@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31890: (2016-07-23 )
MSGEQKSYLENQLEAVAEKTDAGYTFTFQREKIKLLDGLEANVIKDINPFFHKEIDVTDDEVIITIQPPSSYKAFRFMKAKDKKSKWQFAYQLVQAVQQHNLSRLNLIVAPENIVFDKGLTPYFLHYGVKESIPPYERDEERVWQELKAAAALAVDGAFAFEDYLKFNETLTFSAEAKAILDAESYDDLLELIQTHIDELEAKAKTYIHIPRKKWNIQRYIGLGLIVLLVPALIYSMYALFFAQPKHQAIVDSNRAFLNKQYSEVISTLSKYDAESLPESVQYQLATSYVEVENLGSAKTKNIENNLVTLQSDPQHFLYWIDYGRGEYKEAISIGRKLEYNDYIYFALAKYKQQLLSEDTNDEDIQKELDSVNSELEKAQKERQENKQSNSETSLVDTSEEQTQTDEEKQAEEKAAEEKAAAEEKAKKEEQKEKEDEKKETEKKDEKKDDK
Atome Classification :
(20 SA)
.........10.....-...20........30...-.....40........-50--.-.......60........70.......---.80........90........-100........110...-....120.......130.......140.......150.......160.....-..-170.......180.......190.......200........210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350....-..-.360........370.......380.......390.......400.......410.......420.......430.......440.......450
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MSG
E
Q
K
S
Y
L
E
N
Q
L
E
A
V
-
A
EKTDAG
Y
T
F
T
F
QR
E
K
I
K
-
L
LDGL
E
A
N
V
I
K
DI
N
P
-
F
F
--H-KEIDVTD
D
E
V
I
I
T
IQPPSS
Y
K
A
F
R
F
M---KAKDKK
S
K
W
Q
F
A
Y
Q
L
V
Q
A
V
Q
Q-HN-L
S
R
L
N
L
I
VAPE
N
I
V
-FDKGL
T
P
Y
F
L
HYGVKESIPPYE
R
D
E
E
R
V
W
Q
E
L
K
A
A
A
A
LAVD
G
A
F
A
F
E
D
Y
L
K
F-NE-
T
L
T
FSAE
A
K
A
I
LD
A
E
S
Y
D
D
L
L
E
L
I
Q
T
H
I
D
E
L
-
E
A
K
A
K
T
Y
I
H
IPRKKW
N
I
Q
R
Y
I
G
L
G
L
I
V
L
L
V
P
A
L
I
Y
S
M
Y
A
L
F
FAQPK
H
Q
A
I
VDS
N
R
A
F
L
N
K
Q
Y
S
E
V
I
S
T
L
S
KY
D
A
E
SL
P
E
S
V
Q
Y
Q
L
A
T
S
Y
V
E
VENLGSAKTKNIEN
N
L
V
T
LQSDP
Q
H
F
L
Y
W
I
DYGR
G
E
Y
K
E
A
I
SIGRKLEYN
D
Y
I
Y
F
A
L
A
K
Y
K
Q
Q
L
L-SE-DT-
N
D
E
D
I
Q
K
E
L
D
S
V
N
S
E
L
E
K
A
Q
K
E
R
Q
ENKQSNSETSLVDTSEEQTQT
D
E
E
K
Q
A
E
E
K
A
A
E
E
K
A
A
A
E
E
K
A
K
K
E
E
Q
K
E
K
E
D
E
K
K
E
T
EKKDEKKDDK-
1
PsiBlast_PDB
82.28
43%
-121
- C1 -
4ANO
2
?
A:
[5-213]
--
S
E
K
K
T
Y
L
E
T
Q
L
D
A
V
-
M
-
I
N
D
Q
P
Y
T
V
I
F
Q
R
A
K
L
K
-
M
Q
D
P
L
E
L
E
V
L
K
E
V
D
P
-
C
I
--
V
-
R
D
I
D
V
S
E
D
E
V
K
V
V
I
K
P
P
S
S
F
L
T
F
A
A
I
---
R
K
T
T
L
L
S
R
I
R
A
A
I
H
L
V
S
K
V
K
H
-
H
S
-
A
R
R
L
I
F
I
V
C
P
E
N
L
M
-
F
N
R
A
L
E
P
F
F
L
H
V
G
V
K
E
S
L
P
P
D
E
W
D
D
E
R
L
L
R
E
V
K
A
T
V
L
A
L
T
E
G
E
Y
R
F
D
E
Y
L
K
F
-
H
E
-
T
L
K
C
S
P
I
A
K
E
L
W
Q
A
D
H
L
D
A
V
L
A
V
L
E
K
W
V
D
E
E
-
E
A
K
E
R
A
K
V
H
I
P
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
75.41
43%
-7
- C1 -
4ANO
2
?
A:
[5-213]
--
S
E
K
K
T
Y
L
E
T
Q
L
D
A
V
M
I
N
D
Q
P
--
Y
T
V
I
F
Q
R
A
K
L
K
M
Q
-
D
P
L
E
L
E
V
L
K
E
V
D
P
-
C
I
--
V
-
R
D
I
D
V
S
E
D
E
V
K
V
V
I
K
P
P
S
S
F
L
T
F
A
A
I
---
R
K
T
T
L
L
S
R
I
R
A
A
I
H
L
V
S
K
V
K
H
-
H
S
-
A
R
R
L
I
F
I
V
C
P
E
N
L
-
M
F
N
R
A
L
E
P
F
F
L
H
V
G
V
K
E
S
L
P
P
D
E
W
D
D
E
R
L
L
R
E
V
K
A
T
V
L
A
L
T
E
G
E
Y
R
F
D
E
Y
L
K
F
-
H
E
-
T
L
K
C
S
P
I
A
K
E
L
W
Q
A
D
H
L
D
A
V
L
A
V
L
E
K
W
V
D
E
E
-
E
A
K
E
R
A
K
V
H
I
P
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
73.89
40%
-41
- C1 -
4ANO
2
?
A:
[5-213]
--
S
E
K
K
T
Y
L
E
T
Q
L
D
A
--
V
M
I
N
D
Q
P
Y
T
V
I
F
Q
R
A
K
L
K
-
M
Q
D
P
L
E
L
E
V
L
K
E
V
D
P
-
C
I
V
R
D
-
I
D
V
--
S
E
D
E
V
K
V
V
I
K
P
P
S
S
F
L
T
F
A
A
I
---
R
K
T
T
L
L
S
R
I
R
A
A
I
-
H
L
V
S
K
V
K
-
H
H
S
A
R
R
L
I
F
I
V
C
P
E
N
L
M
-
F
N
R
A
L
E
P
F
F
L
H
V
G
V
K
E
S
L
P
P
D
E
W
D
D
E
R
L
L
R
E
V
K
A
T
V
L
A
L
T
E
G
E
Y
R
F
D
E
Y
L
K
F
-
H
E
-
T
L
K
C
S
P
I
A
K
E
L
W
Q
A
D
H
L
D
A
V
L
A
V
L
E
K
W
V
D
E
E
E
A
K
-
E
R
A
K
V
H
I
P
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
69.52
39%
-74
* C1 *
2YNQ
5
?
A:
[6-154]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
I
-
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
G
D
T
-
D
L
-
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
E
S
E
A
Q
L
E
E
------------------------------------------------------------
10
HHSearch
68.53
38%
-74
- C1 -
2YNQ
5
?
A:
[6-154]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
-
I
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
-
G
D
-
T
D
L
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
E
S
E
A
Q
L
E
E
------------------------------------------------------------
2
PsiBlast_PDB
63.67
39%
-75
- C1 -
2YNQ
5
?
A:
[6-146]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
-
I
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
-
G
D
T
D
L
-
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
--------------------------------------------------------------------
8
PsiBlast_CBE
63.51
39%
-83
- C1 -
2YNQ
3
?
C:
[5-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
-
I
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
-
G
D
T
D
L
-
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
--------------------------------------------------------------------
7
PsiBlast_CBE
63.30
39%
-73
- C1 -
2YNQ
4
?
D:
[5-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
-
I
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
-
G
D
T
D
L
-
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
--------------------------------------------------------------------
9
PsiBlast_CBE
62.08
39%
-76
- C1 -
2YNQ
3
?
B:
[5-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
K
Q
E
A
Y
I
Q
S
T
E
L
F
L
Q
N
K
Y
S
D
V
I
T
T
L
E
D
Y
A
P
E
D
M
P
Y
V
I
Q
Y
E
L
A
S
S
Y
V
M
T
E
S
L
T
E
E
Q
R
Q
T
V
S
N
N
-
I
T
L
K
T
D
E
Q
Y
M
L
Y
W
I
Y
I
G
R
S
Q
S
E
E
A
L
E
L
A
R
T
I
E
D
R
D
L
I
V
Y
A
L
L
K
Y
R
E
Q
I
K
-
G
D
T
D
L
-
S
G
D
E
K
Q
K
K
L
D
E
I
D
Q
E
I
K
E
Y
E
R
E
R
K
--------------------------------------------------------------------
35
Fugue
43.14
15%
-12
- C- -
4ANN
-
?
A:
[30-205]
-----------------------
L
D
M
R
E
I
P
K
S
S
I
K
-
P
E
H
F
H
L
M
Y
L
L
E
Q
H
S
P
Y
F
I
--
D
-
A
E
L
T
E
L
R
D
S
F
Q
I
H
Y
D
I
N
D
N
H
T
P
F
D
N
I
---
K
S
F
T
K
N
E
K
L
R
Y
L
L
N
I
K
N
L
E
E
V
-
N
R
--
T
R
Y
T
F
V
L
A
P
D
E
L
F
-
F
T
R
D
G
L
P
I
A
K
T
R
G
L
Q
N
V
V
D
P
L
P
V
S
E
A
E
F
L
T
R
Y
K
A
L
V
I
C
A
F
N
E
K
Q
S
F
D
A
L
V
E
G
N
L
E
-
L
H
K
G
T
P
F
E
T
K
V
I
E
A
A
T
L
D
L
L
T
A
F
L
D
E
Q
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
42.96
15%
-2
- C- -
4ANN
-
?
A:
[30-205]
-----------------------
L
D
M
R
E
I
P
K
S
S
I
K
-
P
E
H
F
H
L
M
Y
L
L
E
Q
H
S
P
-
Y
F
I-
D
-
A
E
L
T
E
L
R
D
S
F
Q
I
H
Y
D
I
N
D
N
H
T
P
F
D
N
I
---
K
S
F
T
K
N
E
K
L
R
Y
L
L
-
N
I
K
N
L
E
E
-
V
N
-
R
T
R
Y
T
F
V
L
A
P
D
E
L
F
-
F
T
R
D
G
L
P
I
A
K
T
R
G
L
Q
N
V
V
D
P
L
P
V
S
E
A
E
F
L
T
R
Y
K
A
L
V
I
C
A
F
N
E
K
Q
S
F
D
A
L
V
E
G
-
N
L
E
L
H
K
G
T
P
F
E
T
K
V
I
E
A
A
T
L
D
L
L
T
A
F
L
D
E
Q
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
39.83
17%
38
- C1 -
4RFX
-
DCTN1_CHICK
A:
[432-531]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
T
L
T
-
E
R
-
N
L
-
D
L
E
E
K
V
R
E
L
R
E
T
V
G
D
L
E
A
M
N
E
M
N
D
E
L
Q
E
N
A
R
E
T
E
L
-
E
L
R
E
Q
L
D
L
A
A
A
R
V
R
E
A
E
K
R
V
E
A
A
Q
E
T
V
A
D
Y
Q
Q
T
I
K
K
Y
R
E
L
T
A
H
L
Q
D
V
N
R
E
L
M
S
Q
Q
-
39
Fugue
38.48
14%
65
- C1 -
1X79
3
RABE1_HUMAN
B:
[3-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
-
R
D
-
Q
V
K
K
L
Q
L
M
L
R
Q
A
N
D
Q
L
E
K
T
M
K
D
K
Q
E
L
E
D
F
I
K
Q
S
S
E
D
S
S
H
Q
I
S
A
L
V
L
R
A
Q
A
S
E
I
L
L
E
E
L
Q
Q
G
L
S
Q
A
K
R
D
V
Q
E
Q
M
A
V
L
M
Q
S
R
E
Q
V
S
E
E
------
29
HHSearch
35.33
16%
-9
- C1 -
4RED
-
AAPK1_HUMAN
A:
[74-180]
------------------------------------------------
R
H
P
-
H
I
I-
K
L
Y
Q
V
I
S
T
P
S
D
I
F
M
V
M
E
Y
V
S
G
G
E
L
F
D
Y
I
C
K
N
G
R
L
D
E
K
E
S
R
R
L
F
Q
Q
I
L
S
G
V
D
Y
C
H
R
-
H
M
V
V
H
R
D
L
K
P
E
N
V
L
-
L
D
A
H
M
N
A
K
I
A
D
F
G
L
S
N
M
M
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
35.05
14%
102
- C1 -
1SFC
1
?
C:
[7-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
N
E
L
E
E
M
Q
R
R
A
D
Q
L
A
D
E
S
L
E
S
T
R
R
M
L
Q
L
V
E
E
S
K
D
A
G
I
R
T
L
V
M
L
D
E
Q
G
E
Q
L
D
R
V
E
E
G
M
N
H
I
N
Q
D
M
K
E
A
E
K
N
L
K
D
L
G
K
-------
27
HHSearch
32.34
15%
1
- C1 -
1FOT
-
KAPA_YEAST
A:
[143-251]
------------------------------------------------
T
H
P
-
F
I
I
-
R
M
W
G
T
F
Q
D
A
Q
Q
I
F
M
I
M
D
Y
I
E
G
G
E
L
F
S
L
L
R
K
S
Q
R
F
P
N
P
V
A
K
F
Y
A
A
E
V
C
L
A
L
E
Y
L
H
S
-
K
D
I
I
Y
R
D
L
K
P
E
N
I
L
-
L
D
K
N
G
H
I
K
I
T
D
F
G
F
A
K
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
32.32
25%
83
- C1 -
2K6I
-
Y223_METJA
A:
[1-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
S
V
M
E
A
I
K
E
V
K
L
A
E
E
Q
A
V
K
E
I
E
E
A
K
N
R
A
E
Q
I
K
A
E
A
I
E
E
A
K
K
L
I
A
C
---------
40
Fugue
32.23
20%
127
- C1 -
2KZ9
-
VATE_YEAST
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
S
A
I
T
A
L
T
P
N
Q
V
N
D
E
L
N
K
M
Q
A
F
I
R
K
E
A
E
E
K
A
K
E
I
Q
L
K
A
D
Q
E
Y
E
I
E
K
T
N
I
V
R
N
E
T
N
N
I
D
G
N
F
K
S
K
L
K
K
A
19
HHSearch
32.09
14%
-250
- C1 -
1QLE
4
COX4_PARDE
D:
[22-42]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
A
T
W
V
S
I
L
S
I
A
V
L
V
F
L
A
L
A
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
31.70
13%
4
- C1 -
3A8X
-
KPCI_HUMAN
A:
[68-165]
------------------------------------------------
N
H
P
-
F
L
V
-
G
L
H
S
C
F
Q
T
E
S
R
L
F
F
V
I
E
Y
V
N
G
G
D
L
M
F
H
M
Q
R
Q
R
K
L
P
E
E
H
A
R
F
Y
S
A
E
I
S
L
A
L
N
Y
L
H
E
-
R
G
I
I
Y
R
D
L
K
L
D
N
V
L
-
L
D
S
E
G
H
I
K
L
T
D
Y
G
M
C
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------