@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28920: (2016-07-16 )
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGENGFDIAKRLKKMKHPPAIVFATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVNRDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTEDGHVNVKTFDHSYTVSDTLVVIEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLHI
Atome Classification :
(20 SA)
.........10........20...----.....-30........40...-.....50......--..60........70...----.....80...--...--..--90-.........100.......110.......120.......130.......140.......150.......160--.......170.......180....-...190-........200.......210.......220.......230.......240-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
L
R
V
L
I
VD
D
E
M
L
A
R
D
E
L
A
Y
L
L
K
RT----NDEME-IN
E
A
E
N
I
E
S
A
F
D
Q
M
M
-DQKP
D
L
L
F
L
D
V
DL--SGEN
G
F
D
I
A
K
R
L
K
KMKH----P
P
A
I
V
F
A
T
A
Y
--
D
Q
Y
--
A
L
--
K
--
A
FEV
D
A
L
D
Y
L
TKPF
D
E
E
R
I
Q
Q
T
L
K
K
Y
K
K
VN
R
D
I
V
ETEQNSHAGQ
H
K
L
A
L
SVG
E
S
I
V
I
V
DTK
D
I
I
Y
AGTEDG
H
--
V
N
V
K
T
FDHSYTVS
D
T
L
V
V
I
EKKLP-
D
S
D
F
I
--
R
V
H
R
S
FVV
N
T
E
Y
I
K
E
I
Q
P
W
F
N
S
T
Y
N
L
IMKDGSKIP
V
S
R
T
Y
A
K
E
L
K
K
L
LHI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
70.56
31%
-179
- C2 -
3Q15
1
SP0F_BACSU
D:
[7-120]
--
K
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
----------------------
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
HHSearch
69.56
32%
-136
- C2 -
2QV0
-
MRKE_KLEPN
A:
[58-174]
-
M
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
L
I
N
T
H
----
S
Q
M
E
I
-
V
G
S
F
D
D
G
L
D
V
L
K
F
L
Q
-
H
N
K
V
D
A
I
F
L
D
I
N
I
--
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
F
A
H
----
K
P
F
I
V
F
I
T
A
W
--
K
E
H
--
A
V
--
E
--
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
E
S
R
I
I
N
M
L
Q
K
L
T
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
68.96
31%
-90
- C2 -
3Q15
1
SP0F_BACSU
C:
[7-120]
--
K
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
I
Q
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
74
Fugue
68.02
19%
-42
- C2 -
1NY5
8
?
A:
[1-384]
-
M
N
V
L
V
I
E
D
D
K
V
F
R
G
L
L
E
E
Y
L
S
M
K
----
G
--
I
K
-
V
E
S
A
E
R
G
K
E
A
Y
K
L
L
S
-
E
K
H
F
N
V
V
L
L
D
L
L
L
--
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
S
P
----
E
T
E
V
I
V
I
T
G
H
GT
I
K
T
--
A
V
--
E
--
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
L
L
R
R
E
K
D
L
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
----------------
E
C
P
V
L
I
T
G
E
S
G
V
-
G
K
E
V
V
A
R
L
I
H
K
L
S
D
R
S
K
E
P
F
V
A
L
N
------------------
V
A
S
I
P
R
D
I
F
E
A
E
L
F
G
YEKGAFTGAV
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
EIGELS
L
E
A
Q
A
K
L
L
R
V
I
E
SG
K
F
Y
R
LGGRK
E
I
E
V
N
V
R
I
L
A
A
T
NRN
I
K
E
L
V
K
E
GKFR
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
50
HHSearch
67.60
21%
43
- C3 -
4CBV
-
?
A:
[2-245]
--
K
V
L
I
L
E
D
V
I
E
H
Q
V
R
L
E
R
I
L
D
E
I
S
K
E
S
N
-
I
P
I
S
Y
K
T
T
G
K
V
R
E
F
E
E
Y
I
E
N
D
E
V
N
Q
L
Y
F
L
A
I
D
I
HG
I
E
K
K
G
F
E
V
A
Q
L
I
R
H
Y
N
P
----
Y
A
I
I
V
F
I
T
S
R
--
S
E
F
AT
L
T
--
Y
--
K
Y
Q
V
S
A
L
D
F
V
D
K
D
I
N
D
E
M
F
K
K
R
I
E
Q
N
I
F
Y
T
K
S
M
L
L
---
E
N
E
D
V
V
D
Y
F
D
Y
N
Y
K
G
N
D
L
K
I
P
Y
H
D
I
L
Y
I
E
T
T
G
V
S
H
K
L
R
I
I
G
K
N
F
A
K
E
F
Y
G
T
M
T
D
I
Q
E
K
D
K
H
T
Q
R
F
Y
--
S
P
H
K
S
F
L
V
N
I
G
N
I
R
E
I
D
R
K
-
N
L
--
E
I
V
F
Y
E
D
H
R
C
P
I
S
R
L
K
I
R
K
L
K
D
I
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
PsiBlast_CBE
65.27
31%
-86
- C2 -
1PEY
1
SP0F_BACSU
A:
[5-118]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
I
Q
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
64.53
30%
-82
- C2 -
1ZES
2
PHOB_ECOLI
A:
[4-123]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
----
G
--
F
Q
-
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
-
E
P
W
P
D
L
I
L
L
D
W
M
L
--
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
TRD
I
P
V
V
M
L
T
A
R
G
E
--
E
E
D
--
R
V
--
R
--
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
S
P
---
K
E
L
V
A
R
I
K
A
V
M
R
R
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
PsiBlast_CBE
64.45
33%
-87
- C2 -
1MVO
3
PHOP_BACSU
A:
[5-116]
--
K
I
L
V
V
D
D
E
E
S
I
V
T
L
L
Q
Y
N
L
E
R
S
----
G
--
Y
D
-
V
I
T
A
S
D
G
E
E
A
L
K
K
A
E
-
T
E
K
P
D
L
I
V
L
D
V
M
L
--
P
K
L
D
G
I
E
V
C
K
Q
L
R
Q
Q
K
L
----
M
F
P
I
L
M
L
T
A
K
--
D
E
E
--
F
D
--
K
V
L
G
L
E
L
G
A
D
D
Y
M
T
K
P
F
S
P
R
E
V
N
A
R
V
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
64.23
31%
-82
- C2 -
1PEY
1
SP0F_BACSU
C:
[5-118]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
IQ
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
63.85
31%
-99
- C2 -
1F51
1
SP0F_BACSU
F:
[3-116]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
IQ
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
63.34
32%
-102
- C2 -
4KNY
-
KDPE_ECOLI
A:
[3-119]
M
A
N
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
------
G
D
G
M
R
-
V
F
E
A
E
T
L
Q
R
G
L
L
E
A
A
-
T
R
K
P
D
L
I
I
L
D
L
G
L
--
P
D
G
D
G
I
E
F
I
R
D
L
R
Q
W
S
A
----
V
P
V
I
V
L
S
A
R
S
--
E
E
S
D
-
K
I
--
A
--
A
L
D
A
G
A
D
D
Y
L
S
K
P
F
G
I
G
E
L
Q
A
R
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.22
31%
-50
- C2 -
4IGA
3
CHEY_THEMA
A:
[7-121]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
----
G
Y
E
V
A
--
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
-
E
L
K
P
D
I
V
T
M
D
I
T
M
--
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
----
N
A
K
I
I
V
C
S
A
M
--
G
Q
Q
--
A
M
V
I
E
--
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
63.19
32%
-96
- C2 -
1ZH2
1
KDPE_ECOLI
A:
[2-113]
-
T
N
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
------
G
D
G
M
R
-
V
F
E
A
E
T
L
Q
R
G
L
L
E
A
A
-
T
R
K
P
D
L
I
I
L
D
L
G
L
--
P
D
G
D
G
I
E
F
I
R
D
L
R
Q
W
S
A
----
V
P
V
I
V
L
S
A
R
S
--
E
E
S
D
-
K
I
--
A
--
A
L
D
A
G
A
D
D
Y
L
S
K
P
F
G
I
G
E
L
Q
A
R
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
63.11
31%
-79
- C2 -
1SRR
1
SP0F_BACSU
C:
[5-118]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
IQ
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
62.71
31%
-93
- C2 -
1PEY
1
SP0F_BACSU
B:
[5-118]
--
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
----
G
--
Y
Q
-
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
-
K
E
R
P
D
L
V
L
L
D
M
K
I
--
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
D
E
----
N
I
R
V
I
I
M
T
A
Y
--
G
E
L
--
D
M
I
Q
E
--
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
62.70
31%
-62
- C2 -
2TMY
-
CHEY_THEMA
A:
[4-119]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
----
G
Y
E
V
A
--
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
-
E
L
K
P
D
I
V
T
M
D
I
T
M
--
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
----
N
A
K
I
I
V
C
S
A
M
--
G
Q
Q
--
A
M
V
I
E
--
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
Fugue
62.49
33%
-172
- C3 -
3D6W
3
?
A:
[1-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
V
V
T
L
K
T
T
D
G
W
I
P
V
P
F
S
K
V
M
Y
L
E
A
K
D
K
K
--
T
Y
V
N
A
E
E
L
T
G
T
H
K
Y
S
L
Q
E
F
E
Y
L
L
P
-
K
D
S
F
I
--
R
C
H
R
S
F
I
V
N
V
N
H
I
K
A
I
Y
P
D
T
H
S
T
F
L
L
S
M
D
N
G
E
R
V
P
V
S
Q
S
Y
A
S
Y
F
R
K
L
L
G
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
61.99
32%
-82
- C2 -
1ZH4
2
KDPE_ECOLI
A:
[1-113]
M
T
N
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
------
G
D
G
M
R
-
V
F
E
A
E
T
L
Q
R
G
L
L
E
A
A
-
T
R
K
P
D
L
I
I
L
D
L
G
L
--
P
D
G
D
G
I
E
F
I
R
D
L
R
Q
W
S
A
----
V
P
V
I
V
L
S
A
R
S
--
E
E
S
D
-
K
I
--
A
--
A
L
D
A
G
A
D
D
Y
L
S
K
P
F
G
I
G
E
L
Q
A
R
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.98
30%
-80
- C2 -
1B00
-
PHOB_ECOLI
A:
[4-123]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
----
G
--
F
Q
-
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
-
E
P
W
P
D
L
I
L
L
D
W
M
L
--
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
TRD
I
P
V
V
M
L
T
A
R
G
E
--
E
E
D
--
R
V
--
R
--
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
S
P
---
K
E
L
V
A
R
I
K
A
V
M
R
R
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
61.92
32%
-102
- C2 -
4KFC
-
KDPE_ECOLI
A:
[1-116]
M
A
N
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
------
G
D
G
M
R
-
V
F
E
A
E
T
L
Q
R
G
L
L
E
A
A
-
T
R
K
P
D
L
I
I
L
D
L
G
L
--
P
D
G
D
G
I
E
F
I
R
D
L
R
Q
W
S
A
----
V
P
V
I
V
L
S
A
R
S
--
E
E
S
D
-
K
I
--
A
--
A
L
D
A
G
A
D
D
Y
L
S
K
P
F
G
I
G
E
L
Q
A
R
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------