@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu27720: (2016-07-13 )
MKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTGELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKEDTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGRLKAICTEELEHGGRKMEFQYDGIFYEVLESLGEMPLPPYIKEQLDDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII
Atome Classification :
(20 SA)
.........10........20........30.....-...40........50........60........70........80........90........100.......110.-------.-------.....120.-......130..--.....140.......150.......160.......170.......180.......190.......200.......210---.......220.--......230.......240.--......250.....--..260.....-..270.......280.......290.......300.......310.......320.......330.......340-
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
K
V
D
LFDFE
L
P
E
R
L
I
A
QVPLEQRDA
S
R
L
M
V
L
DKHTG-ELT
D
S
S
F
K
H
I
I
S
F
FNEG
D
C
L
V
LNN
T
R
V
L
P
A
R
LFGTKEDTG
A
K
V
E
L
L
L
L
KQETG
D
K
W
E
T
L
A
K
P
A
K
R
VKKG
T
V
V
T
FGDG-------
R
-------
L
K
A
I
C
T
E
E
L
-
E
HGG
R
K
M
E
F
Q
Y--D
G
I
F
Y
E
V
L
E
S
LGEMPL
P
P
Y
I
K
E
QLD
D
K
E
R
Y
Q
T
V
Y
S
KEIGSAAAPTA
G
L
H
F
T
E
E
I
L
Q
Q
L
K
DKG
V
Q
I
E
F
I
T
L
H
VGLGTFR---PV
S
A
D
E
V
E
E
H
N
--
M
H
A
E
F
Y
Q
M
S
E
E
T
A
A
A
L
N
K
V
R
--ENG
G
R
I
I
S
VGTTS
T
--
R
T
L
E
T
I
AGEH-DG
Q
F
KASSG
W
T
S
I
F
IYPGY
E
F
K
AID
G
M
I
TNFHL
P
K
S
S
L
I
M
L
V
S
A
LAG
R
E
N
I
L
R
A
Y
N
H
A
V
E
E
E
YRFFSFG
D
A
M
L
II-
1
PsiBlast_PDB
83.98
100%
-109
- C6 -
1YY3
-
QUEA_BACSU
A:
[4-341]
---
D
L
F
D
F
E
L
P
E
R
L
I
A
Q
V
P
L
E
Q
R
D
A
S
R
L
M
V
L
D
K
H
T
G
-
E
L
T
D
S
S
F
K
H
I
I
S
F
F
N
E
G
D
C
L
V
L
N
N
T
R
V
L
P
A
R
L
F
G
T
K
E
D
T
G
A
K
V
E
L
L
L
L
K
Q
E
T
G
D
K
W
E
T
L
A
K
P
A
K
R
V
K
K
G
T
V
V
T
F
G
D
G
-------
R
-------
L
K
A
I
C
T
E
E
L
-
E
H
G
G
R
K
M
E
F
Q
Y
--
D
G
I
F
Y
E
V
L
E
S
L
G
E
M
P
L
P
P
Y
I
K
E
Q
L
D
D
K
E
------------
A
A
A
P
T
A
G
L
H
F
T
E
E
I
L
Q
Q
L
K
D
K
G
V
Q
I
E
F
I
T
L
H
V
G
L
G
T
F
R
----------------
M
H
A
E
F
Y
Q
M
S
E
E
T
A
A
A
L
N
K
V
R
--
E
N
G
G
R
I
I
S
V
G
T
T
S
T
--
R
T
L
E
T
I
A
G
E
H
-
D
G
Q
F
K
A
S
S
G
W
T
S
I
F
I
Y
P
G
Y
E
F
K
A
I
D
G
M
I
T
N
F
H
L
P
K
S
S
L
I
M
L
V
S
A
L
A
G
R
E
N
I
L
R
A
Y
N
H
A
V
E
E
E
Y
R
F
F
S
F
G
D
A
M
L
I
--
30
HHSearch
81.95
99%
-84
- C6 -
1YY3
-
QUEA_BACSU
A:
[4-341]
---
D
L
F
D
F
E
L
P
E
R
L
I
A
Q
V
P
L
E
Q
R
D
A
S
R
L
M
V
L
D
K
H
T
G
-
E
L
T
D
S
S
F
K
H
I
I
S
F
F
N
E
G
D
C
L
V
L
N
N
T
R
V
L
P
A
R
L
F
G
T
K
E
D
T
G
A
K
V
E
L
L
L
L
K
Q
E
T
G
D
K
W
E
T
L
A
K
P
A
K
R
V
K
K
G
T
V
V
T
F
G
D
G
-------
R
-------
L
K
A
I
C
T
E
E
L
-
E
H
G
G
R
K
M
E
F
Q
Y
--
D
G
I
F
Y
E
V
L
E
S
L
G
E
M
P
L
P
P
Y
I
K
E
Q
L
D
D
K
E
------------
A
A
A
P
T
A
G
L
H
F
T
E
E
I
L
Q
Q
L
K
D
K
G
V
Q
I
E
F
I
T
L
H
V
G
L
G
T
F
R
----------------
M
H
A
E
F
Y
Q
M
S
E
E
T
A
A
A
L
N
K
V
R
--
E
N
G
G
R
I
I
S
V
G
T
T
S
T
--
R
T
L
E
T
I
A
G
-
E
H
D
G
Q
F
K
A
S
S
G
W
T
S
I
F
I
Y
P
G
Y
E
F
K
A
I
D
G
M
I
T
N
F
H
L
P
K
S
S
L
I
M
L
V
S
A
L
A
G
R
E
N
I
L
R
A
Y
N
H
A
V
E
E
E
Y
R
F
F
S
F
G
D
A
M
L
I
--
31
HHSearch
67.30
53%
-147
- C6 -
1VKY
1
QUEA_THEMA
A:
[16-347]
---
S
E
F
D
Y
E
L
P
P
E
L
I
A
Q
E
P
V
E
P
R
D
A
S
R
L
M
V
L
H
R
K
T
Q
-
R
I
E
H
R
I
F
R
E
I
I
E
Y
L
E
P
G
D
L
L
V
L
N
V
S
K
V
I
P
A
R
L
Y
A
R
K
----
A
S
I
E
I
L
L
I
E
R
L
E
E
G
I
W
K
C
L
V
R
P
G
Q
K
V
K
K
G
T
E
L
V
I
D
E
D
---------------
L
S
A
V
C
L
G
R
G
-
E
D
G
T
R
I
L
K
F
Q
P
----
Q
D
D
R
L
I
F
E
K
G
--------------------------------
T
A
G
L
H
F
T
P
E
L
I
E
K
L
K
K
K
G
V
Q
F
A
E
V
V
L
H
V
-----------------------
H
E
E
F
Y
Q
V
P
K
E
T
V
R
K
L
R
E
T
R
--
E
R
G
N
R
I
V
A
V
G
T
T
T
V
--
R
T
L
E
T
I
A
R
-
L
-
P
-
E
Q
E
E
Y
V
G
K
T
D
L
F
I
Y
P
P
F
E
F
K
L
V
D
A
L
V
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
A
G
K
D
F
V
M
E
A
Y
R
E
A
V
K
R
R
Y
R
F
F
S
F
G
D
A
M
L
I
L
-
21
Fugue
66.75
49%
-141
- C6 -
1VKY
1
QUEA_THEMA
A:
[16-347]
---
S
E
F
D
Y
E
L
P
P
E
L
I
A
Q
E
P
V
E
P
R
D
A
S
R
L
M
V
L
H
R
K
T
Q
-
R
I
E
H
R
I
F
R
E
I
I
E
Y
L
E
P
G
D
L
L
V
L
N
V
S
K
V
I
P
A
R
L
Y
A
R
K
----
A
S
I
E
I
L
L
I
E
R
L
E
E
G
I
W
K
C
L
V
R
P
G
Q
K
V
K
K
G
T
E
L
V
I
D
E
D
---------------
L
S
A
V
C
L
G
R
G
-
E
D
G
T
R
I
L
K
F
Q
-----------------------------
P
Q
D
D
R
L
I
F
E
K
-------
G
T
A
G
L
H
F
T
P
E
L
I
E
K
L
K
K
K
G
V
Q
F
A
E
V
V
L
H
V
-----------------------
H
E
E
F
Y
Q
V
P
K
E
T
V
R
K
L
R
E
T
R
--
E
R
G
N
R
I
V
A
V
G
T
T
T
V
--
R
T
L
E
T
I
A
--
R
-
L
P
E
Q
E
E
Y
V
G
K
T
D
L
F
I
Y
P
P
F
E
F
K
L
V
D
A
L
V
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
A
G
K
D
F
V
M
E
A
Y
R
E
A
V
K
R
R
Y
R
F
F
S
F
G
D
A
M
L
I
L
-
20
PsiBlast_CBE
64.52
52%
-63
- C6 -
1VKY
1
QUEA_THEMA
B:
[16-347]
---
S
E
F
D
Y
E
L
P
P
E
L
I
A
Q
E
P
V
E
P
R
D
A
S
R
L
M
V
L
H
R
K
T
Q
-
R
I
E
H
R
I
F
R
E
I
I
E
Y
L
E
P
G
D
L
L
V
L
N
V
S
K
V
I
P
A
R
L
Y
A
R
K
---
G
A
S
I
E
I
L
L
I
E
R
L
E
E
G
I
W
K
C
L
V
R
P
G
Q
K
V
K
K
G
T
E
L
V
I
-
D
E
-------
D
-------
L
S
A
V
C
L
G
R
G
-
E
D
G
T
R
I
L
K
F
Q
P
QD
D
R
L
I
F
E
K
----
G
--------------------------------
T
A
G
L
H
F
T
P
E
L
I
E
K
L
K
K
K
G
V
Q
F
A
E
V
V
L
H
V
G
I
---------------------
H
E
E
F
Y
Q
V
P
K
E
T
V
R
K
L
R
E
T
R
--
E
R
G
N
R
I
V
A
V
G
T
T
T
V
--
R
T
L
E
T
I
A
R
L
P
-
E
Q
E
--
E
Y
V
G
K
T
D
L
F
I
Y
P
P
F
E
F
K
L
V
D
A
L
V
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
A
G
K
D
F
V
M
E
A
Y
R
E
A
V
K
R
R
Y
R
F
F
S
F
G
D
A
M
L
I
L
-
2
PsiBlast_PDB
64.09
52%
-64
- C6 -
1VKY
1
QUEA_THEMA
A:
[16-347]
---
S
E
F
D
Y
E
L
P
P
E
L
I
A
Q
E
P
V
E
P
R
D
A
S
R
L
M
V
L
H
R
K
T
Q
-
R
I
E
H
R
I
F
R
E
I
I
E
Y
L
E
P
G
D
L
L
V
L
N
V
S
K
V
I
P
A
R
L
Y
A
R
K
----
A
S
I
E
I
L
L
I
E
R
L
E
E
G
I
W
K
C
L
V
R
P
G
Q
K
V
K
K
G
T
E
L
V
I
-
D
E
-------
D
-------
L
S
A
V
C
L
G
R
G
-
E
D
G
T
R
I
L
K
F
Q
P
QD
D
R
L
I
F
E
K
----
G
--------------------------------
T
A
G
L
H
F
T
P
E
L
I
E
K
L
K
K
K
G
V
Q
F
A
E
V
V
L
H
V
-----------------------
H
E
E
F
Y
Q
V
P
K
E
T
V
R
K
L
R
E
T
R
--
E
R
G
N
R
I
V
A
V
G
T
T
T
V
--
R
T
L
E
T
I
A
R
L
P
-
E
Q
E
--
E
Y
V
G
K
T
D
L
F
I
Y
P
P
F
E
F
K
L
V
D
A
L
V
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
A
G
K
D
F
V
M
E
A
Y
R
E
A
V
K
R
R
Y
R
F
F
S
F
G
D
A
M
L
I
L
-
3
PsiBlast_PDB
58.90
45%
-17
- C6 -
1WDI
1
QUEA_THET2
A:
[4-345]
--
L
E
A
Y
D
Y
H
L
P
P
E
Q
I
A
Q
E
G
V
E
P
R
D
M
A
R
L
M
V
V
Y
R
E
G
P
F
R
V
A
H
K
R
V
R
D
L
P
E
F
L
R
P
G
D
V
L
V
F
N
E
S
K
V
I
P
A
R
L
L
A
R
K
-
P
T
G
G
K
V
E
I
L
L
V
R
E
R
------
A
L
L
G
P
A
R
K
A
P
P
G
T
R
L
L
L
L
S
P
-------
K
DLAPVPG
L
Q
A
E
V
V
A
V
E
-
E
D
------------
L
V
A
H
--
L
E
E
V
G
E
V
P
--------------------------
A
A
P
T
A
G
L
H
F
T
P
E
L
L
E
R
L
R
E
M
G
V
E
L
R
F
L
T
L
H
V
G
P
G
T
F
R
---
P
------------
M
H
A
E
P
Y
A
I
P
E
E
V
A
E
A
V
N
R
A
K
--
A
E
G
R
R
V
V
A
V
G
T
T
V
V
--
R
A
L
E
S
A
Y
R
E
G
-
V
G
V
V
-
A
G
E
G
E
T
R
L
F
I
R
P
P
Y
T
F
K
V
V
D
A
L
F
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
L
G
R
E
R
T
L
E
A
Y
R
L
A
V
A
E
G
Y
R
F
Y
S
L
G
D
A
M
L
I
L
-
32
HHSearch
57.66
46%
-15
- C6 -
1WDI
1
QUEA_THET2
A:
[3-345]
-
G
L
E
A
Y
D
Y
H
L
P
P
E
Q
I
A
Q
E
G
V
E
P
R
D
M
A
R
L
M
V
V
Y
R
E
G
P
F
R
V
A
H
K
R
V
R
D
L
P
E
F
L
R
P
G
D
V
L
V
F
N
E
S
K
V
I
P
A
R
L
L
A
R
K
P
-
T
G
G
K
V
E
I
L
L
V
R
E
R
------
A
L
L
G
P
A
R
K
A
P
P
G
T
R
L
L
L
L
S
P
KDLAPVP
G
-------
L
Q
A
E
V
V
A
V
E
-
E
D
--------------
L
V
A
H
L
E
E
V
G
E
V
P
--------------------------
A
A
P
T
A
G
L
H
F
T
P
E
L
L
E
R
L
R
E
M
G
V
E
L
R
F
L
T
L
H
V
G
P
G
T
F
R
---
P
------------
M
H
A
E
P
Y
A
I
P
E
E
V
A
E
A
V
N
R
A
K
--
A
E
G
R
R
V
V
A
V
G
T
T
V
V
--
R
A
L
E
S
A
Y
R
-
E
-
G
V
G
V
V
A
G
E
G
E
T
R
L
F
I
R
P
P
Y
T
F
K
V
V
D
A
L
F
T
N
F
H
L
P
R
S
T
L
L
M
L
V
A
A
F
L
G
R
E
R
T
L
E
A
Y
R
L
A
V
A
E
G
Y
R
F
Y
S
L
G
D
A
M
L
I
L
-
45
HHSearch
36.85
19%
-226
- C6 -
4YLM
-
?
X:
[245-265]
-------------------------------------------------
R
W
R
S
D
D
L
V
I
A
D
N
L
T
L
L
H
G
R
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
36.77
19%
-21
- C4 -
4MFL
7
?
A:
[23-345]
M
D
--------
P
E
T
V
R
I
A
L
G
L
E
E
R
T
A
A
W
L
T
E
L
D
E
L
-------
G
P
P
A
E
P
V
R
L
P
R
G
------
E
E
A
R
D
L
L
R
R
L
----
E
V
P
E
L
D
A
E
E
I
V
A
A
A
P
D
P
D
R
D
P
A
L
W
W
L
L
E
R
T
H
H
A
I
V
R
H
M
G
D
H
-------
R
-------
A
K
P
R
G
G
P
P
L
P
Y
E
G
G
A
A
A
R
Y
F
H
--
V
Y
V
F
L
A
T
V
P
A
V
R
R
F
H
A
E
R
G
I
P
D
E
V
G
W
E
T
L
T
Q
L
G
E
L
V
A
I
H
R
R
K
Y
G
Q
G
G
M
N
M
Q
W
W
T
T
Y
H
L
R
--
G
I
L
Y
R
L
G
R
L
Q
F
S
L
A
T
G
K
DG
T
P
H
L
G
L
A
V
P
E
W
G
GP
L
L
P
K
A
Y
D
E
S
L
H
R
A
R
P
F
F
D
R
H
FP
E
H
G
A
R
-
V
A
W
G
S
S
W
M
LD
P
Q
L
E
E
Y
L
T
E
D
-
S
N
I
I
Q
L
A
R
F
W
T
L
T
D
S
A
P
E
P
G
N
A
D
G
D
S
S
I
L
E
F
V
F
R
Y
N
G
--
Q
P
L
D
E
L
P
Q
R
S
S
L
E
R
A
V
I
A
H
L
K
A
G
-
R
H
W
H
M
R
T
G
F
V
K
L
P
33
HHSearch
35.51
27%
-253
- C6 -
1JR7
1
CSID_ECOLI
A:
[262-283]
-------------------------------------------------
P
V
P
V
G
K
F
L
L
I
N
N
L
F
W
L
H
G
R
D
R
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
34.88
14%
-186
- C6 -
4Y0E
2
?
A:
[267-287]
-------------------------------------------------
N
W
R
L
G
D
V
A
I
W
D
N
R
A
T
Q
H
Y
G
I
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
33.45
30%
-300
- C6 -
2Q4A
2
Y3136_ARATH
A:
[297-319]
-------------------------------------------------
P
W
Q
R
G
D
V
L
L
I
D
N
W
A
V
L
H
S
R
R
P
F
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
33.45
36%
-258
- C6 -
4OJ8
2
CARC_PECCC
A:
[255-276]
-------------------------------------------------
F
W
E
D
G
D
L
L
I
M
D
N
R
R
V
I
H
E
R
E
E
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
32.78
22%
-287
- C6 -
2WBQ
1
ARGHX_STRVI
A:
[300-322]
-------------------------------------------------
V
L
D
Q
G
D
V
A
F
I
D
N
R
R
A
V
H
G
R
R
A
F
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
32.74
14%
-160
- C6 -
4CVY
1
ATSK_MYCTU
A:
[236-256]
-------------------------------------------------
N
W
A
P
G
D
V
A
I
W
D
N
R
A
T
Q
H
R
A
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
32.54
32%
-211
- C6 -
4C5W
2
BODG_HUMAN
A:
[331-352]
-------------------------------------------------
K
M
N
P
G
D
V
I
T
F
D
N
W
R
L
L
H
G
R
R
S
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
32.24
14%
-187
* C6 *
1OIH
1
ATSK_PSEPU
A:
[248-269]
-------------------------------------------------
R
W
E
A
G
D
V
A
I
W
D
N
R
A
T
Q
H
Y
A
V
D
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
31.79
30%
-253
- C6 -
1DS1
2
CAS1_STRC2
A:
[263-285]
-------------------------------------------------
Y
L
E
P
G
D
L
L
I
V
D
N
F
R
T
T
H
A
R
T
P
F
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
31.59
30%
-289
- C6 -
4M23
-
?
A:
[287-309]
-------------------------------------------------
V
A
D
Q
G
D
V
L
F
I
D
N
H
R
A
V
H
G
R
L
P
F
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------