@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31430: (2016-07-22 )
MEESHAVREMIKIIAKWDPFKYGEEFYETEAVDVVQAVYDENDPDLLAKSIQQIFETSFEQTLPIASCREVAGQLLFIKNSSSCTP
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....-.-..----20........30........40--.---------------..--------.---..--...50........60...-----.....-70....--....80.....-----------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME
E
S
H
A
V
R
E
M
I
K
I
I
AK-W-D
P
----
F
K
Y
G
E
E
F
Y
E
T
E
A
V
D
V
V
Q
A
V
YD---E---------------N
D
--------
P
---
D
L
--
L
A
K
S
I
Q
Q
I
F
E
T
S
F
E
QTL
P
-----
I
A
S
C
R
-
E
VAG
Q
L
--
L
F
I
KNSSSCTP-----------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
96.93
38%
-180
- C7 -
1U84
2
?
A:
[6-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
Q
L
N
R
L
L
L
E
W
I
G
A
-
W
-
D
P
----
F
G
L
G
K
D
A
Y
D
V
E
A
A
S
V
L
Q
A
V
Y
E
---
T
---------------
E
D
--------
A
---
R
T
--
L
A
A
R
I
Q
S
I
Y
E
F
A
F
D
E
P
I
P
-----
F
P
H
C
L
-
K
L
A
R
R
L
--
L
E
L
K
Q
A
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
96.38
37%
-180
- C7 -
1U84
2
?
A:
[6-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
Q
L
N
R
L
L
L
E
W
I
G
A
-
W
-
D
P
----
F
G
L
G
K
D
A
Y
D
V
E
A
A
S
V
L
Q
A
V
Y
E
---
T
---------------
E
D
--------
A
---
R
T
--
L
A
A
R
I
Q
S
I
Y
E
F
A
F
D
E
P
I
P
-----
F
P
H
C
L
-
K
L
A
R
R
L
--
L
E
L
K
Q
A
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
96.38
37%
-180
- C7 -
1U84
2
?
A:
[6-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
Q
L
N
R
L
L
L
E
W
I
G
A
-
W
-
D
P
----
F
G
L
G
K
D
A
Y
D
V
E
A
A
S
V
L
Q
A
V
Y
E
---
T
---------------
E
D
--------
A
---
R
T
--
L
A
A
R
I
Q
S
I
Y
E
F
A
F
D
E
P
I
P
-----
F
P
H
C
L
-
K
L
A
R
R
L
--
L
E
L
K
Q
A
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
94.80
32%
-179
- C7 -
3R2X
-
?
C:
[6-87]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
Q
Q
L
N
R
L
L
L
E
W
I
G
A
-
W
-
D
P
----
F
G
L
G
K
D
A
Y
D
V
E
A
E
A
V
L
Q
A
V
Y
E
---
T
---------------
E
S
--------
A
---
F
D
--
L
A
M
R
I
M
W
I
Y
V
F
A
F
N
R
P
I
P
-----
F
P
H
A
Q
-
K
L
A
R
R
L
--
L
E
L
K
Q
A
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
47.41
22%
-113
- C7 -
1BIA
-
?
?:
[1-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
D
N
T
V
P
L
K
L
I
A
L
L
A
N
---
G
E
----
F
H
S
G
E
Q
L
G
E
T
L
G
M
S
------------------------------------
R
---
A
A
--
I
N
K
H
I
Q
T
L
R
D
W
G
V
----
D
-----
V
F
T
V
P
-
G
----------
K
G
Y
S
L
P
E
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
43.84
21%
-138
- C7 -
3RJS
-
?
A:
[28-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
E
K
---
Y
---------------
N
I
--------
E
---
K
D
--
I
A
A
F
I
K
K
E
F
D
R
K
H
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
42.31
18%
-47
- C4 -
4BSM
-
XPO1_HUMAN
A:
[3-1017]
A
I
M
T
M
L
A
D
H
A
A
R
Q
L
L
D
F
SQKL
D
I
N
L
L
D
N
V
V
N
C
L
Y
H
G
E
G
A
Q
Q
R
M
A
Q
E
V
L
T
H
L
K
EH
P
D
A
W
T
R
V
D
TQ
N
M
N
T
K
Y
Y
G
L
Q
I
L
E
N
V
I
K
T
RWKILP
R
N
Q
C
E
G
I
K
K
Y
V
V
G
L
I
I
K
T
S
S
DPTCVEKEK
V
Y
I
G
K
L
N
M
I
L
V
Q
I
L
K
Q
E
WPKHWPT
F
I
S
D
I
V
G
A
S
RTS
E
S
L
C
Q
N
N
M
V
I
L
K
L
L
S
E
E
VIT
Q
V
K
S
K
H
L
K
D
S
M
C
N
E
F
S
Q
I
F
Q
L
C
Q
F
V
M
E
NSQN
A
P
L
V
H
A
T
L
E
T
L
L
R
F
LNWIPLGYIFETK
L
I
S
T
L
I
YKFLNVPMF
R
N
V
S
L
K
C
L
T
E
I
A
G
VSVSQYE
E
Q
F
V
T
L
F
T
L
T
M
M
Q
L
K
Q
M
LPLNTN
I
R
L
A
Y
S
N
GK
D
D
E
Q
N
F
I
Q
N
L
S
L
F
L
C
T
F
L
K
E
H
D
Q
L
I
E
K
R
LNL
R
E
T
L
M
E
A
L
H
Y
M
L
L
V
S
E
VEETE
I
F
K
I
C
L
E
Y
W
N
H
L
A
A
E
L
Y
R
E
SPFSTSASPHFDVP
P
R
R
Q
L
Y
LPM
L
F
K
V
R
L
L
M
V
S
R
MAKPEE
V
L
V
V
E
N
DQG
E
V
V
R
E
F
MKDT
D
S
I
N
L
Y
K
N
M
R
E
T
L
V
Y
L
T
H
L
D
Y
V
D
T
E
R
I
M
T
E
K
L
H
N
Q
V
N
GTEWS
W
K
N
L
N
T
L
C
W
A
I
G
S
I
SGAMH
E
E
D
E
K
R
F
L
V
T
V
I
K
D
L
L
G
L
C
E
Q
KRG
K
D
N
K
A
I
I
A
S
N
I
M
Y
I
V
G
Q
Y
P
R
F
L
R
A
H
W
K
F
L
K
T
V
V
N
K
L
F
E
F
M
H
ETHDG
V
Q
D
M
A
C
D
T
F
I
K
I
A
Q
K
C
R
R
H
F
V
QVQVGEVMP
F
I
D
E
I
L
N
N
INTIICDLQ
P
Q
Q
V
H
T
F
Y
E
A
V
G
Y
M
I
G
A
QTDQT
V
Q
E
H
L
I
E
K
Y
M
L
L
P
N
Q
V
W
D
SI
L
K
T
N
V
R
A
C
K
A
VGHPF
V
I
Q
L
G
R
I
Y
L
D
M
L
N
V
Y
K
C
L
S
E
N
I
S
A
A
I
Q
A
NMVTKQ
P
L
I
R
S
M
R
T
V
K
R
E
T
L
K
L
I
S
G
-
W
-
V
S
R
SND
P
Q
M
V
A
E
N
F
V
P
P
L
L
D
A
V
L
I
D
Y
Q
---
R
---------------
N
V
--------
P
---
A
A
--
E
V
L
S
T
M
A
I
I
V
N
K
L
H
I
T
A
E
-----
I
P
Q
I
F
-
D
A
V
F
E
C
--
T
L
N
M
I
N
K
D
E
Y
P
E
H
R
T
N
F
F
L
L
L
Q
A
V
N
S
H
CFP
P
T
Q
F
K
L
V
L
D
S
I
I
W
A
F
K
HTMRNVA
D
T
G
L
Q
I
L
F
T
L
L
Q
N
VAQEEAAAQSFYQTY
F
C
D
I
L
Q
H
I
F
SVVTNLVEEGKL
Q
E
Y
V
A
NP
A
F
K
E
H
L
R
D-------------------------------------------------
3
PsiBlast_PDB
41.97
43%
-125
- C7 -
4E98
-
CUTA_CRYPI
A:
[81-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
D
---
E
---------------
N
E
--------
V
---
M
L
--
L
V
K
T
T
S
Q
L
F
T
T
L
K
E
K
V
T
E
-----
I
H
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.54
17%
-69
- C7 -
1YO3
-
?
A:
[23-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
K
---
Y
---------------
N
V
--------
E
---
K
D
--
I
A
A
H
I
K
K
E
F
D
R
K
Y
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
40.39
40%
-113
- C1 -
4DTH
-
A:
[248-257]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
N
E
-
W
-
D
P
----
M
S
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.98
8%
-116
- C7 -
4DS1
1
DYL1_YEAST
A:
[36-59]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
D
K
---
Y
---------------
Q
L
--------
E
---
R
D
--
I
A
G
T
V
K
K
Q
L
D
V
K
Y
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
35.66
15%
7
- C7 -
4I9O
3
A:
[32-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
H
K
L
V
Q
A
I
F
P
---
T
---------------
P
D
PAALK
D
R
R
M
---
E
N
--
L
V
A
Y
A
K
K
V
E
G
D
M
Y
E
S
A
N
S
-----
R
D
E
Y
Y
H
L
L
A
E
K
I
--
Y
K
I
Q
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
34.81
19%
5
- C6 -
4C0K
8
MIRO_DROME
A:
[6-409]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELT
S
A
C
K
K
S
L
V
R
I
F
K
I
C
DIDGDNLLN
D
Y
E
L
N
L
F
Q
R
R
C
FNTPLQ
P
Q
I
L
D
E
V
K
A
V
I
Q
K
NVPDGIYNDAVT
L
K
G
F
L
F
L
H
C
L
F
I
Q
R
GR
N
E
T
T
W
A
V
L
R
R
F
GYNDQLEMCQEYLR
P
P
L
K
I
P
PG
S
S
T
E
L
S
H
R
G
Q
Q
F
L
I
A
V
F
E
R
Y
DRDGDGALS
P
E
E
H
K
M
L
F
S
TCPAAPWSYSTD
I
R
K
S
C
PINETTGWVT
L
H
G
W
L
C
R
W
T
L
M
T
L
I
D
V
V
K
T
M
E
Y
L
A
Y
L
G
F
N
V
H
E
NDSQLAA
I
H
V
T
R
E
R
R
IDLAK
R
Q
S
S
R
S
V
Y
K
C
H
V
I
G
P
K
GSG
K
T
G
M
C
R
G
F
L
V
EDMHKLIGKEFKTNVV
N
C
I
N
S
V
Q
V
Y
G
Q
E
K
H
L
I
L
R
D
I
D
V
R
H
A
-
L
-
D
P
----
L
Q
P
Q
E
V
-----
N
C
D
V
A
C
L
V
Y
D
---
S
---------------
S
N
--------
P
RSF
E
Y
--
V
A
R
I
Y
I
K
Y
Y
A
E
S
K
I
P
V
M
I
-----
V
G
T
K
C
-
D
M
D
E
R
------
R
Q
D
Y
L
M
Q
P
S
E
F
C
D
K
Y
KLL
P
P
H
L
F
S
LKTNKK
E
L
Y
T
K
L
A
T
M
A
A
F
PH-----------------------------------------------------------------------------------------------------------------------
22
Fugue
34.76
17%
54
- C7 -
2HUO
5
MIOX_MOUSE
A:
[32-289]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FRNYTSGPL
L
D
R
V
F
T
T
Y
K
L
M
H
T
H
Q
T
V
D
F
V
S
R
K
R
I
Q
-
Y
-
G
S
----
F
S
Y
-
K
K
M
T
I
M
E
A
V
G
M
L
D
D
L
V
D
---
E
---------------
S
D
--------
P
---
D
V
--
D
F
P
N
S
F
H
A
F
Q
T
A
-
E
G
I
R
K
-----
A
H
P
D
K
-
D
W
F
H
L
V
--
G
L
L
H
D
L
G
K
I
M
A
LWGEPQWAVV
G
D
T
F
P
V
GCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWG
H
D
E
Y
L
Y
Q
M
M
K
F
N
KFSLP
S
E
A
F
Y
M
I
R
F
H
SFYPWHTGGDYRQLCS
Q
Q
D
L
D
M
L
P
W
V
Q
E
F
N
K
F
D
L
YTKCPDLPDVESL
R
P
Y
Y
Q
G
L
I
D
K
YCPGTLSW
25
Fugue
33.59
10%
116
- C7 -
1P68
-
?
A:
[1-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYGK
L
N
D
L
L
E
D
L
Q
E
V
L
K
N
L
H
K
N
W
-
H
G
----
G
K
D
N
L
H
D
V
D
N
H
L
Q
N
V
I
E
D
I
H
D
F
M
Q
G
---------------
G
G
--------
S
---
G
G
--
K
L
Q
E
M
M
K
E
F
Q
Q
V
L
D
E
L
N
N
H
LQGG
K
H
T
V
H
-
H
I
E
Q
N
I
K
E
I
F
H
H
L
E
E
L
V
H
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.67
12%
-146
- C7 -
1G2C
-
?
B:
[480-503]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
V
F
P
S
D
E
F
D
A
S
I
S
Q
V
N
E
K
I
N
Q
---
S
---------------
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
32.14
11%
-97
* C7 *
4ZQW
-
CDII4_ECO5C
B:
[130-165]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-
W
-
S
G
----
N
R
I
N
E
S
D
Y
--------
V
V
L
P
A
---
D
---------------
S
S
--------
P
---
T
E
--
I
G
S
G
L
R
L
A
L
S
R
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
31.77
23%
60
- C7 -
1UJ8
-
ISCX_ECOLI
A:
[4-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
H
H
H
H
H
H
G
S
G
L
-----
K
-
W
T
D
S
----
R
E
I
G
E
A
L
Y
D
A
---------
Y
P
---
D
---------------
L
D
--------
P
---
K
T
VR
F
T
D
M
H
Q
W
I
C
D
L
E
D
F
D
D
D
P
-----
Q
A
S
N
E
-
K
I
L
E
A
I
--
L
L
V
W
L
D
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
28.71
8%
-120
- C7 -
3OST
1
A:
[34-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
K
R
L
Y
E
G
L
H
K
L
L
E
G
-
W
-
K
Q
----
Y
G
L
K
N
L
V
F
N
I
T
N
M
I
I
T
G
K
L
V
N
---
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.43
17%
52
- C7 -
1LXN
1
Y1187_METTH
A:
[10-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
L
G
T
C
S
T
S
L
S
S
Y
V
A
A
A
V
E
A
L
K
K
---
L
N
V
R
Y
E
I
S
GM
G
T
L
L
E
A
E
D
--------
L
---
D
E
--
L
M
E
A
V
K
A
A
H
E
A
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------