@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31959: (2016-07-23 )
MANPFENADGTYLVLVNEEGQYSLWPGFIDVPSGWTVVHEQKGREACLDYIQSHWSDMRPNSLKTVENV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....---....10........20-.....-----------..-------..30....---.....40-.........50.-.......60........----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANPF---ENADG
T
Y
L
V
L
VNEEG--
Q
Y
SLW-----------P
G
-------
F
I
D-VPS
G
---
W
T
V
V
HE--QK
G
R
E
A
C
L
D
Y
I
Q
-
S
H
W
SDMRPNSLKTVENV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
83.88
51%
0
- C- -
4GR5
2
?
B:
[4-73]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
N
P
F
---
E
E
Y
D
G
G
H
V
V
L
T
D
A
L
G
--
R
H
S
L
W
-----------
P
A
-------
G
I
A
-
V
P
A
G
---
W
S
V
R
H
G
--
T
D
S
R
E
G
C
L
A
H
I
E
-
H
H
W
T
D
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
79.96
51%
-130
- C5 -
4GR4
-
?
A:
[4-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
N
P
F
---
E
E
Y
D
G
G
H
V
V
L
T
D
A
L
G
--
R
H
S
L
W
-----------
P
A
-------
G
I
A
-
V
P
A
G
---
W
S
V
R
H
G
--
T
D
S
R
E
G
C
L
A
H
I
E
-
H
H
W
T
D
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
79.26
50%
-146
- C5 -
2KHR
-
MBTH_MYCTU
A:
[5-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
N
P
F
---
D
D
D
N
G
A
F
F
V
L
V
N
D
E
D
--
Q
H
S
L
W
-----------
P
V
-------
F
A
D
-
I
P
A
G
---
W
R
V
V
H
G
--
E
A
S
R
A
A
C
L
D
Y
V
E
-
K
N
W
T
D
L
R
P
K
S
L
R
D
A
M
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.69
54%
-149
- C5 -
2KHR
-
MBTH_MYCTU
A:
[7-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
F
---
D
D
D
N
G
A
F
F
V
L
V
N
D
E
D
--
Q
H
S
L
W
-----------
P
V
-------
F
A
D
-
I
P
A
G
---
W
R
V
V
H
G
--
E
A
S
R
A
A
C
L
D
Y
V
E
-
K
N
W
T
D
L
R
P
K
S
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
78.03
47%
-144
- C5 -
2MYY
-
?
A:
[9-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
N
P
F
---
D
D
E
D
G
M
F
F
V
L
I
N
D
E
E
--
Q
H
S
L
W
-----------
P
T
-------
F
A
D
-
V
P
A
G
---
W
R
V
V
F
G
--
E
A
S
R
A
S
C
V
E
Y
V
D
-
Q
H
W
T
D
I
R
P
K
S
L
R
E
K
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
77.45
51%
-116
- C5 -
4GR5
1
?
A:
[5-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
P
F
---
E
E
Y
D
G
G
H
V
V
L
T
D
A
L
G
--
R
H
S
L
W
-----------
P
A
-------
G
I
A
-
V
P
A
G
---
W
S
V
R
H
G
--
T
D
S
R
E
G
C
L
A
H
I
E
-
H
H
W
T
D
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
77.01
51%
-146
- C5 -
2MYY
-
?
A:
[11-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
F
---
D
D
E
D
G
M
F
F
V
L
I
N
D
E
E
--
Q
H
S
L
W
-----------
P
T
-------
F
A
D
-
V
P
A
G
---
W
R
V
V
F
G
--
E
A
S
R
A
S
C
V
E
Y
V
D
-
Q
H
W
T
D
I
R
P
K
S
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
76.31
51%
-131
- C5 -
4GR5
1
?
C:
[5-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
P
F
---
E
E
Y
D
G
G
H
V
V
L
T
D
A
L
G
--
R
H
S
L
W
-----------
P
A
-------
G
I
A
-
V
P
A
G
---
W
S
V
R
H
G
--
T
D
S
R
E
G
C
L
A
H
I
E
-
H
H
W
T
D
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.15
58%
-117
- C5 -
2N6G
-
?
A:
[8-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
F
---
D
D
D
N
G
S
F
F
V
L
V
N
D
E
E
--
Q
H
S
L
W
-----------
P
A
-------
F
A
D
-
V
P
A
G
---
W
R
V
V
H
G
--
E
A
D
R
A
A
C
L
E
Y
I
E
-
E
H
W
P
D
I
R
P
K
S
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
75.52
51%
-129
- C5 -
4GR5
2
?
D:
[6-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
F
---
E
E
Y
D
G
G
H
V
V
L
T
D
A
L
G
--
R
H
S
L
W
-----------
P
A
-------
G
I
A
-
V
P
A
G
---
W
S
V
R
H
G
--
T
D
S
R
E
G
C
L
A
H
I
E
-
H
H
W
T
D
L
R
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
68.13
40%
-90
- C5 -
2GPF
-
?
A:
[1-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
S
V
F
---
D
R
D
D
I
Q
F
Q
V
V
V
N
H
E
E
--
Q
Y
S
I
W
-----------
P
E
-------
Y
K
E
-
I
P
Q
G
---
W
R
A
A
G
K
--
S
G
L
K
K
D
C
L
A
Y
I
E
-
E
V
W
T
D
M
R
P
L
S
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
68.08
37%
-79
- C5 -
2GPF
-
?
A:
[1-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
S
V
F
---
D
R
D
D
I
Q
F
Q
V
V
V
N
H
E
E
--
Q
Y
S
I
W
-----------
P
E
-------
Y
K
E
-
I
P
Q
G
---
W
R
A
A
G
K
--
S
G
L
K
K
D
C
L
A
Y
I
E
-
E
V
W
T
D
M
R
P
L
S
L
R
Q
H
M
D
K
AAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
65.34
37%
-73
- C5 -
2LPD
-
?
A:
[16-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
G
P
G
---
S
M
D
D
E
L
Y
F
V
V
R
N
N
E
G
--
Q
Y
S
V
W
-----------
M
D
-------
G
R
S
-
L
P
A
G
---
W
E
T
V
G
E
--
P
A
T
K
Q
Q
C
L
Q
R
I
E
-
Q
L
W
T
D
M
V
P
A
S
V
R
E
H
L
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
64.62
38%
-93
- C5 -
2LPD
-
?
A:
[18-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
G
---
S
M
D
D
E
L
Y
F
V
V
R
N
N
E
G
--
Q
Y
S
V
W
-----------
M
D
-------
G
R
S
-
L
P
A
G
---
W
E
T
V
G
E
--
P
A
T
K
Q
Q
C
L
Q
R
I
E
-
Q
L
W
T
D
M
V
P
A
S
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
60.36
40%
-97
- C- -
2PST
-
?
X:
[8-64]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
--
Q
Y
S
I
W
-----------
P
E
-------
Y
K
E
-
I
P
Q
G
---
W
R
A
A
G
K
--
S
G
L
K
K
D
C
L
A
Y
I
E
-
E
V
W
T
D
M
R
P
L
S
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
60.04
39%
-87
- C- -
2PST
-
?
X:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
--
Q
Y
S
I
W
-----------
P
E
-------
Y
K
E
-
I
P
Q
G
---
W
R
A
A
G
K
--
S
G
L
K
K
D
C
L
A
Y
I
E
-
E
V
W
T
D
M
R
P
L
S
L
R
Q
H
M
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
59.63
38%
-87
- C- -
2PST
-
?
X:
[8-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Q
F
Q
V
V
V
N
H
E
E
--
Q
Y
S
I
W
-----------
P
E
-------
Y
K
E
-
I
P
Q
G
---
W
R
A
A
G
K
--
S
G
L
K
K
D
C
L
A
Y
I
E
-
E
V
W
T
D
M
R
P
L
S
L
R
Q
H
M
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
52.02
22%
-57
- C5 -
1E68
-
?
A:
[1-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
GIP
A
A
V
A
G
T
V
L
N
V
V
E
A
G
G
--
W
V
T
T
I
-----------
V
S
-------
I
L
T
A
V
G
S
G
---
G
L
S
L
L
A
--
A
A
G
R
E
S
I
K
A
Y
L
K
-
K
E
I
K
K
K
G
K
R
A
V
I
A
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
48.77
24%
-7
- C5 -
3V97
6
RLMKL_ECOLI
A:
[1-703]
A
M
N
S
L
F
A
S
T
A
RGL
E
E
L
L
K
T
E
L
E
N
L
GAVE
C
Q
V
V
QG
G
V
H
F
K
G
D
T
R
L
V
Y
Q
S
L
M
W
SRLAS
R
I
M
L
P
L
G
E
C
K
V
YS
D
L
D
L
Y
L
G
V
Q
AINWTEMFNPG
A
T
F
A
V
H
F
S
G
L
N
DTIRN
S
Q
Y
G
A
M
K
V
K
D
A
I
V
D
A
F
T
R
K
NLP
R
P
N
V
D
RDAPD
I
R
V
N
V
W
L
H
KE
T
A
S
I
A
L
D
LSGDGLHLRGYRDRAGIAPIK
E
T
L
A
A
A
I
V
M
R
SGWQPG
T
P
L
L
D
PMCGSG
T
L
L
I
E
A
A
M
L
A
T
DRAPGLHRGRWGFSGWAQHD
E
A
I
W
Q
E
V
K
A
E
A
Q
T
R
A
R
K
G
L
A
E
YS
S
H
F
Y
G
S
D
SD
A
R
V
I
Q
R
A
R
T
N
A
R
L
A
GIGEL
I
T
F
E
VKDVAQLTNPLPKGP
Y
G
T
V
L
S
N
P
P
Y
GESE
P
A
L
I
A
L
H
S
L
L
G
R
I
M
K
N
QFGG
W
N
L
S
L
F
S
AS
P
D
L
L
S
C
L
QLRAD
K
Q
Y
K
A
K
NGP
L
D
C
V
Q
K
N
Y
H
V
A
E
SMVA
E
D
Y
T
N
R
L
---
R
K
N
L
K
K
F
E
K
W
A
R
Q
E
G
IE
C
Y
R
L
Y
-----------
D
A
DLPEYN
V
A
V
D
-
R
Y
A
D
---
W
V
V
V
Q
E
Y
A
H
K
A
R
Q
R
L
F
D
I
I
A
-
A
T
I
S
V
L
G
I
A
P
N
K
L
V
L
K
T
REE
K
G
E
F
L
E
V
T
E
YN
A
H
L
W
V
N
LTDYLDTGLFLDH
R
I
A
R
R
M
L
G
Q
M
SKGKD
F
L
N
L
FSYTG
S
A
T
V
H
A
G
L
G
GAR
S
T
T
T
V
D
MS
R
T
Y
L
E
W
A
E
R
N
L
R
L
N
GLTGRA
H
R
L
I
Q
A
D
C
L
A
W
L
R
E
ANEQFD
L
I
F
I
D
P
P
TFSAFDVQRD
H
L
A
L
M
K
D
L
K
R
L
LRAG
G
T
I
M
F
S
N
NKRGFRMD
L
D
G
L
A
K
L
G
L
K
A
Q
E
ITQKTLSQDFARNRQIH
N
C
W
L
I
T
AA
35
Fugue
42.49
24%
-7
- C5 -
1GH5
-
?
A:
[1-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
N
R
T
---
D
C
N
E
N
S
Y
L
E
I
H
N
N
E
G
--
R
D
T
L
C
F
A
N
A
G
T
M
P
V
A
I
Y
G
-------
V
N
W
-
V
E
S
G
N
N
V
V
T
L
Q
F
Q
--
R
N
L
S
D
P
R
L
E
T
I
T
L
Q
K
W
G
S
W
N
P
G
H
I
H
E
I
L
S
I
R
I
Y-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------