@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28170: (2016-07-14 )
MHILVVGVDYKSAPIEIREKVSFQPNELAEAMVQLKEEKSILENIIVSTCNRTEIYAVVDQLHTGRYYIKKFLADWFQLSKEELSPFLTFYESDAAVEHLFRVACGLDSMVIGETQILGQVRDSFKTAQQEKTIGTIFNELFKQAVTVGKRTHAETDIGSNAVSVSYAAVELAKKIFGNLSSKHILILGAGKMGELAAENLHGQGIGKVTVINRTYLKAKELADRFSGEARSLNQLESALAEADILISSTGASEFVVSKEMMENANKLRKGRPLFMVDIAVPRDLDPALNDLEGVFLYDIDDLEGIVEANMKERRETAEKVELLIEETIVEFKQWMNTLGVVPVISALREKALAIQSETMDSIERKLPHLSTREKKLLNKHTKSIINQMLRDPILKVKELAADADSEEKLALFMQIFDIEEAAGRQMMKTVESSQKVHSFKKAESKAGFSPLVSE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70....------....80........90........100.......110.......120.......130.......140.......150.......160.......170......--.180-----.--........190.......200.......210.......220......---.230-...----......240.......250--.........260......--.270..-.......280---------........290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.....--..410.......420.......430.......440.......450...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
H
I
L
V
V
GVDYKSA
P
I
E
I
R
E
KVSF
Q
P
N
E
L
A
E
A
M
V
Q
L
K
E
E
K
S
I
L
E
N
I
I
V
STCNR
T
E
I
Y
A
V
V
D
Q
LHT
G
R
Y
Y
I
K
K
F
L
A
D
------
W
F
Q
L
S
K
E
E
L
S
P
F
L
T
F
YES
D
A
A
V
E
H
L
F
R
V
A
CGLDSMVIG
E
T
Q
I
L
G
Q
V
R
D
S
F
K
T
A
Q
Q
E
K
T
I
G
T
I
F
N
E
L
F
K
Q
A
V
T
VGKRTHAETDIGSN
A
V
S
V
S
Y
A
A
V
E
L
A
K
K
I
F
G--NL-------S--S
K
H
I
L
I
L
GAGK
M
G
E
L
A
A
E
NLHGQGI
G
K
V
T
V
I
N
R
T
Y
L
K
A
K
E
L
A
D
RFSG---EA---
R
S
L
----
N
Q
L
E
S
A
L
AEA
D
I
L
I
SST----GA
S
E
F
V
V
S
K
E
M
M
E
N
A
N
K
L--RK--GR-
P
L
F
M
V
DIAV----------PRDL
D
P
A
L
NDLE
G
V
F
L
Y
DI
D
D
L
E
G
I
V
E
A
N
M
K
E
R
R
E
T
A
E
K
V
E
L
L
I
E
E
T
I
V
E
F
K
Q
W
M
N
TL
G
V
V
P
V
I
S
A
L
R
E
K
A
L
A
I
Q
S
E
T
M
D
S
I
E
R
KLPHL
S
T
R
E
K
K
L
L
N
K
H
T
K
S
I
I
N
Q
M
L
R
D
P
I
L
K
V
K
E
L
AADAD
S
E
--
E
K
L
A
L
F
M
Q
I
F
D
I
E
E
A
A
G
R
Q
M
M
K
T
V
E
S
S
Q
K
V
H
S
F
K
K
A
ESKAGFSPLVSE
83
HHSearch
74.85
31%
-38
- C- -
4N7R
-
HEM11_ARATH
A:
[95-524]
S
S
I
V
V
I
G
L
S
I
H
T
A
P
V
E
M
R
E
K
L
A
I
P
E
A
E
W
P
R
A
I
A
E
L
C
G
L
N
H
I
E
E
A
A
V
L
S
T
C
N
R
M
E
I
Y
V
L
A
L
S
Q
H
R
G
V
K
E
V
T
E
W
M
S
K
------
T
S
G
I
P
V
S
E
I
C
Q
H
R
F
L
L
Y
N
K
D
A
T
Q
H
I
F
E
V
S
A
G
L
D
S
L
V
L
G
E
G
Q
I
L
A
Q
V
K
Q
V
V
K
V
G
Q
G
V
N
G
F
G
R
N
I
S
G
L
F
K
H
A
I
T
V
G
K
R
V
R
T
E
T
N
I
A
S
G
A
V
S
V
S
S
A
A
V
E
L
A
L
M
K
L
P
QS
S
N
-------
V
--
S
A
R
M
C
V
I
G
A
G
K
M
G
K
L
V
I
K
H
L
M
A
K
G
C
T
K
V
V
V
V
N
R
S
E
E
R
V
S
A
I
R
E
E
M
P
G
I
E
I
I
Y
---
R
P
L
----
D
E
M
L
A
C
A
S
E
A
D
V
V
F
T
S
T
----
A
S
E
T
P
L
F
L
K
E
H
V
E
N
L
P
Q
A
SP
E
V
--
G
G
-
L
R
H
F
V
D
I
S
V
----------
P
R
N
V
G
S
C
V
G
E
V
E
T
A
R
V
Y
N
V
D
D
L
K
E
V
V
A
A
N
K
E
D
R
M
R
K
A
M
E
A
Q
T
I
I
T
E
E
S
T
Q
F
E
A
W
R
D
S
L
E
T
V
P
T
I
K
K
L
R
A
Y
A
E
R
I
R
V
A
E
L
E
K
C
M
------------
A
V
D
D
L
S
R
G
I
V
N
R
F
L
H
G
P
M
Q
H
-----------T
L
E
N
M
H
A
L
N
R
M
Y
G
-------------------------------------
1
PsiBlast_PDB
74.01
31%
-46
- C- -
5CHE
-
HEM11_ARATH
A:
[97-506]
--
I
V
V
I
G
L
S
I
H
T
A
P
V
E
M
R
E
K
L
A
I
P
E
A
E
W
P
R
A
I
A
E
L
C
G
L
N
H
I
E
E
A
A
V
L
S
T
C
N
R
M
E
I
Y
V
L
A
L
S
Q
H
R
G
V
K
E
V
T
E
W
M
S
K
------
T
S
G
I
P
V
S
E
I
C
Q
H
R
F
L
L
Y
N
K
D
A
T
Q
H
I
F
E
V
S
A
G
L
D
S
L
V
L
G
E
G
Q
I
L
A
Q
V
K
Q
V
V
K
V
G
Q
G
V
N
G
F
G
R
N
I
S
G
L
F
K
H
A
I
T
V
G
K
R
V
R
T
E
T
N
I
A
S
G
A
V
S
V
S
S
A
A
V
E
L
A
L
M
K
L
P
--
Q
S
-------
S
NV
S
A
R
M
C
V
I
G
A
G
K
M
G
K
L
V
I
K
H
L
M
A
K
G
C
T
K
V
V
V
V
N
R
S
E
E
R
V
S
A
I
R
E
E
M
P
G
---
I
E
I
I
Y
R
P
L
----
D
E
M
L
A
C
A
S
E
A
D
V
V
F
T
S
T
----
A
S
E
T
P
L
F
L
K
E
H
V
E
N
L
P
Q
A
--
S
P
EV
G
G
-
L
R
H
F
V
D
I
S
V
----------
P
R
N
V
G
S
C
V
G
E
V
E
T
A
R
V
Y
N
V
D
D
L
K
E
V
V
----
E
D
R
M
R
K
A
M
E
A
Q
T
I
I
T
E
E
S
T
Q
F
E
A
W
R
D
S
L
E
T
V
P
T
I
K
K
L
R
A
Y
A
E
R
I
R
V
A
E
L
E
K
C
M
S
K
M
--
I
N
K
K
T
T
R
A
V
D
D
L
S
R
G
I
V
N
R
F
L
H
G
P
M
Q
H
L
R
C
D
G
S
D
S
-----------------------------------------------------
84
HHSearch
66.48
31%
-71
- C4 -
1GPJ
3
HEM1_METKA
A:
[2-389]
E
D
L
V
S
V
G
I
T
H
K
E
A
E
V
E
E
L
E
K
A
R
F
E
S
D
E
A
---
V
R
D
I
V
E
S
F
G
L
S
G
S
V
L
L
Q
T
S
N
R
V
E
V
Y
A
S
G
A
R
D
R
A
E
------
E
L
G
D
-------------
L
I
H
D
D
A
W
V
K
R
G
S
E
A
V
R
H
L
F
R
V
A
S
G
L
E
S
M
M
V
G
E
Q
E
I
L
R
Q
V
K
K
A
Y
D
R
A
A
R
L
G
T
L
D
E
A
L
K
I
V
F
R
R
A
I
N
L
G
K
R
A
R
E
E
T
R
I
S
E
G
A
V
S
I
G
S
A
A
V
E
L
A
E
R
E
L
G
--
S
L
-------
H
--
D
K
T
V
L
V
V
G
A
G
E
M
G
K
T
V
A
K
S
L
V
D
R
G
V
R
A
V
L
V
A
N
R
T
Y
E
R
A
V
E
L
A
R
D
L
G
G
---
E
A
---
V
R
F
----
D
E
L
V
D
H
L
A
R
S
D
V
V
V
S
A
T
----
A
A
P
H
P
V
I
H
V
D
D
V
R
E
A
L
R
K
R-
D
R
--
R
S
-
P
I
L
I
I
D
I
A
N
----------
P
R
D
V
E
E
G
V
E
N
I
E
D
V
E
V
R
T
I
D
D
L
R
V
I
A
R
E
N
L
E
R
R
R
K
E
I
P
K
V
E
K
L
I
E
E
E
L
S
T
V
E
E
E
L
E
K
L
K
E
R
R
L
V
A
D
V
A
K
S
L
H
E
I
K
D
R
E
L
E
R
A
L
R
R
L
K
T
-------
V
L
Q
D
F
A
E
A
Y
T
K
R
L
I
N
V
L
T
S
A
I
M
E
L
P
D
E
Y
R
----------------------------------------------------
2
PsiBlast_PDB
53.72
35%
30
- C4 -
1GPJ
3
HEM1_METKA
A:
[4-316]
--
L
V
S
V
G
I
T
H
K
E
A
E
V
E
E
L
E
K
A
R
F
E
S
D
E
---
A
V
R
D
I
V
E
S
F
G
L
S
G
S
V
L
L
Q
T
S
N
R
V
E
V
Y
A
------
S
G
A
R
D
R
A
E
E
L
G
D
L
I
HDD
A
W
V
K
R
G
S
E
-------------
A
V
R
H
L
F
R
V
A
S
G
L
E
S
M
M
V
G
E
Q
E
I
L
R
Q
V
K
K
A
Y
D
R
A
A
R
L
G
T
L
D
E
A
L
K
I
V
F
R
R
A
I
N
L
G
K
R
A
R
E
E
T
R
I
S
E
G
A
V
S
I
G
S
A
A
V
E
L
A
E
R
E
L
G
--
S
L
-------
H
--
D
K
T
V
L
V
V
G
A
G
E
M
G
K
T
V
A
K
S
L
V
D
R
G
V
R
A
V
L
V
A
N
R
T
Y
E
R
A
V
E
L
A
R
D
L
G
G
---
E
A
---
V
R
F
----
D
E
L
V
D
H
L
A
R
S
D
V
V
V
S
A
T
----
A
A
P
H
P
V
I
H
V
D
D
V
R
E
A
L
R
K
--
R
D
--
R
R
S
P
I
L
I
I
D
I
A
N
----------
P
R
D
V
E
E
G
V
E
N
I
E
D
V
E
V
R
T
I
D
D
L
R
V
I
A
R
E
N
L
E
R
R
R
K
E
I
P
K
V
E
K
L
I
------------------------------------------------------------------------------------------------------------------------------------
62
PsiBlast_CBE
45.80
31%
-168
- C6 -
2HK9
1
AROE_AQUAE
D:
[121-194]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
I
P
--
E
V
-------
K
--
E
K
S
I
L
V
L
G
A
G
G
A
S
R
A
V
I
Y
A
L
V
K
E
G
-
A
K
V
F
L
W
N
R
T
K
E
K
A
I
K
L
A
Q
K
F
P
L
---
E
V
-----
V
----
N
S
P
E
E
V
I
D
K
V
Q
V
I
V
N
T
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
PsiBlast_CBE
45.69
31%
-182
- C6 -
2HK9
1
AROE_AQUAE
C:
[121-194]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
I
P
--
E
V
-------
K
--
E
K
S
I
L
V
L
G
A
G
G
A
S
R
A
V
I
Y
A
L
V
K
E
G
-
A
K
V
F
L
W
N
R
T
K
E
K
A
I
K
L
A
Q
K
F
P
L
---
E
V
-----
V
----
N
S
P
E
E
V
I
D
K
V
Q
V
I
V
N
T
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
PsiBlast_CBE
44.65
31%
-177
- C6 -
2HK9
1
AROE_AQUAE
A:
[121-194]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
I
P
--
E
V
-------
K
--
E
K
S
I
L
V
L
G
A
G
G
A
S
R
A
V
I
Y
A
L
V
K
E
G
-
A
K
V
F
L
W
N
R
T
K
E
K
A
I
K
L
A
Q
K
F
P
L
---
E
V
-----
V
----
N
S
P
E
E
V
I
D
K
V
Q
V
I
V
N
T
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
PsiBlast_CBE
44.42
31%
-169
- C6 -
2HK9
1
AROE_AQUAE
B:
[121-194]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
I
P
--
E
V
-------
K
--
E
K
S
I
L
V
L
G
A
G
G
A
S
R
A
V
I
Y
A
L
V
K
E
G
-
A
K
V
F
L
W
N
R
T
K
E
K
A
I
K
L
A
Q
K
F
P
L
---
E
V
-----
V
----
N
S
P
E
E
V
I
D
K
V
Q
V
I
V
N
T
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
PsiBlast_CBE
41.41
41%
-248
- C6 -
4YED
1
TCDA_ECOLI
D:
[31-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
PsiBlast_CBE
41.28
41%
-253
- C6 -
4D79
1
TCDA_ECOLI
A:
[28-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
PsiBlast_CBE
41.27
41%
-248
- C6 -
4D7A
1
TCDA_ECOLI
A:
[28-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
PsiBlast_CBE
40.37
41%
-240
- C6 -
4RDH
1
TCDA_ECOLI
A:
[48-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
39.90
28%
-146
- C6 -
2ZIZ
1
SAHH_MYCTU
A:
[273-345]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
G
--
G
K
K
V
L
I
C
G
Y
G
D
V
G
K
G
C
A
E
A
M
K
G
Q
G
-
A
R
V
S
V
T
E
I
D
P
I
N
A
L
Q
A
M
----
M
---
E
G
---
F
D
V
----
V
T
V
E
E
A
I
G
D
A
D
I
V
V
T
A
T
----
G
N
K
D
I
I
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
39.85
28%
-139
- C6 -
2ZJ0
1
SAHH_MYCTU
A:
[273-345]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
G
--
G
K
K
V
L
I
C
G
Y
G
D
V
G
K
G
C
A
E
A
M
K
G
Q
G
-
A
R
V
S
V
T
E
I
D
P
I
N
A
L
Q
A
M
----
M
---
E
G
---
F
D
V
----
V
T
V
E
E
A
I
G
D
A
D
I
V
V
T
A
T
----
G
N
K
D
I
I
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
PsiBlast_CBE
39.77
41%
-249
- C6 -
4D79
1
TCDA_ECOLI
D:
[28-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
PsiBlast_CBE
39.68
41%
-245
- C6 -
4YED
1
TCDA_ECOLI
A:
[31-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
PsiBlast_CBE
39.57
41%
-244
- C6 -
4RDI
1
TCDA_ECOLI
A:
[48-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
75
Fugue
39.56
26%
-17
* C5 *
1PJC
1
?
A:
[136-303]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
R
L
S
V
Q
F
G
A
R
F
L
E
R
Q
Q
G
G
R
G
--
V
L
LGGVPGV
K
--
P
G
K
V
V
I
L
G
G
G
V
V
G
T
E
A
A
K
M
A
V
G
L
G
A
-
Q
V
Q
I
F
D
I
N
V
E
R
L
S
Y
L
E
T
L
F
G
S
---
R
V
---
E
L
L
Y
SN
S
A
E
I
E
T
A
V
A
E
A
D
L
L
I
G
A
V
L
V
P
G
R
R
A
P
I
L
V
P
A
S
L
V
---
E
Q
M
--
R
T
--
G
S
---
V
I
V
D
V
A
V
DQGGCVETLH
P
T
S
H
T
Q
P
T
Y
E
V
F
G
V
V
H
Y
G
V
P
N
M
P
G
A
-------------------------------------------------------------------------------------------------------------------------------------------------------
47
PsiBlast_CBE
39.34
41%
-253
* C6 *
4D7A
1
TCDA_ECOLI
B:
[28-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
PsiBlast_CBE
39.30
41%
-239
- C6 -
4RDI
1
TCDA_ECOLI
D:
[48-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------
A
--
D
A
H
I
C
V
V
G
I
G
G
V
G
S
W
A
A
E
A
L
A
R
T
G
I
G
A
I
T
L
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------