@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu30000: (2016-07-19 )
MNGRTLFFRRLFDYYKYQFKVLHAVIDWTVALYIVLPAIAFVIYQYIDLMNGRGLLYEWSEVAEWRWLYAVCVLIMFTGSIRTFLMEADKVFLLQKKEIIYQLKRYALLYSFLATLAKWLLLFFIVLPLISHSVLITFAESTALLCYLFGLHIFFLSLKQDRIRKPRSISRWIGDTLVRAILFAGSAILIVFTERHLLALFGILFLFFSVIRSLKKTASFTAFEAEVTEEKKSRLALAGLVMMMSQEAGMPKVKDRMRRKPLLYRNSKRIFKRRTICTGYKELFFKVMLRNGEYARQMYMLLSAFTVLIFVSPIWLKVIALLVYTGVCRYILTLIFDKVMDAPFLIGTDKESDEYYRARKSCINILHYAFAACCFLAAAVSLLFT
Atome Classification :
(20 SA)
------------.........10........20........30-.........40........50........60-...--.....70........80----------.........----------------------------90----.........--100.......110------------.........--120...------....130---...---------------------....------------.140.....------..150.......160----------.......170....---...180...-....190.......200----........210-.....----....220-......------.230.....-.---.240.......-----------250.......260...-....270......-------------.280.......290.......300.......310.......320...------....330.......340....----...350.......360.......370.......380...-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------MNG
R
T
L
F
F
R
R
L
F
D
Y
Y
K
Y
Q
F
K
V
L
H
A
V
I
D
W
T
V
--
A
L
Y
I
V
L
P
A
I
A
F
V
I
Y
Q
Y
I
D
L
MNGR
G
L
L
Y
E
W
S
E
-
V
A
E
--
W
R
W
L
Y
A
V
C
V
L
I
M
FTG
S
-----------
I
R
T
F
L
MEA
D
----------------------------
K
-----
V
F
L
L
Q
K
K
E
I
--
I
Y
Q
L
K
R
Y
A
L
L
Y
--------------
S
F
L
A
T
L
A
K
W
--
L
L
L
F
F
I
------
V
L
P
L
IS----H
S
V
---------------------
L
I
T
F------------A
E
S
T
A
L
L
C
Y
------
L
F
G
L
H
I
F
F
L
S
L
K
Q
D
R----------IRK
P
R
S
I
S
R
W
I
G
D
T
---
L
V
R
A
I
L
FAG-
S
A
I
L
I
V
FTE
R
H
L
L
A
L
F
-----
G
I
L
F
L
F
F
S
V
---
I
R
S
L
K
----
K
TASFTA-
F
E
A
E
V
T
------
E
E
K
K
S
R
L
A
L
-
A
---
G
L
V
M
M
M
SQEAG-----------M
P
K
V
K
D
R
M
RRKPLLYR-
N
S
K
R
I
F
K
R
R
T
I
C
T
-------------
G
Y
K
E
L
F
F
K
V
M
LRN
G
E
Y
A
R
Q
M
Y
M
L
L
S
A
F
T
V
L
I
FV
S
P
I
W
L
K
V
I
A
L
L
V
Y
T
------
G
V
C
R
Y
I
L
T
L
I
F
D
K
VMDA
P
F
L
I----GTDKE
S
D
E
Y
Y
R
A
R
K
S
C
I
N
I
L
H
Y
A
F
A
A
C
C
F
L
A
A
A
V
S
L
LFT-----------
16
Fugue
70.90
20%
-88
- C4 -
4ZOX
-
SQT1_YEAST
A:
[53-431]
------------
M
S
N
N
S
L
---
T
Y
F
D
K
H
T
D
S
V
F
A
I
G
H
H
P
N
L
P
L
--
V
C
T
G
G
G
D
N
L
A
H
L
W
T
S
H
S
Q
P
P
K
F
A
G
T
L
T
G
Y
G
E
S
V
I
S
--
C
S
F
T
S
E
G
G
F
L
V
T
A
D
M
S
-----------
G
K
V
L
V
H
M
G
Q
----------------------------
K
GGAQW
K
L
A
S
Q
M
Q
E
V
EE
I
V
W
L
K
T
H
P
T
I
A
--------------
R
T
F
A
F
G
A
T
D
G
S
V
W
C
Y
Q
I
N
EQDG
S
L
E
Q
L
M
S
----
G
F
V
HQQDCS
M
G
E
F
I
NTDKGENT
L
E
L
V
T
C
------------
S
L
D
S
T
I
V
A
W
------
N
C
F
T
G
Q
Q
L
F
K
I
T
Q
A
E
----------
I
K
G
L
E
A
--
P
W
I
S
L
S
---
L
A
P
E
T
L
T
K
G
N
S
G
V
V
A
C
G
S
N
N
G
L
L
A
V
I
N
CNNG
G
A
I
L
H
L
S
T
V
---
I
E
L
K
P
----
E
Q
D
E
L
D
A
S
I
E
S
I
S
W
------
S
S
K
F
S
L
M
A
I
-
G
L
VC
G
E
I
L
L
Y
D
T
S
A
W
-----------------
R
V
R
H
K
F
V
L
E
D
-
S
------------------------------
V
T
K
L
M
F
D
N
D
---------------
D
L
F
A
S
C
I
N
G
K
V
Y
Q
F
N
A
R
T
------
G
Q
E
K
F
V
C
V
G
H
N
M
G
V
L
D
F
I
L
L
H
----
P
V
A
N
T
G
T
E
Q
K
R
K
V
I
T
A
G
D
-------------
E
G
V
S
L
V
F
E
V
P
N--------
25
Fugue
66.56
15%
-67
- C3 -
1JVN
4
HIS5_YEAST
A:
[1-555]
GSH
M
P
V
V
H
V
I
D
V
E
S
G
N
L
Q
S
L
T
N
A
I
E
H
L
G
Y
E
V
Q
L
V
K
S
P
K
D
F
N
I
SG
T
S
R
L
I
L
P
G
V
G
N
-
Y
G
H
F
V
D
N
L
F
N
R
G
F
E
K
P
I
R
E
-
Y
I
E
S
G
K
P
I
M
G
I
V
G
L
Q
A
L
F
A
G
S
VESPKSTGLNY
I
D
F
K
L
S
R
F
D
DSEKPVPEI
G
W
N
S
C
IPSENLFFGLDPY
K
R
-----
Y
Y
F
V
H
S
F
A
A
--
I
L
N
S
E
K
K
K
N
L
E
N
D
G
W
K
I
A
K
A
K
Y
GS
E
E
F
I
A
A
V
N
K
N
--
N
I
F
A
T
Q
------
F
H
P
E
K
S
G
K
A
G
L
N
V
---------------------
I
E
N
F
L
K
QQSPPIPNYS
A
E
E
K
E
L
L
M
N
DYSNYG
L
T
R
R
I
I
A
C
L
D
V
R
T
N
D
QGDLVVTKGD
L
G
K
P
V
Q
L
A
Q
K
Y
Y
Q
Q
GAD
E
V
T
F
L
N
I
T
D
-
C
P
L
K
D
T
P
M
L
E
V
L
K
Q
A
A
-----
K
T
V
F
V
P
L
T
V
G
G
G
I
K
D
I
V
DVDG
T
K
I
P
A
L
E
-
V
A
S
L
Y
F
------
R
S
G
A
D
K
V
S
I
-
G
---
T
D
A
V
Y
A
A
E
K
Y
Y
E
L
GNRGDGTS
P
I
E
T
I
S
K
A
Y
G
A
Q
A
V
V
I
S
V
D
P
K
R
V
Y
V
N
S
Q
A
D
T
K
N
K
V
F
E
T
EYPGPN
G
E
K
Y
C
W
Y
Q
C
T
I
K
G
G
R
E
S
R
D
L
G
----
V
W
E
L
T
R
A
C
E
A
L
G
A
G
E
I
L
L
N
C
I
D
KDGSNS
G
Y
D
L
E
L
I
E
H
V
K
D
A
V
-
K
I
P
V
I
A
S
S
GA
G
V
P
E
H
F
E
E
A
F
L
K
T
R
A
D
A
C
L
G
A
G
M
F
H
R
G
E
F
T
V
N
D
V
K
E
Y
L
L
E
H
G
L
K
V
R
M
D
E
E
21
Fugue
28.32
26%
-273
- C5 -
1DTC
-
?
?:
[1-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
Q
D
I
----------
I
S
T
I
G
D
L
V
K
W
I
I
D
T
---
V
N
K
F
T
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
27.18
40%
-81
- C5 -
4ZGX
1
C11B2_HUMAN
A:
[176-230]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
N
--
L
A
L
F
G
E
------
R
L
G
L
V
G
----
H
S
---------------------------------------
P
S
S
A
S
L
N
F
------
L
H
A
L
E
V
M
F
K
S
T
V
Q
-
L
----------
M
F
M
P
R
S
L
S
R
W
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
27.06
50%
-
- C2 -
2LR1
-
B:
[14-19]
-----------------
L
W
Q
R
R
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
26.79
40%
-86
- C5 -
4DVQ
1
C11B2_HUMAN
A:
[173-228]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
N
--
L
A
L
F
G
E
------
R
L
G
L
V
G
----
H
S
---------------------------------------
P
S
S
A
S
L
N
F
------
L
H
A
L
E
V
M
F
K
S
T
V
Q
-
L
----------
M
F
M
P
R
S
L
S
R
W
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
25.81
40%
-47
- C5 -
4FDH
1
C11B2_HUMAN
A:
[173-228]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
N
--
L
A
L
F
G
E
------
R
L
G
L
V
G
----
H
S
---------------------------------------
P
S
S
A
S
L
N
F
------
L
H
A
L
E
V
M
F
K
S
T
V
Q
-
L
----------
M
F
M
P
R
S
L
S
R
W
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
24.59
22%
-45
- C5 -
3F5H
-
?
A:
[12-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
D
D
L
D
------
A
E
A
L
I
R
M
A
L
G
P
---
R
N
T
M
T
S
S
N
E
Q
L
-----------
V
D
A
L
R
A
S
L
K
E
N
E
E
L
R
K
-
E
S
R
R
R
A
D
R
R
Q
------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
23.35
44%
-94
- C5 -
1ZRV
-
SPING_PSEUS
A:
[5-20]
-----------------------------------------------------------------------------------------------------------------
K
V
A
D
----------------------------
K
-----
V
L
L
L
K
Q
L
R
I
--
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
21.28
16%
-46
* C5 *
2F95
-
HTR2_NATPH
B:
[24-76]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
V
-----
G
A
L
T
V
L
F
G
A
---
I
A
Y
G
E
----
V
T
A
A
A
A
T
-
G
D
A
A
A
V
------
Q
E
A
A
V
S
A
I
L
-
G
---
L
I
I
L
L
G
I
N
L
G
L
-----------
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
19.48
9%
-206
- C5 -
4XTT
-
?
A:
[60-82]
-------------------------------------------------------------------------------------------------------------
N
I
N
L
E
I
G
D
----------------------------
I
-----
L
I
M
I
G
H
D
N
D
--
L
N
R
F
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
18.67
16%
-58
- C5 -
1H2S
-
HTR2_NATPH
B:
[1-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
V
F
I
F
V
G
A
---
L
T
V
L
F
----
G
A
I
A
Y
G
E
-
V
T
A
A
A
A
T
GD
A
A
A
V
Q
E
A
A
V
S
A
I
-
L
---
G
L
I
I
L
L
G
I
N
L
G
-----------
L
V
A
A
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
18.20
27%
-40
- C5 -
4I2W
-
?
A:
[826-869]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
A
E
V
E
------
E
E
R
L
S
R
A
S
A
-
A
---
G
F
A
I
L
T
E
D
E
N
A
-----------
C
A
R
I
M
D
E
I
K
S
W
P
E
V
F
K
-
D
---------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
18.03
27%
-42
- C5 -
4I2Z
-
?
A:
[826-869]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
A
E
V
E
------
E
E
R
L
S
R
A
S
A
-
A
---
G
F
A
I
L
T
E
D
E
N
A
-----------
C
A
R
I
M
D
E
I
K
S
W
P
E
V
F
K
-
D
---------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
14.08
26%
86
- C5 -
1JDH
-
TF7L2_HUMAN
B:
[12-49]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
----
A
N
D
E
L
I
S
-
F
K
D
E
G
E
------
Q
E
E
K
S
S
E
N
-----------
S
S
A
E
R
D
-----------
L
A
D
V
K
S
S
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
13.74
17%
114
- C5 -
2QFA
-
INCE_HUMAN
C:
[27-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
N
K
D
L
V
-
W
L
E
E
I
Q
------
E
E
A
E
R
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
12.26
18%
51
- C5 -
2JPW
2
TNNI3_MOUSE
A:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
D
E
S
S
-----------
D
A
A
G
E
P
Q
P
A
P
A
P
V
R
R
R
-
S
S
A
N
Y
R
A
Y
A
T
------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
12.14
33%
42
- C5 -
1WN4
-
A:
[10-21]
---------------------------------------------------------------------------------------------------------------
L
L
E
E
A
L
----------------------------
V
-----
A
F
A
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
11.57
23%
75
- C5 -
4JHK
1
?
C:
[7-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
K
N
-
W
G
D
E
V
E
------
E
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
10.45
4%
125
- C5 -
3A7M
-
FLIT_SALTY
A:
[26-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
G
E
-
W
D
L
L
L
Q
------
Q
E
V
S
Y
L
Q
S
I
-
E
---
T
V
M
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------