@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28060: (2016-07-14 )
MKKRKNKKNSKAAEKALKVTINGKEETVYEQETPETEANKSMTFSNWEEKRQAEQEVAASQEHPDEDEFNWDSEEDKVFKEDPKVVPPFQKKKTKLYAKGKTGAAKPVKRVAATIAFAAVIGTGLGLFALNISGNKEASAPASLEDSLGSQTAKAGDTSADKQTSGAEKQAAQTEGTYKTYAVQAGKFSNEKGAETLTEQLTEKGYSAVSLSKDDGYTYVIAGLASEKEVSQQLGQVLIDSDFEAWGGKELSLSIESDMTDSFKETAELAAKAILDEDITKASVEKIEKSLGETKASETGEKKAILQALKELEDPSAEAGWKAQQELLAVVK
Atome Classification :
(20 SA)
-----------------.........10-........20........30........40......-----...50........60........70....------....80.---------------..-----..---...90......--..100.......--..110.......120....--------...130..-.-----....140.......------150....-...160...--------.....170.-..------------.-----------...180.......190..-.--...-------.200.......210-..------...---...220---------.....---..230.......240------...-.....250.......-----260........270.-....---..280--....------------.-----..290-----......---..300.....--...310-........320...----...------.330----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------MKKRKNKKN
S
K
-
A
A
E
K
A
L
K
V
T
INGKEE
T
V
YEQETPETEANK-SMTFS
N
-----
W
E
E
K
R
Q
A
E
Q
E
V
AASQEHPDEDEFNWDSEE------
D
K
V
FKED---------------PK-----VV---PPFQKK
K
T
K
L
Y
--AKG--KTGA
A
K
P
--
V
K
R
V
A
A
T
I
A
F
A
A
V
I
GTG
L
G
--------
L
F
A
L
NISG-N-----KEASAPA
S
L
E
D
S
LG------SQTAKAG-DTSAD-KQT--------SGAEK
Q
A
AQ-TE------------G-----------T
Y
K
T
Y
A
V
QAGKFSNEK
G
A
-
E
--
T
L
T
-------
E
Q
L
T
EKGY
S
A
V
S
L--SK------DD
G
---
Y
T
Y
V
I
A---------GLAS
E
---
K
E
V
S
Q
Q
L
G
Q
V
L
IDS-------D
F
E
-AWGG
K
E
L
S
L
S
IESDM-----
T
-
D
S
F
K
E
T
A
E
L
A
A
K
A
-
I
L
D
E
---
D
I
T
K
A
--
S
V
E
K
------------
I
-----
E
K
S
L------GETKAS---ETG
E
-
K
K
A
I
L
--
Q
A
L
K
E--LEDPSAEAG
W
K
A
Q
Q
----
E
L
L
------
A
VVK----------------------------------------------
39
Fugue
64.89
17%
85
- C4 -
4EWV
3
GH312_ARATH
A:
[14-581]
N
E
T
F
E
K
Q
L
K
D
L
TSNVK
S
I
Q
D
N
L
L
E
E
I
I
T
-
P
D
K
E
L
F
K
K
N
V
S
Y
E
D
I
K
P
Y
L
D
R
V
V
N
G
E
S
Q
K
-
M
M
P
W
N
N
KYLDN
L
T
F
I
Y
D
L
R
M
Q
V
I
T
K
H
V
K
G
V
E
M
M
F
L
F
T
K
Q
E
PARVAT
S
S
Y
F
K
S
D
Y
F
K
N
RPSNWYYSYTS
P
D
-----
E
V
---
I
L
C
P
N
N
T
E
S
L
Y
--
C
H
L
--
L
C
G
L
V
Q
R
GS
I
F
A
S
V
M
V
R
A
I
E
V
L
K
N
S
W
E
E
--------
L
C
S
N
I
R
S
G
-
H
LSNWV
T
D
L
G
C
Q
N
S
V
S
L
V
L
G
------
G
P
R
P
E
L
A
-
D
T
I
E
E
-
I
C
N
--------
Q
N
S
W
K
G
I
V
K
-
R
L
WPNTK
Y
I
E
T
VVT
G
-----------
S
M
G
Q
Y
V
P
M
L
N
Y
Y
C
N
D
L
P
L
-
V
S
T
T
Y
G
-------
S
S
E
T
T
F
G
I
N
L
D
P
L
--
C
K
------
P
E
D
---
V
S
Y
T
F
M
PNMSYFEFI
G
C
T
Y
A
---
G
L
Y
R
M
R
V
G
D
I
V
L
V
T
GFYNN
A
P
Q
F
K
-
F
V
R
R
E
N
V
V
L
S
I
D
S
D
K
-----
T
N
E
E
D
L
F
K
A
V
S
Q
A
K
L
-
V
L
E
S
S
GL
D
L
K
D
F
--
T
S
Y
A
D
TSTFP
G
H
Y
V
V
Y
L
-----
E
V
D
T
------
K
Q
F
E
L
D
---
E
E
A
L
-
S
T
C
C
L
--
V
M
E
E
S
--
L
D
N
V
Y
K
R
C
R
F
K
D
G
S
IG
P
L
E
I
R
------
V
V
R
Q
G
T
F
D
S
L
M
D
F
F
I
S
Q
GASTGQ
Y
K
T
P
RCIKSGKA
L
Q
V
L
E
T
C
VV
A
K
F
F
S
I
22
HHSearch
57.39
28%
-84
- C5 -
1X60
-
A:
[6-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
G
L
Y
K
V
Q
I
G
A
F
K
V
K
A
N
A
-
D
--
S
L
A
-------
S
N
A
E
A
K
G
F
D
S
I
V
L
--
L
K
------
D
G
L
---
Y
-
K
V
Q
I
---------
G
A
F
S
S
---
K
D
N
A
D
T
L
A
A
R
A
K
N
A
-------
G
F
D
-
A
I
V
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
54.26
19%
75
- C4 -
4PEV
1
?
A:
[52-421]
--------P
I
S
V
L
V
L
F
D
V
G
G
R
G
D
L
S
F
N
D
M
A
A
L
G
A
D
R
A
A
E
E
L
G
V
D
V
V
F
Q
--
T
P
Q
S
L
A
-
V
M
E
S
V
L
D
A
-----
A
S
R
S
G
E
Y
D
L
I
V
L
V
G
--------
F
L
W
Q
E
P
L
------
E
K
V
A
P
R
Y
---------------
P
E
Q
K
Y
A
L
I
D
---
A
A
T
R
E
R
Y
D
N
V
A
--
S
Y
L
F
R
E
Q
E
V
A
S
L
--
V
G
I
I
A
A
D
I
A
N
N
I
S
K
A
T
G
E
E
--------
A
K
A
G
A
V
A
G
M
D
-----
I
P
P
L
W
R
F
H
I
G
Y
L
Y
G
------
V
Q
Y
Y
N
Q
A
M
G
T
D
V
E
M
V
W
T
Y
TGRFDD
P
T
L
G
K
T
T
A
E
Q
M
L
Q
------------
Q
-----------
G
V
R
V
F
Y
G
V
A
G
L
T
H
V
---
G
M
F
--
N
A
V
-------
K
E
A
A
A
R
G
V
I
A
F
S
I
--
G
Q
------
D
A
S
QEW
Y
D
P
Q
T
I
---------
I
I
S
G
L
---
K
R
V
D
V
A
V
Y
T
A
I
K
D
V
-------
V
E
G
-
R
F
R
G
G
I
V
S
L
G
L
K
E
G
G
LGLSD
E
-
E
I
I
R
Y
F
A
E
I
A
A
E
T
G
Q
L
P
E
---
G
L
T
P
E
--
K
V
V
E
------------
I
V
M
S
Q
R
E
K
W
I
------
S
N
D
G
W
R
---
L
V
E
E
L
K
Q
K
I
I
--
S
G
E
I
K
--
F
V
T
P
Q
D
H
D
T
Y
D
S
I
I
----
E
E
L
K
A
GNLE
A
A
L
E
----------------------------------------------
23
HHSearch
51.63
21%
-93
- C5 -
1UTA
-
FTSN_ECOLI
A:
[244-315]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
R
R
W
M
V
Q
C
G
S
F
R
G
A
E
Q
A
-
E
--
T
V
R
-------
A
Q
L
A
F
E
G
F
D
S
K
I
T
--
T
N
------
N
G
W
---
N
-
R
V
V
I
---------
G
P
V
K
G
---
K
E
N
A
D
S
T
L
N
R
L
K
M
A
-------
G
H
T
N
C
I
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
51.61
29%
-95
- C5 -
1X60
-
A:
[10-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
V
Q
I
G
A
F
K
V
K
A
N
A
-
D
--
S
L
A
-------
S
N
A
E
A
K
G
F
D
S
I
V
L
--
L
K
------
D
G
L
---
Y
K
V
Q
I
G
---------
A
F
S
S
----
K
D
N
A
D
T
L
A
A
R
A
K
N
A
-------
G
F
D
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
45.71
13%
-112
- C5 -
2LEP
-
GLPG_ECOLI
A:
[2-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
I
T
S
F
A
N
P
R
V
A
-
Q
--
A
F
V
-------
D
Y
M
A
T
Q
G
V
I
L
T
I
Q
--
Q
-------
H
N
Q
---
S
-
D
V
W
L
---------
A
D
E
S
Q
---
A
E
R
V
R
A
E
L
A
R
F
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
44.83
31%
-228
- C5 -
3GR1
-
PRGH_SALTY
A:
[322-360]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
44.53
27%
102
- C5 -
3LEZ
8
?
A:
[20-166]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
-
D
T
G
A
D
-
K
E
I
--------
S
Y
R
E
N
E
R
F
A
-
Y
T
------------
S
-----------
T
F
K
P
L
A
V
--
G
A
V
L
Q
T
K
S
D
-
E
--
E
L
E
-------
E
T
I
T
Y
S
E
E
D
L
V
T
Y
--
S
P
I
T
E
Q
H
V
D
E
G
---
M
T
L
V
E
I
---------
A
D
A
A
I
---
R
Y
S
D
N
T
A
G
N
L
L
L
-----------
E
-
A
M
G
G
P
D
---
E
L
E
T
I
L
-----
R
-
D
I
G
D
E
T
I
E
M
---------------------
D
R
------------
Y
-----
E
T
E
L
------
N
E
A
K
P
G
DIR
D
T
S
T
-
A
K
A
M
A
--
T
T
L
Q
Q
Y
V
L
E
D
--------------------------------------------------------------------------
43
Fugue
43.97
18%
-54
- C5 -
1UTA
-
FTSN_ECOLI
A:
[243-319]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-----------
D
E
R
R
W
M
V
Q
C
G
S
F
R
G
A
E
Q
A
-
E
--
T
V
R
-------
A
Q
L
A
F
E
G
F
D
S
K
I
T
--
T
N
------
N
G
W
---
N
R
V
V
I
G
---------
P
V
K
G
K
E
N
A
D
S
T
L
N
R
L
K
M
A
G
H
T
N
-------
C
I
R
-
L
A
A
G
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
43.57
31%
-195
- C5 -
4G1I
2
PRGH_SALTY
B:
[157-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
43.37
31%
-199
- C5 -
4G1I
1
PRGH_SALTY
A:
[157-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
43.24
15%
135
- C2 -
3WUQ
-
DYHC1_MOUSE
A:
[3209-3471]
---------------T
V
D
Q
V
E
E
L
R
R
D
L
R
-
I
K
S
Q
E
L
E
V
K
N
A
A
A
N
D
K
L
K
K
M
V
K
D
Q
Q
E
A
E
K
-
K
K
V
M
S
Q
-----
E
I
Q
E
Q
L
H
K
Q
Q
E
V
I
A
D
K
Q
M
S
V
K
E
-
D
L
D
K
V
E
------
P
A
V
I
E
A
Q
---------------
N
A
-----
V
K
---
S
I
K
K
Q
H
L
V
E
V
R
--
S
M
--------------------------------------------------------
A
N
P
P
A
A
V
K
L
A
L
E
------
S
I
C
L
L
L
G
-
E
S
T
T
D
----------------
W
K
Q
I
R
-
S
I
------------
I
-----------
M
R
E
N
F
I
P
T
I
V
N
F
S
A
E
E
I
S
-
D
--
A
I
R
-------
E
K
M
K
K
N
Y
M
S
--------------
N
P
S
---
Y
N
Y
E
I
V
---------
N
R
A
S
--------------
L
A
C
G
-------
P
M
V
-
K
W
A
I
A
Q
L
N
Y
A
D
M
L
K
R
-----
V
-
E
P
L
R
N
E
L
Q
K
L
E
D
D
-
A
K
D
N
---
Q
Q
K
A
N
--
E
V
E
Q
------------
M
-----
I
R
D
L
------
E
A
S
I
A
R
---
Y
K
E
E
-
Y
A
V
L
I
--
S
E
A
Q
A
--
I
K
A
D
L
A
A
V
E
A
K
V
N
----------------------------------------------------------------
3
PsiBlast_PDB
41.76
31%
-206
- C5 -
2Y9J
-
PRGH_SALTY
A:
[322-360]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
41.74
29%
-67
- C5 -
1UTA
-
FTSN_ECOLI
A:
[246-295]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
W
M
V
Q
C
G
S
F
R
G
A
E
Q
A
-
E
--
T
V
R
-------
A
Q
L
A
F
E
G
F
D
S
-
K
I
--
T
T
------
N
N
G
---
W
N
R
V
V
I
---------
G
P
V
K
G
---
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
41.73
31%
-206
- C5 -
3GR0
-
PRGH_SALTY
A:
[322-360]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
40.83
12%
83
- C4 -
3VS8
2
?
A:
[7-410]
--------HPN
S
A
V
L
A
D
F
I
P
V
Q
L
A
K
P
V
P
--
Q
R
I
T
L
E
L
T
A
Y
G
F
A
R
A
H
C
L
S
N
G
I
T
D
E
E
G
F
-
V
Q
V
Y
K
T
-----
V
K
E
K
F
D
K
Y
---
A
V
S
P
A
Q
I
K
Q
R
Q
L
V
Y
F
P
K
L
------
T
D
I
R
F
G
D
---------------
G
N
-----
F
D
I
A
D
P
E
P
D
Q
A
H
L
R
L
F
DI
K
K
D
--
P
R
G
A
D
L
K
--
T
R
H
E
S
Y
A
K
V
V
G
K
G
L
E
Q
M
F
E
GTLEAPD
D
L
I
H
V
T
C
S
G
-
Y
-----
L
A
P
S
P
A
E
R
M
V
A
D
R
G
WFE
T
T
V
T
H
S
Y
N
M
G
-
C
Y
G
A
F
-
P
A
I
--------
K
M
A
H
G
M
L
A
S
-
A
Q
------------
W
GATPPKT
R
V
D
I
A
H
T
E
L
M
S
A
H
N
N
I
A
E
S
R
V
D
-
N
--
I
I
S
-------
A
T
L
F
S
D
G
L
I
K
Y
S
V
--
Y
P
------
E
D
E
---
L
R
R
Q
G
L
---------
R
G
L
R
I
---
L
A
M
S
E
H
L
----
L
P
D
-------
S
A
D
-
T
M
T
G
V
P
G
S
H
Q
F
V
M
T
L
-----
S
-
P
L
V
P
A
I
I
K
R
H
V
R
A
-
F
A
V
D
---
L
L
R
R
A
GM
D
F
E
R
------------
D
-----
K
D
A
L
SFAIHP
G
G
P
K
I
V
---
D
H
V
Q
-
E
E
L
G
L
AE
D
Q
V
A
I
--
S
K
S
V
F
L
E
N
G
N
M
S
S
S
----
T
I
P
------
H
I
L
K
A
Y
L
E
E
ATVG
T
R
I
A
C
L
G
F
G
P
GL
T
A
A
G
L
V
L
E
K
I---------------
4
PsiBlast_PDB
40.46
31%
-194
- C5 -
3J1X
-
PRGH_SALTY
A:
[322-360]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
V
T
F
V
I
Q
---------
G
A
L
D
D
---
V
E
I
L
R
--
A
R
Q
F
V
D
S
-------
Y
Y
R
-
T
W
G
G
R
Y
V
Q
F
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
39.66
24%
38
* C6 *
5D7J
2
?
A:
[10-114]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
--------
T
A
T
E
G
A
I
V
Q
-
I
N
------------
C
-----------
T
Y
Q
T
S
G
F
N
G
L
F
W
Y
Q
Q
H
A
G
-
E
--
A
P
T
F
L
SYNV
L
D
G
L
E
E
K
G
R
F
S
S
F
L
--
S
R
------
S
K
G
---
Y
S
Y
L
L
L
---------
K
E
L
Q
M
---
K
D
S
A
S
Y
L
C
A
V
M
-
D
S
-------
N
F
Q
-
L
I
W
G
A
G
T
K
L
I
I
K
P
D
I
-----
Q
-
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
38.70
31%
-85
- C5 -
1X60
-
A:
[41-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----------
K
D
G
L
Y
K
V
Q
I
G
A
F
S
S
K
D
N
A
-
D
--
T
L
A
-------
A
R
A
K
N
A
G
F
D
A
I
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
38.08
16%
25
- C5 -
2LFV
-
DAMX_ECOLI
A:
[342-418]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------------
A
-----------
P
S
S
H
Y
T
L
Q
L
S
S
S
S
N
Y
D
N
L
-
N
--
G
W
A
-------
K
K
E
N
L
K
N
Y
V
V
Y
E
T
T
R
N
G
------
Q
P
W
---
Y
-
V
L
V
S
---------
G
V
Y
A
S
---
K
E
E
A
K
K
A
V
S
T
L
P
A
D
V
Q
-----
A
K
N
-
P
W
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------