@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu30430: (2016-07-20 )
MPDSGLLYKEWRQNKVALVITILVFILGNPLSILNMYLIYQGCVTGKENWVGPCVFSVDYLNSSFISLFWIWGVVLAVSQLGIERSKSFFDFTLSLPYTRGQIFHAKFLTGGMVIVVPQLIGYVLSVLLIMLLKPDQAVYFHNYSLGMIIVSMLAYSLVMAGGALTGNSFAQLLVSFTVAISPFLLISLPVINLEILFGGSIDFIHGPVPKWVQYFIPIIYVDSKWAENSPYYLVIPAIMTIIFYIIGYISFVKMSNERNGYFFLWKPLNRPVQIIVIIIGIMGFGYFGFTASESFAGYLIGMGTGAVIGFLISYFAIYKKMKLL
Atome Classification :
(20 SA)
.-........10........--------------20----------.-----....-...30.........----------------40........50...-....--.60.--------...-....70......---..80........90........100..-..-----..----------.110.......120----........130.......140......-.150--......---.160.......170.....----..180.......190...-------....200.......210.......220-.......-..-230....---------...240......----------.250.......260..--.....270.....----..280---.........290.-.------------...-----------..300.......310..-----.....320...---------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M-PDSG
L
L
Y
K
E
WRQNK
V
A
L
V
--------------
I
T
----------
I
-----
L
V
F
I
-LGN
P
-
L
S
I
L
N
M
Y
L
I
----------------
Y
QGCVTGKENW
V
G
P
C
-
V
F
S
V
--
D
Y
LN--------
S
S
F
-
I
S
L
F
W
I
W
G
V
V
L
A
---
V
S
Q
LGIERSK
S
F
F
D
F
T
L
SLPYTRG
Q
I
F
-
H
A
-----
K
F----------LTG
G
M
V
I
V
V
P
Q
L
I
-----
G
Y
V
L
S
V
L
L
I
M
LLKPD
Q
A
V
Y
F
HNY
S
L
G
M
-
I
I
V
S
--
M
L
A
Y
S
L
---
V
MAGGALT
G
N
S
F
A
Q
L
L
V
S
F
----
T
V
A
IS
P
F
L
L
I
S
L
P
V
I
N
L
E
-------
I
L
FGGS
I
D
FIHGP
V
P
K
W
V
Q
Y
F
I
P
I
I
---
Y
VDSKWA-EN-S
P
Y
Y
L
V
I
---------
P
A
I
M
T
I
I
F
Y
I
I
G
----------
Y
I
S
F
V
KMSNERN
G
Y
F
F
--
L
WKPLNR
P
V
Q
I
I
V
----
I
I
I
-----
G
I
M
GFGYFGFTAS-E------------SF
A
-----------
G
Y
L
I
GM
G
T
G
A
V
I
G
F
L
I
S
-----
Y
F
A
I
Y
K
K
MKLL---------------------------------------------------
39
Fugue
62.22
20%
-102
- C6 -
3FHC
-
NU214_HUMAN
A:
[9-405]
I
-
P
E
R
E
M
K
D
F
Q
F
R
A
L
K
K
V
R
I
FDSPEELPKER
S
S
L
L
A
----------
V
SNKYG
L
V
F
A
-
G
G
A
S
G
L
Q
I
F
P
T
K
N
L
L
I
Q
N
K
PGDDPNKIVD
K
V
Q
G
L
L
V
P
M
K
F
P
I
H
H
L
-
A
L
S
C
--
D
N
L
T
--------
L
S
A
-
C
M
M
S
S
E
Y
G
S
I
I
A
F
F
D
V
R
T
F
S
N
E
A
Q
K
R
P
F
A
Y
H
K
L
L
K
D
A
G
G
M
V
I
-
D
M
-----
K
W
----------
N
P
-----
T
V
P
S
M
V
-----
A
V
C
L
A
D
G
S
I
A
V
L
Q
V
T
E
T
V
K
V
C
A
T
L
P
S
T
-
V
A
V
T
--
S
V
C
W
S
P
KGK
Q
L
A
V
G
K
Q
N
G
-
T
V
V
Q
Y
L
P
T
L
QEK
K
V
I
P
C
P
P
F
Y
E
S
D
H
P
V
R
V
L
D
-------
V
L
W
I
G
T
-------------
Y
V
F
A
I
V
---
Y
A
A
A
D
G
T
L
E
T
-
S
P
D
V
V
M
A
L
L
P
KKEEK
H
P
E
I
F
V
N
F
M
E
P
C
Y
GSCTERQ
H
H
Y
Y
L
S
Y
I
----
E
E
W
D
L
V
L
--
A
A
S
A
A
S
T
E
V
S
I
L
A
----
R
Q
S
-----
D
Q
I
N
W
E
S
W
L
L
E
D
S
-
S
RA
E
L
P
V
T
DKS
D
D
S
L
P
-----------
M
G
V
V
V
D
Y
T
N
A
P
V
L
M
L
L
S
-----
T
D
G
V
L
C
P
F
Y
M
I
N--------------------------------------------------
31
Fugue
57.87
16%
-70
* C8 *
4P5F
1
?
A:
[8-374]
L
T
P
T
E
A
A
V
L
R
E
L
R
L
H
R
P
Q
L
P
--------------
L
D
----------
T
-----
L
L
F
T
D
P
N
K
D
-
P
D
D
V
V
T
Y
T
I
----------------
A
K
Q
L
Q
A
D
G
F
L
R
L
T
D
V
-
V
V
T
L
G
D
A
D
M
R
--------
S
Q
R
-
A
Q
L
A
K
G
V
F
D
R
L
A
---
L
P
D
V
R
V
A
R
G
Q
D
Y
-------
P
M
T
S
T
Q
A
R
E
H
S
-----
K
F
----------
L
A
E
G
A
A
L
R
A
A
----------
P
D
A
V
H
T
D
G
V
R
A
M
C
E
R
L
A
T
S
P
H
K
L
G
M
-
V
V
I
A
GM
T
D
A
S
A
L
---
L
A
E
A
G
D
L
V
R
E
K
V
A
S
I
T
I
M
G
----
G
I
D
P
A
R
D
A
D
G
L
V
Q
P
D
T
R
A
-------
Y
N
N
A
T
D
I
H
A
A
R
A
L
Y
R
R
A
Q
Q
L
G
I
P
L
R
---
I
L
T
K
E
A
A
-
Y
K
-
A
A
---
V
P
---------
P
A
F
Y
E
G
I
A
R
N
G
H
----------
P
V
G
E
Y
L
R
D
V
Q
K
N
A
L
K
G
--
L
W
E
G
I
Q
A
N
L
----------------------
I
P
G
L
D
T
A
-
W
------------
F
F
R
-----------
T
F
V
A
G
A
L
S
F
D
A
I
W
P
Q
V
T
-----
K
L
N
L
Y
D
P
L
T
L
L
A
A
L
P
G
T
A
R
L
LFQPTPMHREGAS
P
V
E
H
V
G
HAEVVR
P
E
K
A
R
L
L
L
S
A
L
A
K
A
A
L
V
33
Fugue
50.95
12%
-139
- C4 -
4I1O
3
?
B:
[12-302]
-----
P
L
T
L
L
M
T
S
S
T
S
F
S
E
T
--------------
I
N
----------
Q
-----
W
A
D
I
-
L
K
T
M
------------------------------------------------
E
K
F
D
--------
S
N
P
-
I
N
L
L
E
L
V
K
Q
F
N
L
---
Y
V
D
E
L
A
I
T
C
E
A
N
N
V
W
A
S
T
P
N
L
F
A
L
Y
D
N
-
S
G
-----
G
E
----------
A
I
H
G
H
A
F
V
P
Y
---------
Y
K
E
S
I
V
L
R
R
L
F
T
V
D
P
N
------
T
F
N
L
-
S
R
F
A
--
A
F
E
G
P
C
---
Q
L
Y
C
A
A
H
A
D
S
A
W
V
K
I
Q
T
L
L
----
T
L
G
N
G
--
I
I
N
T
L
K
I
I
K
Q
A
-------
Q
A
F
G
-
I
D
E
A
V
T
E
N
L
K
A
L
K
E
Q
F
I
A
F
Q
---
L
A
E
A
D
I
K
-
E
S
L
K
A
P
S
F
A
E
---------
P
N
K
E
S
E
F
F
Y
P
I
D
----------
E
K
A
L
A
K
M
N
G
Y
Q
L
A
T
I
C
--
L
E
E
L
N
S
P
K
P
S
--
P
----
L
I
E
-----
R
I
L
S
N
K
K
F
W
K
R
I
N
-
S
------------
A
F
E
-----------
S
G
V
F
K
G
R
T
D
D
P
A
G
K
I
A
K
-----
I
R
E
W
H
Q
L
L
Q
I
S
G--------------------------------------------------
34
Fugue
50.24
17%
-158
- C8 -
5AZB
11
LGT_ECOLI
A:
[4-287]
------------------------------------------------------------------
S
S
Y
L
H
----------------
F
P
E
--------
F
D
P
V
-
I
F
S
I
--
G
P
V
A
--------
L
H
W
-
Y
G
L
M
Y
L
V
G
F
I
F
A
---
M
-
W
L
A
T
R
R
A
N
-----
R
P
G
S
G
W
T
K
N
E
V
E
-
N
L
------
L
----------
Y
A
G
F
L
G
V
F
L
G
G
R
I
-----
G
Y
V
L
F
Y
N
F
P
Q
F
M
A
-
D
P
L
Y
L
F
R
V
W
D
G
G
M
S
F
H
G
G
--
L
I
G
V
I
V
---
V
M
I
I
F
A
R
R
T
K
---
R
S
F
F
Q
V
----
S
D
F
I
A
P
L
I
P
F
G
L
G
A
G
R
L
G
-------
N
F
I
N
G
E
L
W
G
R
V
D
P
N
F
P
F
A
M
L
F
P
G
S
R
---
T
E
D
I
L
L
L
-
Q
T
-
N
P
Q
W
Q
S
I
---------
F
D
T
Y
G
V
L
P
R
H
------------
P
S
Q
L
Y
E
L
L
L
E
G
V
V
L
F
I
--
I
L
N
L
Y
I
R
K
P
R
P
M
G
----
A
V
S
-----
G
L
F
L
I
G
Y
G
A
F
R
I
I
-
V
------------
E
F
F
RQPD
A
Q
F
T
G
A
W
V
Q
Y
I
S
M
G
Q
I
L
S
I
P
M
I
V
A
-----
G
V
I
M
M
V
W
A
Y
R
R
S
P-------------------------------------------------
38
Fugue
49.12
13%
-66
- C7 -
3TW5
2
?
A:
[1-366]
-------------
E
A
N
G
N
Q
D
--------------
I
A
----------
K
-----
L
E
A
Y
-
F
G
T
K
-
M
E
-
M
T
L
K
D
L
----------------
P
T
V
G
V
H
T
P
S
P
W
A
G
P
Y
W
P
T
Y
Q
--
D
S
I
N
VQWSQGQP
S
A
A
-
E
K
Y
A
K
A
F
G
K
D
V
K
---
T
F
M
D
A
V
S
K
K
N
G
I
D
S
Q
S
G
R
K
K
C
S
S
D
D
D
C
-
S
T
-----
L
T
DGS
S
C
S
I
R
TG
K
T
S
G
Y
C
I
P
T
W
F
G
I
-----
S
H
A
W
S
P
A
A
I
L
E
T
E
P
K
C
P
V
K
H
N
G
V
T
F
Q
P
-
M
D
L
K
--
A
L
V
S
L
V
---
Y
D
G
A
R
V
Q
T
V
F
T
G
D
L
N
P
A
Y
F
----
H
I
A
S
A
N
I
L
G
K
L
N
S
T
F
V
A
D
-------
V
T
A
G
A
E
V
--
W
N
Q
P
V
R
G
F
K
V
Y
E
Q
T
E
M
T
L
E
E
G
A
Q
T
F
Y
-
G
L
-
E
A
Y
P
W
-----------
N
A
A
A
K
S
L
V
Y
V
K
S
----------
R
L
S
W
I
Y
E
T
Y
T
D
G
G
L
V
S
SG
Q
I
D
K
F
T
T
G
Q
Y
Y
Y
Y
----
L
L
E
L
D
DAG
E
I
I
G
-
G
E
W
V
Y
G
S
D
-
D
------------
D
H
P
-----------
D
F
L
W
L
P
K
A
K
P
A
A
N
T
V
T
S
-----
V
G
L
S
Y
A
D
V
S
M
L
L
K
K
S
A
A
CT-------------------------------------------
30
Fugue
47.67
18%
-71
- C5 -
5AYC
3
?
A:
[1-386]
M
-
I
H
E
--
K
Y
T
E
M
R
N
E
Q
E
A
L
L
--------------
S
R
K
N
T
K
T
SFYNG
I
-----
Y
D
R
Y
-
E
H
P
V
-
L
T
R
E
H
I
P
L
H
----------------
W
R
Y
D
L
N
K
E
T
N
---
P
F
-
F
Q
E
R
--
L
G
I
N
--------
A
V
F
N
A
G
A
I
K
L
N
D
R
Y
C
L
---
V
A
R
V
E
G
N
D
R
K
S
F
F
A
V
A
E
S
D
K
G
T
E
G
F
R
F
-
R
Q
YPVCL
P
A
----------
L
T
D
D
E
T
N
V
Y
D
M
R
L
T
QHED
G
W
I
Y
G
V
F
C
V
E
K
S
A
G
T
A
D
L
S
E
A
V
A
S
A
G
I
-
A
R
T
K
--
D
L
T
-
N
W
---
E
R
L
P
D
L
V
T
L
R
S
P
Q
Q
R
N
V
T
L
L
P--
E
F
V
D
G
K
Y
A
F
Y
T
R
P
M
D
G
F
I
ETGSGG
G
I
G
F
G
L
A
D
D
I
T
H
A
V
I
D
E
E
R
M
T
S
I
R
R
Y
---
H
T
I
T
----
E
S
-
K
N
G
A
G
A
T
---------
P
I
K
T
E
R
G
W
L
N
I
A
----------
H
G
V
R
N
T
A
A
G
L
R
Y
V
I
Y
C
--
F
V
T
D
L
S
E
P
W
K
V
I
A
EPGG
Y
L
I
-----
A
P
F
K
D
E
R
V
G
D
V
S
N
-
V
------------
V
F
T
-----------
N
G
A
I
V
D
D
N
G
D
V
Y
I
Y
Y
A
S
SD
T
R
L
H
V
A
V
S
S
I
D
K
L
L
D
Y
A
F
N
TPADALR
T
A
E
C
V
K
Q
R
C
D
L
I
K
R
N
I
E
L
L--------------------
28
HHSearch
32.15
15%
-272
- C9 -
2LX0
-
?
A:
[10-29]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---------
G
L
V
A
L
L
T
F
L
A
F
G
----------
F
W
L
F
K
Y
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
31.04
13%
-272
- C9 -
4B19
-
?
A:
[6-29]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
I
A
---------
P
V
I
S
G
C
A
I
A
F
F
S
----------
Y
W
L
S
R
R
N
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
30.32
30%
-128
- C9 -
1MAH
-
ACES_MOUSE
A:
[98-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
4
PsiBlast_PDB
29.87
30%
-142
- C9 -
1N5R
1
ACES_MOUSE
A:
[98-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
19
PsiBlast_PDB
29.80
30%
-135
- C9 -
5EIA
1
ACES_MOUSE
A:
[98-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
9
PsiBlast_PDB
29.78
30%
-127
- C9 -
2GYU
1
ACES_MOUSE
A:
[98-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
20
PsiBlast_PDB
29.75
30%
-134
- C9 -
5EIE
2
ACES_MOUSE
A:
[98-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
8
PsiBlast_PDB
29.65
30%
-135
- C9 -
2HA3
2
ACES_MOUSE
A:
[98-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
18
PsiBlast_PDB
29.60
30%
-133
- C9 -
5EHZ
1
ACES_MOUSE
A:
[98-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
6
PsiBlast_PDB
29.59
30%
-128
- C9 -
2HA0
2
ACES_MOUSE
A:
[98-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
7
PsiBlast_PDB
29.50
30%
-125
- C9 -
2HA2
1
ACES_MOUSE
A:
[98-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
10
PsiBlast_PDB
29.42
30%
-130
- C9 -
2GYV
2
ACES_MOUSE
A:
[98-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
14
PsiBlast_PDB
29.35
30%
-135
- C9 -
4BC1
2
ACES_MOUSE
A:
[98-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------
2
PsiBlast_PDB
29.25
30%
-129
- C9 -
1J06
2
ACES_MOUSE
A:
[98-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
N
--
V
W
T
P
Y
P
R
P
A
S
P
T
P
----
V
L
I
-----
W
I
Y
G
G
G
F
Y
S
G
A
A
S
L
D
------------
V
Y
D
-----------
G
R
F
L
A
Q
V
E
G
A
V
L
------------------------------------------------------------------------