
N
V
K
-
K
N
S
S
W
E
Y
----------------
R
V
L
F
S
-
V
P
-
F
G
--
A
P
S
---------
Y
F
Y
S
L
V
T
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
52.34
25%
-75
- C6 -
2KRS
-
?
A:
[8-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
A
L
N
M
R
-
S
G
P
G
S
N
Y
----------------
G
V
I
G
T
-
L
R
-
N
N
D
K
V
E
I
---------
I
------------
K
E
V
-
D
G
--
W
Y
E
I
--
R
F
--
N
-
G
K
--
V
G
Y
A
S
K
S
Y
I
T
I
V
------------------------------------------------------------------------------------------------------------------------
33
HHSearch
52.20
23%
-20
- C6 -
4KRT
3
?
A:
[295-351]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
F
L
N
V
R
-
E
E
G
S
L
N
S
----------------
R
I
V
D
K
-
I
N
-
S
G
D
I
F
R
I
---------
D
W
V
D
---------
S
D
F
-
I
G
--
W
Y
R
I
--
T
T
K-
N
-
G
K
--
V
G
F
V
N
A
E
F
V
K
--------------------------------------------------------------------------------------------------------------------------
32
HHSearch
51.84
15%
-174
- C6 -
1XOV
1
?
A:
[201-255]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
S
V
P
M
L
-
S
K
M
D
F
K
S
----------------
S
P
I
K
M
-
Y
K
-
A
G
S
S
L
L
V
---------
Y
------------
E
H
N
-
K
Y
--
W
Y
K
A
--
Y
I
--
N
-
D
K
--
L
C
Y
I
Y
K
S
F
C
I
S
N
------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.46
23%
-178
- C5 -
1PP6
-
?
A:
[96-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
L
A
A
I
I
L
N
T
F
T
N
L
E
E
E
S
S
S
G
F
L
Q
F
N
------
T
N
-----
N
V
K
-
K
N
S
S
W
E
Y
----------------
R
V
L
F
S
-
V
P
-
F
G
D
N
A
P
S
---------
Y
F
Y
S
L
V
T
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
50.56
20%
-67
- C6 -
3NPF
4
?
A:
[17-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
S
V
C
N
L
R
-
E
E
G
K
F
T
S
----------------
G
M
S
T
Q
-
A
L
-
L
G
M
P
V
K
V
---------
L
------------
Q
-
Y
-
N
G
--
W
Y
E
I
--
Q
T
--
P
D
D
Y
--
T
G
W
V
H
R
M
V
I
T
P
M
------------------------------------------------------------------------------------------------------------------------
50
Fugue
49.94
19%
-16
* C7 *
3WKX
2
HYBA1_BIFL2
A:
[1-659]
M
N
V
T
I
TS
P
F
W
K
R
R
R
D
Q
I
V
E
S
V
I
P
Y
Q
W
G
V
M
N
DE
I
D
T
T
V
P
DDPAGNQ
L
A
D
S
K
SH
A
V
A
N
L
K
V
A
A
GE
L
D
D
E
F
HGMVF
Q
D
S
D
V
Y
K
W
L
E
E
A
A
Y
A
L
A
Y
HPD
P
E
L
K
A
L
C
D
R
T
V
D
L
I
A
R
A
QQSDGYLD
T
P
Y
Q
I
KSGVWADRPRFSLIQQSH
E
M
Y
V
M
G
H
Y
I
E
A
A
V
A
Y
H
Q
V
TGN
E
Q
A
L
E
V
A
K
K
M
A
D
C
L
D
A
N
F
GPEEGKIHGADGHPE
I
E
L
A
L
A
K
L
Y
E
E
TGE
K
R
Y
L
T
L
S
Q
Y
L
I
D
V
RGQDPQ
F
Y
A
K
Q
L
K
A
M
N
GDNIFHGFYKPTYFQAAEPVRDQQTADGH
A
V
R
V
G
Y
L
C
T
G
V
A
H
V
G
R
L
L
GD
Q
G
L
I
D
T
A
K
R
F
W
K
N
I
VTRRMYVTGAIGSTHVGESFTYDYDLPNDTMYGE
T
C
A
S
V
A
M
S
M
F
A
Q
Q
M
L
D
L
EPK
G
E
Y
A
D
V
L
E
K
E
L
F
NG
S
I
A
G
I
SLDGK
Q
Y
Y
YVNALETTPDGLDNPDRHHVLSHRVDWFGCACC
P
A
N
I
A
R
L
I
A
S
VDRYI
Y
T
E
R
DGGK
T
V
L
S
H
Q
FI
A
N
T
A
E
F
A
S
G
L
T
V
E
Q
R
S
N
F
P
W
D
G
----
H
V
E
Y
T
V
S
------
L
P
A
--------
S
A
T
D
S
S
V
----------------
R
F
G
L
R
-
I
P
-
G
W
S
R
G
S
Y
---------
T
L
T
V
N
G
K
P
A
V
G
S
L
E
D
G
-
F
V
--
Y
L
V
V
--
N
A
--
G
-
D
T
--
L
E
I
A
L
E
--
L
D
M
S
V
K
F
V
R
A
N
S
R
V
R
S
D
A
G
Q
V
A
V
M
R
GP
L
V
Y
C
A
E
QVDNPGDLWN
Y
R
L
A
D
GVTGAD
A
A
V
A
F
Q
ADLLG
G
V
D
T
V
D
L
P
A
V
R
E
H
ADEDDAPLYVDADE
P
R
A
G
E
P
A
T
L
R
L
V
PYYSWANR
E
I
G
E
M
R
V
F
Q
R
R
A
48
Fugue
48.48
24%
-2
- C6 -
2KQ8
-
?
A:
[1-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
G
D
Y
------
Y
I
N
A
S
A
L
N
V
R
-
S
G
E
G
T
N
Y
----------------
R
I
I
G
A
-
L
P
-
Q
G
Q
K
V
Q
---------------------
V
I
S
E
N
-
S
G
--
W
S
K
I
--
N
Y
--
N
-
G
Q
--
T
G
Y
I
G
T
R
Y
L
S
K
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.20
23%
-186
- C5 -
1PP0
2
?
A:
[96-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
K
L
A
A
I
I
L
N
T
F
T
N
L
E
E
E
S
S
S
G
F
L
Q
F
N
------
T
N
-----
N
V
K
-
K
N
S
S
W
E
Y
----------------
R
V
L
F
S
-
V
P
-
F
---
A
P
S
---------
Y
F
Y
S
L
V
T
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
47.60
13%
-2
* C6 *
3M1U
6
?
A:
[121-197]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
N
S
A
L
R
-
E
V
P
T
L
R
P
M
F
TAPTRAGQGYPFDM
F
Q
R
T
A
-
V
W
-
M
G
T
P
V
F
V
---------
G
H
A
----------
T
A
D
-
R
A
--
W
L
Y
V
--
E
T
--
A
-
F
A
--
A
G
W
M
P
A
A
D
V
A
R
-------------------------------------------------------------------------------------------------------------------------
26
HHSearch
47.20
31%
-21
- C6 -
2KQ8
-
?
A:
[9-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
A
L
N
V
R
-
S
G
E
G
T
N
Y
----------------
R
I
I
G
A
-
L
P
-
Q
G
Q
K
V
Q
V
---------
I
------------
S
E
N
-
S
G
--
W
S
K
I
--
N
Y
--
N
-
G
Q
--
T
G
Y
I
G
T
R
Y
L
S
K
-------------------------------------------------------------------------------------------------------------------------
24
HHSearch
44.11
13%
-58
- C6 -
2HBW
1
?
A:
[21-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
A
L
N
L
Y
-
D
S
P
E
C
T
S
-----------------
L
A
T
Q
-
A
A
-
V
G
R
H
L
Q
V
---------
T
------------
S
N
Q
Q
G
A
--
A
V
E
V
--
C
L
CE
D
-
D
Y
--
P
G
W
L
S
L
G
D
L
G
L
L
------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.96
33%
-14
- C5 -
3B9K
-
KACA_RAT
L:
[49-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
T
S
T
------
L
V
S
G
T
P
S
R
F
S
G
S
G
S
G
R
D
Y
----------------
T
F
S
I
S
S
V
E
-
S
E
D
I
A
S
Y
---------
Y
C
L
Q
Y
D
T
L
Y
T
F
G
A
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------