@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu27830: (2016-07-13 )
MGKKMTIASLILMTAGLTACGANDNAMNDTRNNGNTRPIGYYTNENDADRQGDGIDHDGPVSELMEDQNDGNRNTTNVNNRDRVTADDRVPLATDGTYNNTNNRNMNRNAANNGYDNQENRRLAAKIANRVKQVKNVNDTQVMVSDDRVVIAVKSHREFTKSDRDNVVKAARNYANGRDVQVSTDKGLFRKLHKMNNR
Atome Classification :
(20 SA)
-----------------.........10....----...--.20..---------------......30....---....40.-----...-.--...50........60-------........70....--.----...80.....-----..---------.90...---.....100----......-----..110--------------..--...-..--120--------------------...-......130---......---...140....-------.-------------.--.150----......--.------.160-------------........170..------..---------------.---..180-------.......190......------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------MGK
K
M
T
I
A
S
L
I
L
M
TA----GLT--ACGAN---------------DNAMNDTRNNGN---T
R
P
I
G
Y
Y-----TNE-N--DADRQGDGIDHDG
P
V
-------
S
E
L
M
E
DQNDGNRNT--T----NVNNRDRVTA-----DD---------RVPLAT---DGTYNNT-----NNRNMN-----RNAAN--------------NG--YD
N
-
Q
E
--
N
----------------------
R
R
L
-
A
A
K
I
A
N
R
-----
V
K
Q
V
KN---VND
T
Q
V
M
VSD-------
D
-------------
R
--
V
V
I
-----
A
VKS
H
R
--
E
------FTK--------------S
D
R
D
N
V
V
K
A
A
R
NY------AN---------------G---
R
D
V
Q
V-------ST
D
K
G
L
F
R
K
L
H
K
MNNR------------------------------------
30
HHSearch
57.50
11%
16
- C2 -
2Y9J
-
PRGK_SALTY
Y:
[104-186]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
--
Y
----------------------
S
A
I
-
E
Q
R
L
E
Q
S
-----
L
Q
T
M
E
G
---
V
L
S
A
R
V
H
I
S
Y
-------
D
IDAGENGRPPKPV
H
--
L
S
A
-----
L
A
V
Y
E
R
--
G
S-----
P
L
A
--------------
H
Q
I
S
D
I
K
R
F
L
K
N
S
------
F
A
---------------
D
VDY
D
N
I
S
V
-------
V
---------------------------------------------------
29
HHSearch
56.28
16%
3
- C2 -
1YJ7
2
?
A:
[86-166]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
--
N
----------------------
Y
L
K
-
E
Q
D
I
E
R
L
-----
L
S
K
I
P
G
---
V
I
D
C
S
V
S
L
N
V
-------
S
-------------
S
--
A
A
V
-----
L
V
I
S
S
P
--
E
VN----
L
A
P
--------------
S
-
V
I
Q
I
K
N
L
V
K
N
S
------
V
D
DLK------------
L
---
E
N
I
S
V
-------
V
I
K
S
S
-----------------------------------------------
67
Fugue
55.55
13%
64
* C4 *
4ZFL
2
EGTC_MYCS2
A:
[1-229]
-----------A
R
H
V
A
W
L
G
A
P
R
S
L
A
D
L
V
L
D
P
P
Q---
G
L
L
--
V
Q
S
Y
A
---------------
P
R
R
Q
K
H
G
L
M
N
A
D
---
G
W
G
A
G
F
F
-----
D
D
D
-
G
V
A
R
R
W
R
S
D
K
P
L
W
G
D
A
S
F
-------
A
S
V
A
P
A
L
R
S
R
C
V
V
A
--
A
V
R
S
A
T
I
G
M
P
I
E
P
S
A
SAPFS
D
G
---------
Q
W
L
L
S
H
---
N
G
L
V
D
R
G
VLPLT
G
A
A
E
S
T
-----
V
D
S
A
I
--------------
L
A
--
A
L
I
-
F
S
R
G
L
----------------------
D
A
L
-
G
A
T
I
A
E
V
-----
G
E
L
D
P
N
---
A
R
L
N
I
L
A
A
N
G
-------
S
-------------
R
--
L
L
A
-----
T
T
W
G
D
T
--
L
------
S
V
L
--------------
R
R
P
D
G
V
V
L
A
S
E
P
Y
DDDPG
W
S
D
---------------
I
---
P
D
R
H
L
-------
V
D
V
R
D
A
H
V
V
V
T
P
L
L
E
H
------------------------------------
19
HHSearch
51.29
18%
67
- C2 -
3H90
4
FIEF_ECOLI
A:
[206-279]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
-
R
Q
E
I
I
D
I
-----
V
T
S
W
P
G
VSG
A
H
D
L
R
T
R
Q
S
G
-------
P
-------------
T
--
R
F
I
-----
Q
I
H
L
E
M
E
D
S
LP
L
V
--
Q
A
H
--------------
M
V
A
D
Q
V
E
Q
A
I
L
R
R
------
F
P
---------------
G
---
S
D
V
I
I
-------
H
Q
D
P
------------------------------------------------
74
Fugue
50.72
14%
84
- C4 -
2VDW
-
MCES_VACCW
B:
[1-287]
M
D
E
I
V
K
N
I
R
E
G
T
H
V
L
L
P
F
Y
E
T
L
P
E
L
N
L
S
L
G
K
S
----
P
L
P
S
L
E
Y
G
A
N
---------------
Y
F
L
Q
I
S
R
V
N
D
L
N
R
MP
T
D
M
L
K
L
F
-----
T
H
D
I
M
--
L
P
E
S
D
L
D
K
V
Y
E
I
L
K
I
-------
N
S
V
K
Y
Y
G
R
S
T
K
A
D
A
V
V
A
----
D
L
S
A
R
N
K
L
F
K
-----
R
E
---------
R
D
A
I
K
S
---
T
E
N
N
L
Y
I
-----
S
D
Y
K
M
L
TFDVF
R
P
L
F
D
FVNEK
Y
C
I
I
KLPTL
F
G
--
R
G
V
-
I
D
--
T
----------------------
M
R
I
-
Y
C
S
L
F
K
N
-----
V
R
L
L
K
C
---
V
S
D
S
W
L
K
--
D
-------
S
-------------
A
--
I
M
V
-----
A
S
D
V
C
K
--
K
------
N
L
D
--------------
L
F
M
S
H
V
K
S
V
T
K
S
S
------
S
W
---------------
K
---
D
V
N
S
V
Q
F
S
I
L
NN
P
V
D
T
E
F
I
N
K
F
L
E
F
S
N
R
V
Y
E
A
L
Y
Y
V
H
S
L
L
Y
S
S
M
T
SDSKSIEN
K
H
Q
R
R
L
V
K
L
LL
69
Fugue
50.66
10%
66
* C3 *
1D9E
2
KDSA_ECOLI
A:
[1-284]
---MKQ
K
V
V
S
I
GD
I
N
V
A
N
D
L
P
F
V
L
F
G
G
M
N
V
L
E
----
S
R
D
--
L
A
M
R
I
---------------
C
E
H
Y
V
T
V
T
Q
K
L
G
---
I
P
Y
V
F
K
A
S
FDKA
N
R
S
-
S
--
I
H
S
Y
R
G
P
G
L
E
E
G
M
K
I
-------
F
Q
E
L
K
Q
T
F
-
G
V
K
I
I
--
T
----
D
V
H
E
P
S
Q
A
Q
P
-----
V
A
---------
D
V
V
D
V
I
---
Q
L
P
A
F
L
A
-----
R
Q
T
D
L
V
-----
E
A
M
A
K
--------------
T
G
A
V
I
N
V
-
K
K
--
P
----------------------
Q
F
V
S
P
G
Q
M
G
N
I
-----
V
D
K
F
K
E
---
G
G
N
E
K
V
I
L
C
D
RGANFGY
D
-------------
N
--
L
V
V
-----
D
M
L
G
F
S
--
I
------
M
K
K
V
S
GN
S
P
V
I
F
DVTHA
L
Q
R
A
Q
V
A
E
L
A
R
A
G
------
M
A
V
GLA
G
L
F
I
E
A
H
PDPE
P
---
S
A
L
P
L
-------
A
K
L
E
P
F
L
K
Q
M
K
A
I
D
D
L
V
K
G
FEELDTSK-------------------------
27
HHSearch
49.72
11%
-49
- C2 -
4OYC
-
PRGK_SALTY
A:
[104-173]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
--
Y
----------------------
S
A
I
-
E
Q
R
L
E
Q
S
-----
L
Q
T
M
E
G
---
V
L
S
A
R
V
H
I
S
Y
----------------------
V
H
L
S
A
-----
L
A
V
Y
E
R
--
G
S-----
P
L
A
--------------
H
Q
I
S
D
I
K
R
F
L
K
N
S
------
F
A
---------------
D
VDY
D
N
I
S
V
-------
V
---------------------------------------------------
56
HHSearch
49.37
21%
-180
- C2 -
2L3M
-
?
A:
[18-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
C
-
V
N
A
I
E
S
S
-----
V
K
E
L
N
G
---
V
E
Q
V
K
V
Q
L
A
E
-------
G
-------------
T
--
V
E
V
-----
T
I
D
S
------------------------------------------------------------------------------------------------------------------------------------
75
Fugue
47.86
16%
39
- C3 -
2NIP
1
NIFH1_AZOVI
A:
[1-286]
-----A
M
R
Q
C
A
I
Y
G
K
G
G
I
G
K
S
T
T
T
Q
N
L
V
A
A
L
A
E
M
G
K
K
V
M
--
I
V
G
C
D
PKADSTRLILHSKAQ
N
T
I
M
E
M
A
A
E
A
G
T
---
V
E
D
L
E
L
E
-----
D
V
L
-
K
--
A
G
Y
G
G
V
K
C
V
E
S
G
G
P
E
PGVGCAG
R
G
V
I
T
A
I
N
F
L
E
E
E
G
--
A
----
Y
E
D
D
L
D
F
V
F
Y
-----
D
V
LGDVVCGGF
A
M
P
I
R
E
NKA
Q
E
I
Y
I
V
C
-----
S
G
E
M
M
A
-----
M
Y
A
A
N
--------------
N
I
--
S
K
G
-
I
V
--
K
Y
ANSGSVRLG
G
L
I
C
NSRNTDR
E
D
E
L
-
I
I
A
L
A
N
K
L
GTQM
I
H
F
V
P
R
---
D
N
V
V
Q
R
A
E
I
R
-------
R
-------------
M
--
T
V
I
-----
E
Y
D
P
K
A
--
K
------
Q
A
D
--------------
E
Y
R
A
L
A
R
K
V
V
D
N
--------
K
---------------
L
---
L
V
I
P
N
-------
P
I
T
M
D
E
L
E
E
L
L
M
E
F
G
I
MEVEDESIVGKTA-----------------------
1
PsiBlast_PDB
45.46
24%
-57
- C2 -
4MAG
1
?
A:
[177-259]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--------------
N
A
--
V
D
G
-
Q
E
--
N
----------------------
P
L
P
-
T
I
K
T
M
K
F
-----
Y
E
V
Q
K
N
---
L
A
M
T
H
H
I
V
N
D
-------
Q
-------------
M
--
V
I
I
-----
S
E
S
T
W
Q
--
K
------
L
S
D
--------------
T
D
K
D
I
I
Q
K
A
V
Q
K
V
------
G
D
---------------
A
---
H
T
Q
T
V
-------
K
T
Q
E
A
E
L
V
S
F
F
K
----------------------------------------
66
HHSearch
45.17
12%
-178
- C- -
1OSD
-
?
A:
[17-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-
P
I
T
V
K
K
A
-----
I
S
K
V
E
G
---
V
S
K
V
D
V
T
F
E
T
-------
R
-------------
Q
--
A
V
V
-----
T
F
D
D
------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
45.12
13%
70
- C2 -
3J1Z
-
?
P:
[214-291]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
T
-
R
Q
R
I
K
L
I
-----
A
K
E
D
P
R
VLG
L
H
D
L
R
T
R
Q
A
G
-------
K
-------------
T
--
V
F
I
-----
Q
F
H
L
E
L
--
D
GNLSLN
E
A
H
--------------
S
I
T
D
T
T
G
L
R
V
K
A
A
------
F
E
---------------
D
---
A
E
V
I
I
-------
H
Q
D
P
V
Q
V
---------------------------------------------
40
HHSearch
44.93
12%
-204
- C2 -
2QIF
5
COPZ_BACSU
A:
[15-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
C
-
V
K
A
V
E
T
S
-----
V
G
E
L
D
G
---
V
S
A
V
H
V
N
L
E
A
-------
G
-------------
K
--
V
D
V
-----
S
F
D
A
------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
44.46
24%
-231
- C2 -
1YG0
-
COPP_HELPY
A:
[14-47]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
C
-
V
D
K
I
E
K
F
-----
V
G
E
I
E
G
---
V
S
F
I
D
V
S
V
E
K
-------
K
-------------
S
--
V
V
V
-----
E
F
D
A
------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
43.32
21%
-170
- C2 -
2LQB
-
A:
[21-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-
V
S
S
I
E
G
K
-----
V
R
K
L
Q
G
---
V
V
R
V
K
V
S
L
S
N
-------
Q
-------------
E
--
A
V
I
-----
T
Y
Q
P
------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
42.95
14%
83
- C- -
2OKU
-
?
A:
[443-564]
--------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
-----
V
A
---------
A
I
R
H
I
T
---
T
G
T
Y
I
A
R
-----
I
R
E
E
Y
Q
-----
Q
T
E
V
K
--------------
P
E
--
L
Q
P
M
K
E
--
A
----------------------
L
A
R
M
T
D
R
A
E
A
L
-----
I
A
F
V
T
E
---
Q
K
D
Q
E
L
L
D
F
Q
-------
A
-------------
R
--
R
L
V
E
M
T
A
H
A
V
F
G
H
L
--
L
M
-----
L
A
A
--------------
N
D
D
D
S
F
R
Q
S
A
E
V
Y
------
L
R
---------------
Y
---
G
Q
A
E
Q
-------
E
K
I
D
S
Y
V
R
A
F
R
P
E
E
L
T
------------------------------------
62
HHSearch
42.58
9%
-146
- C2 -
1FVQ
-
ATU2_YEAST
A:
[16-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-
T
N
T
I
N
T
Q
-----
L
R
A
L
K
G
---
V
T
K
C
D
I
S
L
V
T
-------
N
-------------
E
--
C
Q
V
-----
T
Y
D
N
------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.20
33%
40
- C2 -
5AWM
-
JNK_DROME
A:
[264-316]
------------------------------------------------------------------------------------------------------------
P
S
-------
P
S
F
M
Q
R
L
Q
P
T
V
R
N
Y
--------
V
E
N
R
P
R
Y
T
G
-----
Y
S
---------
F
D
R
L
F
P
---
D
G
L
F
P
N
D
-------
Q
N
S
R
-----
R
K
A
S
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
HHSearch
41.45
21%
-178
- C2 -
2LDI
-
ATZN_SYNY3
A:
[22-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
-
A
S
S
I
E
R
A
-----
L
E
R
L
K
G
---
V
A
E
A
S
V
T
V
A
T
-------
G
-------------
R
--
L
T
V
-----
T
Y
D
P
K
-----------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
40.13
9%
-160
- C2 -
1AW0
-
A:
[16-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
-
V
Q
S
I
E
G
V
-----
I
S
K
K
P
G
---
V
K
S
I
R
V
S
L
A
N
-------
S
-------------
N
--
G
T
V
-----
E
Y
D
P
------------------------------------------------------------------------------------------------------------------------------------