@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu33870: (2016-07-27 )
MYCPQCGHQTDGGNFCEKCGSPLPGQSGHQHAAQTGAAAKQAAKQFGSFVLSVLKRPYQECKATGGEQLISAIITMVLFSLLTPLMFYILFSDGPGSVSFTAIFLEPTIYFILFLFGLHACIFFALKIAGNQVSFKDSFSRFGAFLIPFTAILILALFFFLLHTDICFTILAVGLIGAFFAIPPAMLSSYQHSYKGKVDFIYSTIVIYLIICVTFQLIIEHYVKEIFRYMLF
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------......-...-10-----.-----------.------.......20--..-......30......-..40.-.......50---...-.....60....-...------------.70........80---------.......-------------------------------..90........100..------.----------------------------....110.......120.......130.......140-------------......--------------..150.......--160.......170.......180----.......190-...----...---.200.....--..210-----........220.......230------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------MYCPQC-GHQ-T------D-----------
G
------
G
N
F
C
E
KCGS--PL-PGQSGH
Q
H
A
A
QT
G
A
-
A
A
K
Q
A
-
A
K
Q
F
G
S
F
V
L
---
S
V
L
-
K
R
P
Y
Q
E
C
KAT
G
-
G
E
Q
------------
L
I
S
A
I
I
T
M
V
L
F
S
----------
L
L
T
P
L
M
F
-------------------------------
Y
I
L
FSDGPG
S
V
S
F
T
A
I
F------L----------------------------E
P
T
I
Y
F
I
L
F
L
F
G
L
H
A
C
I
F
F
A
L
K
IAGNQV
S
F
K
D
S
F
S
R
--------------
F
G
A
F
L
I
--------------
P
F
T
A
I
L
I
L
A
L
F
F
--
F
L
LH
T
D
I
C
F
T
I
L
A
V
G
L
I
G
A
F
F
AI----
P
P
A
M
L
S
S
Y
Q
H
-SYK----GK
V
---
D
F
I
Y
S
T
I
V
I
--
Y
L
I
I
------
C
V
T
F
Q
L
I
I
E
H
Y
V
K
E
I
F
R
Y
MLF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
65.34
11%
-36
- C6 -
3BJD
2
?
A:
[4-329]
----------------------------------------------------------------------------------------------------------------------------------------NTRN
F
S
L
P
Q
L
Q
N
L
P
-
I
------
E
-----------
E
------
A
R
I
V
A
D
A
L
A
--
V
H
-
A
T
S
R
Q
I
D
S
A
A
S
K
L
A
-
A
L
A
E
A
-
G
L
K
G
D
R
Q
A
Y
---
A
A
Y
-
Q
Q
L
L
Y
V
L
S
L
S
D
-
D
V
A
------------
T
A
Q
T
R
R
W
L
A
R
A
I
----------
Y
R
V
E
E
R
F
MPAADLSRALS
E
E
D
F
Q
K
R
L
E
Q
E
I
AAQERH
P
M
S
Q
Y
V
F
S
G
S
A
S
R
A
Q
L
Q
V
F
------
L
----------------------------
R
H
Q
W
F
R
T
F
R
L
Y
R
D
A
A
D
L
L
V
N
L
T
D
V
D
E
A
A
A
L
A
R
Y
L
Y
G
E
L
GEEDEKGS
H
P
R
L
L
A
K
L
L
E
A
I
G
L
E
A
D
FQAVSTM
P
E
E
I
A
Y
L
N
N
R
A
R
--
A
F
R
H
A
E
---
V
G
W
G
L
A
V
F
Y
I
T
E
L
V
----
V
P
G
N
H
E
K
L
Y
R
-
A
L
L
Q
A
GL
S
E
D
---
Q
A
E
Y
Y
K
V
H
I
--
S
L
V
P
------
K
R
E
W
Q
L
I
A
R
R
I
P
D
V
Q
F
Q
N
A
F
L
T
S
L
S
Q
H
F
R
V
E
R
A
Y
Y
D
A
I
W
E
E
M
Q
S
V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
60.57
15%
-57
- C2 -
2F9I
1
ACCD_STAAC
B:
[26-285]
---------------------------------------------------------------------------------------------------------------------------------------PAGI
M
T
K
C
P
K
C
-
K
K
I
-
M
Y
T
K
E
L
A
E
-----------
N
------
L
N
V
C
F
N
C
D
H
HI
A
L
-
T
A
Y
K
R
I
E
A
I
S
D
E
G
S
-
F
T
E
F
D
-
K
G
M
T
S
A
N
P
L
DFP
S
Y
L
-
E
K
I
E
K
D
Q
Q
K
T
G
L
K
E
A
------------
V
V
T
G
T
A
Q
L
D
G
M
K
----------
F
G
V
A
V
M
D
-------------------------------
S
R
F
R
M
G
S
M
G
S
V
I
G
E
K
I
C
R
I
I
D
Y
C
T
----------------------------
E
N
R
L
P
F
I
L
F
S
A
S
G
G
A
R
M
Q
E
G
I
I
S
L
M
Q
M
G
K
T
S
V
S
L
K
R
--------------
H
S
D
A
G
L
--------------
L
Y
I
S
Y
L
T
H
P
T
T
G
--
G
V
S
A
S
F
A
S
V
G
D
I
N
L
S
E
P
K
A
L
I
G
F
----
A
G
R
R
V
I
E
Q
T
I
-
N
E
K
----
L
P
D
---
D
F
Q
T
A
E
F
L
L
E
H
G
Q
L
D
------
K
V
V
H
R
N
D
M
R
Q
T
L
S
E
I
L
K
I
H
Q
E
VTK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
53.98
11%
-48
* C6 *
1RQG
2
SYM_PYRAB
A:
[1-606]
MVRYMVTSALPYAN
G
P
I
H
A
G
H
L
A
G
AY
L
P
A
D
I
F
V
R
Y
L
R
L
K
G
E
D
V
V
F
I
C
G
T
DEHG
T
P
I
S
F
R
A
L
K
E
GRS
P
R
E
I
V
D
E
F
H
E
Q
I
K
I
T
F
Q
R
A
KISFD
F
F
G
R
TEL
P
I
H
Y
K
L
S
Q
E
F
F
L
K
A
Y
E
N
GH
L
V
K
K
V
T
K
Q
A
Y
C
EHDK
M
F
L
P
DRF
V
I
G
T
C
P
Y
C
-
G
A
E
-
D
------
Q
-----------
K
------
G
D
Q
C
E
V
C
G
R
--
P
L
T
P
E
I
L
I
N
P
R
C
A
I
C
G
R
-
P
I
S
F
R
-
D
S
A
H
Y
Y
I
K
M
---
Q
D
F
-
A
E
R
L
K
R
W
I
E
K
Q
-
P
W
K
--------------
P
N
V
K
N
M
V
L
S
W
----------
I
E
E
G
L
E
E
-------------------------------
R
A
I
T
R
D
L
N
W
G
I
P
V
P
L
D
E
------
E
----------------------------
D
M
K
G
K
V
L
Y
V
W
F
E
A
P
I
G
Y
I
S
I
T
I
E
H
F
K
R
I
G
K
P
N
E
W
K
K
--------------
Y
W
L
N
I
D
--------------
G
Q
T
R
V
I
H
F
I
G
K
D
--
N
I
P
F
H
A
I
F
W
P
A
F
L
M
A
Y
G
K
Y
K
D
E
E
----
V
E
A
E
W
N
L
P
Y
D
I
P
A
N
----
E
Y
L
---
T
L
E
G
K
K
F
S
T
--
S
R
N
W
------
A
I
W
V
H
E
F
L
D
V
F
P
A
D
Y
L
R
Y
Y
L
T
T
I
MPET
R
D
S
D
F
S
F
S
D
F
K
V
R
I
N
E
ELVNN
L
G
N
F
V
H
R
A
L
T
F
V
N
R
YFDG
V
V
P
E
R
G
E
LD
E
L
D
R
E
A
L
E
E
I
E
K
A
F
K
E
V
G
E
L
I
M
N
YR
F
K
D
A
L
K
R
V
M
S
L
A
S
F
G
N
R
Y
F
D
H
K
Q
P
W
K
T
A
K
ED
K
V
R
T
G
T
T
V
N
I
S
L
Q
I
V
K
A
L
G
I
L
L
E
PFL
P
D
A
S
E
K
I
W
H
L
L
NLDEVKRW
E
F
R
E
LPAG
H
K
V
R
K
PEILFKKVT
D
D
Q
I
I
Y
F
I
L
N
YMAKGN
P
E
G
A
R
I
L
L
D
K
Y
Y
K
R
E
D
V
I
R
V
A
K
E
K
FGDEAEVV
L
R
R
V
Y
KDIK
11
PsiBlast_PDB
51.71
27%
0
- C- -
4BOT
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.71
27%
0
- C- -
4BOR
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
51.71
27%
0
- C- -
4BOO
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.71
27%
0
- C- -
4BON
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
51.71
27%
0
- C- -
4BOI
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
51.71
27%
0
- C- -
4BOG
-
ACHA_TORMA
2:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.71
27%
0
- C- -
4AQ9
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.71
27%
0
- C- -
4AQ5
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.71
27%
0
- C- -
2BG9
-
ACHA_TORMA
A:
[215-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
V
I
I
P
C
L
L
F
S
----------
F
L
T
V
L
V
F
-------------------------------
Y
L
P
T
D
S
G
E
K
M
T
L
S
I
S
V
L
------
L
----------------------------
S
L
T
V
F
L
L
V
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.42
36%
-38
- C6 -
3TQH
1
?
A:
[159-216]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
G
A
G
G
V
G
H
-
L
A
I
Q
L
-
A
K
Q
K
G
T
T
V
I
---
T
T
A
S
K
R
N
H
A
F
L
K
A
L
G
-
A
E
Q
------------
C
I
N
Y
H
E
E
D
F
L
L
A
----------
I
S
T
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.57
31%
-45
- C7 -
3WWL
1
LYSW_THET8
A:
[3-38]
--------------------------------------------------------------------------------------------------------------------------------------------
G
T
C
P
E
C
-
G
A
E
L
R
------
L
-----------
E
N
P
E
L
G
E
L
V
V
C
E
D
C
G
A
--
E
L
-
E
V
V
G
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
42.31
26%
-49
- C8 -
3H0G
-
RPAB4_SCHPO
L:
[23-53]
---------------------------------------------------------------------------------------------------------------------------------------------
L
C
A
D
C
-
G
A
R
N
T
------
I
QAK--------
E
------
V
I
R
C
R
E
C
G
H
--
R
V
-
M
Y
K
M
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
41.46
28%
-110
- C7 -
2JNE
2
YFGJ_ECOLI
A:
[50-74]
---------------------------------------------------------------------------------------------------------------------------------------------
R
C
R
S
C
-
G
E
F
-
I
------
E
-----------
M
------
K
A
L
C
P
D
C
H
Q
--
P
L
-
Q
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
41.01
11%
-74
- C6 -
2BI0
1
?
A:
[8-337]
--------------------------------------------------------------------------------------------------------------------------IRVGGPYFDDLSKGQVFD
W
A
P
G
V
T
-
L
S
L
-
G
------
L
-----------
A
------
A
A
H
Q
S
I
V
G
N
--
R
L
-
R
L
A
L
D
S
D
L
C
A
A
V
T
G
M
P
G
P
L
A
H
P
G
L
V
C
D
V
A
I
---
G
Q
S
-
T
L
A
T
Q
R
V
K
A
N
L
-
F
Y
R
GLRFH
R
F
P
A
VG
D
T
L
Y
T
R
T
E
V
V
G
L
R
A
N
S
PKPGR
A
P
T
G
L
A
G
L
R
M
------------------------------
T
T
I
D
R
T
D
R
L
V
L
D
F
Y
R
C
A
M
-----
L
P
A
S
PDWKPGAVPGDDLSRIGADAPAPAA
D
P
T
A
H
W
D
G
A
V
F
R
K
R
V
P
G
P
H
F
D
A
G
I
A
G
A
V
L
H
S
T
A
D
L
V
--------------
S
G
A
P
E
L
--------------
A
R
L
T
L
N
I
A
A
T
H
H
DW
R
V
S
G
R
R
L
V
Y
G
G
H
T
I
G
L
A
L
A
Q
A
T
R
L
L
PN
L
A
T
V
L
D
W
E
S
C
-
D
H
T
----
A
P
V
H
EG
D
T
L
Y
S
E
L
H
I
--
E
S
A
Q
A
H
AD
G
G
V
L
G
L
R
S
L
V
Y
A
V
S
D
S
A
S
E
P
D
R
Q
V
L
D
W
R
F
S
A
L
Q
F-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
40.89
19%
-23
- C7 -
1TWF
1
RPAB4_YEAST
L:
[30-60]
---------------------------------------------------------------------------------------------------------------------------------------------
I
C
A
E
C
-
S
S
K
L
S
------
L
-----------
S
RTD---
A
V
R
C
K
D
C
G
H
--
R
I
-
L
L
K
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
40.67
28%
24
- C7 -
1VD4
1
A:
[16-56]
---------------------------------------------------------------------------------------------------------------------------------------------
K
C
P
V
C
-
S
S
T
F
T
------
D
L
E
A
N
Q
L
FDPMT
G
------
T
F
R
C
T
F
C
H
T
--
E
V
-
E
E
D
E
S
A
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
39.70
28%
-32
- C7 -
2CON
1
A:
[16-42]
--------------------------------------------------------------------------------------------------------------------------------------------
L
R
C
H
G
C
-
F
K
T
T
S
------
D
-----------
M
N-----
R
V
F
C
G
H
C
G
N
--
K
T
-
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------