@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu34310: (2016-07-27 )
MIVYAVNMGIVFIWSWFAKMCGGRDDSLATGYRPNKLLIWIPLASLVLVSGLRYRVGTDFQTYTLLYELAGDYQNVWQIFGFGTAKTATDPGFTALLWLMNFITEDPQIMYFTVAVVTYSFIMKTLADYGRPFELSVFLFLGTFHYYASFNGIRQYMVAAVLFWAIRYIISGNWKRYFLIVLVSSLFHSSALIMIPVYFIVRRKAWSPAIFGLSALFLGMTFLYQKFISVFVVVLENSSYSHYEKWLMTNTNGMNVIKIAVLVLPLFLAFCYKERLRSLWPQIDIVVNLCLLGFLFGLLATKDVIFARFNIYFGLYQMILVPYFVRIFDEKSNALIYIAIVVCYFLYSYLLMPVDSSVLPYRTIFSR
Atome Classification :
(17 SA)
-----------------------------------------------------------------.........10..-----.----.....20........30..-......40----..-.......50---...-..--....60.........70--.........80...---------.....90....-....100-.-....-.---.110--........--120.......130.--......------.140..-.....150-.---.-......160.--......170-.---.-----.---.---..-----...180.......190.......200......--...210--------.......220....-------------...230.......240......------.250...--....260.......270-------------...-....-.280.......290....--...300.-----......310.......320.......330.-......340----------------.--...---....----.350------------.......--------------360.--.....------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------
M
I
V
Y
A
V
N
M
G
I
V
F
I
-----
W
----
S
W
F
A
K
MCGGRDDSLATGYR-P
N
K
L
L
I
W
-----IP-
L
A
S
L
V
L
V
S----GL
R
-
Y
R--VGTDF-
Q
T
Y
T
L
L
Y
E
L
A
---
G
D
Y
Q
N
V
W
Q
I
FGFGT---------AKTATD
P
G
F
T
A
-
L
L
W
L
M
N
F
-I-TEDP-
Q
---
I
M
Y
---
F
T
V
A
V
V
T
Y
--
S
F
I
M
K
T
L
A
DYGR-
P
--
F
E
L
S
V
F
------
L
F
L
G
T
F
-
H
Y
Y
A
S
F
-
N
-
G
---
I
-
R
Q
Y
M
V
A
A
V
L
F
--
W
A
I
R
Y
I
I---S---G-----N---W---
K
R
-----
Y
F
L
I
V
L
V
S
S
L
FHSS
A
L
I
M
I
P
V
Y
F
I
--
V
RRKAW--
S
P
A
I
F
G
--------
L
S
A
L
F
L
G
M
T
F
L
Y
Q
K
-------------
F
I
S
V
F
V
V
VLENS
S
Y
S
H
Y
E
K
W
LM------TNTNG
M
N
--
V
I
K
I
A
V
L
V
L
P
L
F
L
A
F
-
C
-------------
Y
K
E
-
R
L
R
S
-LWP
Q
I
D
I
V
V
N
L
C
L
L
G
F
L
F
--
G
L
L
ATKD-----
V
I
F
A
R
F
N
I
Y
F
G
L
Y
Q
M
I
L
V
P
Y
F
V
R
I
FDEKS
N
-
A
L
I
Y
I
A
I
------------------
V
--
V
C
Y
---
F
L
Y
S
----
Y
L
LM------------PVDSSVL--------------
P
-
Y
R
--
T
IFSR------------------------------------------------
17
Fugue
69.96
15%
-85
- C6 -
4N5H
5
?
X:
[1-315]
--------------------------------------------------------------------
M
A
D
E
E
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M
L
A
K
-----
V
----
Q
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D
K
A
R
Y
A
D
E
R
-
V
P
E
D
V
H
W
-----
E
T
-------------
E
Y
R
-
Y
E
--
Q
S
A
D
P
Q
Q
T
L
N
L
Y
Y
P
A
K
RRN
A
T
M
P
T
V
I
D
I
H
G
G
G
----------------------------
W
-
F
-
Y
G
D
R
-
N
---
L
------------
N
--
R
N
Y
C
R
Y
L
A
S
Q
G
--------
Y
A
V
------
M
G
M
G
-----
Y
R
L
L
-
P
-
D
---
V
-
D
L
R
G
Q
I
Q
D
I
F
--
A
S
L
R
W
L
S
---
H
---
F
-----
G
---
P
---
Q
R
-----
G
F
D
L
D
H
V
L
L
T
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C
--
I
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Q
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A
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--
L
Q
E
L
F
G
--------
V
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R
V
N
F
N
F
T
------------------
L
V
A
L
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C
P
V
A
E
P
S
K
L
P
E
A
A
G
---------------
D
--
M
S
D
M
A
A
F
Y
L
D
K
L
S
G
----------------
G
D
Q
-
A
L
V
D
-
H
L
N
F
S
Q
V
V
K
G
L
D
L
P
P
F
M
L
IG
G
---
Q
N
D
-----
S
F
Y
L
Q
S
Q
A
L
L
K
V
F
D
A
N
H
V
T
Y
T
T
K
L
W
P
A
S
A
G
-
P
H
L
K
H
V
F
------------------
N
--
V
Q
H
---
W
E
W
P
----
E
S
I
E
------------
T
N
L
E
M
L
R
--------------
T
-
F
D
--
A
L
S
K
Q
QDQAEENE----------------------------------------
14
Fugue
67.68
11%
-162
- C6 -
4J7C
1
KTRB_BACSU
I:
[35-465]
----------------------------------------------------TPPQVLAIGFFLT
I
I
I
G
A
V
L
L
M
L
P
I
S
-----
T
TKPL
S
W
I
D
A
L
F
T
A
A
S
A
T
T
V
T
G
L
A
-
V
V
D
T
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T
Q
-----
F
T
-
V
F
G
Q
T
V
I
M
----
G
L
I
-
Q
I
--
G
G
L
G
F
-
M
T
F
A
V
L
I
V
M
I
---
L
K
I
G
L
K
E
R
M
L
V
Q
E
A
---------
L
N
Q
P
T
I
G
G
V
I
G
-
L
V
K
V
L
F
L
-
F
-
S
I
S
I
-
E
---
L
I
A
---
A
L
I
L
S
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R
L
VP
Q
Y
G
W
S
S
G
L
F
A
S
L
-
F
--
H
A
I
S
A
F
NNAGFS
L
W
P
D
N
L
-
M
S
Y
V
G
D
-
P
-
T
---
V
-
N
L
V
I
T
F
L
F
I
T
--
G
G
I
G
F
T
V
---
L
---
F
-----
D
---
V
---
M
K
NRR--
F
K
T
F
S
L
H
T
K
L
M
L
T
G
T
L
M
L
N
A
I
A
M
L
--
T
V
F
I
L
E
YS
N
P
G
T
L
G
HLHIVDKL
W
A
S
Y
F
Q
A
V
T
P
R
T
A
G
-------------
F
N
S
L
D
F
G
S
M
R
E
G
T
I
V
F
T
L
L
L
M
F
IGAGSA
S
T
A
S
G
I
K
--
L
T
T
F
I
V
I
L
T
S
V
I
A
Y
L
-
R
GKKETVIFRRSIK
Y
P
I
-
I
I
K
A
-
L
A
V
S
V
T
S
L
F
I
V
F
L
G
I
F
A
L
--
T
I
T
E
Q
A
P
-----
F
L
Q
I
V
F
E
T
F
S
A
F
G
T
V
G
L
T
M
G
L
T
P
E
L
T
T
A
G
K
-
C
I
I
I
V
I
M
------------------
F
--
I
G
R
IGP
L
T
F
V
----
F
S
F
A
------------
K
T
E
Q
S
N
I
--------------
R
-
Y
P
DG
E
V
F
T
G
------------------------------------------------
11
Fugue
67.42
18%
-63
- C4 -
3WJ9
-
EIF2A_SCHPO
A:
[3-412]
--------------------------------------------------------------QKS
Q
F
A
Y
R
S
S
K
S
I
G
L
V
NASEN
Y
----
A
S
P
P
K
F
E
A
I
S
E
P
A
R
N
A
C
Y
S
-
P
N
G
K
L
F
A
-----
Y
A
-
T
A
T
Q
V
V
I
N
D
TES
G
A
K
-
L
T
--
Q
L
P
A
A
-
N
T
Y
E
L
G
F
S
P
L
---
G
K
Y
L
S
T
W
E
R
P
G
-------------
K
E
A
D
G
T
P
K
Q
N
M
K
V
W
N
------
T
E
T
G
-
Q
---
L
V
F
---
S
F
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Q
R
N
Q
T
--
G
W
N
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Q
Y
T
C
D
E
S
-------
L
A
A
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------
L
V
T
N
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H
F
Y
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G
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N
M
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KGP
I
-
A
K
L
R
V
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G
I
S
D
--
F
A
L
-----------
S
-----
P
---
G
---
Q
N
-----
H
A
V
A
V
F
I
P
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K
K
G
A
P
A
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V
R
T
Y
S
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P
N
--
F
N
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P
L
S
--
Q
K
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F
F
K
--------
A
D
K
V
Q
F
K
W
N
A
L
G
T
----------------
S
L
L
V
L
T
Q
D
K
S
N
K
N
Y
Y
G
E
T
T
G
------
Q
F
D
L
D
R
E
GP
I
H
D
V
C
W
N
A
D
S
K
E
F
G
I
-
V
-------------
Y
G
Y
M
P
A
K
T
A
I
F
D
N
R
A
N
V
V
S
I
I
P
P
A
--------
P
R
N
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-----
L
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N
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Y
I
L
L
A
G
F
G
N
L
Q
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D
I
F
D
A
A
N
N
M
K
K
I
T
T
V
E
------------------
A
A
N
C
T
Y
---
C
E
F
S
PDSQ
F
L
L
T
------------
A
V
T
S
P
R
L
RVD
N
S
I
K
I
W
H
ITGA
P
M
F
Y
--
E
E
F
N
E
LY
Q
A
F
W
RPRPLN------------------------------------
20
Fugue
64.53
17%
-167
- C3 -
5EZM
30
?
A:
[28-578]
SAA
T
G
W
V
V
L
F
V
A
V
A
L
V
V
W
F
V
S
L
D
MRHLVGP
D
E
G
R
Y
A
E
I
S
R
E
M
F
A
S
GDWV
T
I
R
Y
NALKYFEKPP
F
H
M
W
V
T
V
V
G
Y
E
L
F
G
L
-----
G
----
E
W
Q
A
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A
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A
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S
G
L
L
G
I
G
V
S
-
M
M
A
A
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R
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FG
A
R
A
A
A
-
F
T
G
L
A
L
L
A
----
A
P
M
-
W
S
--
V
A
A
H
F
---
N
T
L
D
M
T
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A
---
G
V
M
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C
V
L
A
F
M
L
M
G
Q
---------
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P
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C
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A
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A
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R
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--
W
G
L
W
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R
------
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M
L
V
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---
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F
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A
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--------
I
W
A
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V
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N
A
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I
-------------
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N
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F
Y
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A
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Y
A
V
W
V
A
V
A
F
V
V
M
L
L
G
I
A
V
--
A
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L
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R
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A
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Y
A
M
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M
Y
L
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T
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A
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P
A
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A
D
I
A
P
Q
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A
Q
K
LTPEMPLYGVQMLDH
T
--
L
P
F
---
Y
L
R
H
----
P
L
M
M
VGQADEL
T
F
G
A
T
V
E
P
Q
R
V
V
--------------
P
-
D
V
--
D
S
F
T
K
L
W
K
NG
Q
P
A
M
A
V
M
S
P
D
T
Y
L
A
L
A
PT
L
S
M
Y
V
VARDWR
R
V
V
V
A
NVASLAGPQ
18
Fugue
61.76
16%
-50
- C6 -
4QTZ
-
?
A:
[6-326]
----------------------------------------------------------------L
G
N
V
V
C
V
T
G
A
S
G
Y
I
-----
A
----
S
W
L
V
R
L
L
L
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R
G
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A
T
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R
D
P
N
D
P
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--------
K
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D
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L
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L
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----
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A
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---
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Y
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DVKDP
Q
A
E
L
I
D
P
A
L
K
G
-
T
L
N
V
L
N
S
-
C
-
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P
-
S
---
L
------
K
R
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V
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T
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--
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R
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--
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V
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------
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W
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C
A
K
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S
-
N
---
L
-
W
Y
V
V
S
K
T
L
A
E
--
E
A
A
W
K
F
V
---
K
---
E
-----
N
-------------------------
N
I
D
M
V
T
I
N
P
A
M
V
I
GP
L
L
Q
P
V
L
--
N
T
S
A
A
A
--------
I
L
N
L
I
N
G
A
Q
T
F
P
N
A
---------------
S
F
G
W
V
N
V
K
D
V
A
N
A
H
I
L
A
Y
E
N
------
A
S
A
S
G
R
H
--
C
L
V
E
R
V
A
H
Y
S
E
V
V
R
I
-
L
-------------
R
E
L
-
Y
P
S
L
-
Q
L
P
E
-----------------------------
K
C
A
D
D
K
P
Y
V
P
I
Y
Q
V
S
---------
K
E
K
A
K
-
S
L
----------------------------
G
---
L
E
Y
T
----
P
L
E
V
------------
S
I
K
E
T
V
E
--------------
S
-
L
K
E
-
K
K
F
A
N
L-----------------------------------------------
10
HHSearch
40.33
15%
-196
* C5 *
2KBV
-
SL9A1_HUMAN
A:
[454-466]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-
G
-
G
---
L
-
R
G
A
I
A
F
S
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
39.77
10%
-185
- C5 -
3RCE
2
PGLB_CAMLR
A:
[79-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
F
G
S
S
L
S
T
-
L
T
Y
W
L
Y
S
-
I
L
P
F
S
F
E
S
---
I
I
L
Y
M
S
T
F
F
A
S
L
I
V
--
V
P
I
I
L
I
A
R
E
Y
K
L
-
T
T
Y
G
F
I
A
A
L
------
L
G
S
I
A
N
S
Y
Y
N
R
T
M
S
G
-
Y
---
Y
D
T
D
M
L
V
L
V
L
P
M
--
L
I
L
L
T
F
I
---
R
L
T
I
N
K----
D
I
F
T
L
---
L
L
-----
S
P
I
F
I
M
I
Y
L
W
W
Y
P
S
S
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.11
9%
-163
- C5 -
5EZM
9
?
A:
[87-228]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
P
P
F
H
M
W
-
V
T
V
V
G
Y
E
L
F
-
G
L
G
E
-
W
Q
A
R
L
A
V
---
A
L
S
G
L
L
G
I
--
G
V
S
M
M
A
A
R
R
W
F
G
A
R
A
-
A
A
F
T
G
L
------
A
L
L
A
A
P
M
W
S
V
A
A
H
-
F
-
N
---
T
-
L
D
M
T
L
A
G
V
M
S
--
C
V
L
A
F
M
L
M
G
Q
H
P--
D
AS
V
A
A
R
---
R
G
W
M
V
A
-----
C
W
A
A
M
G
V
A
I
L
T
K
G
L
V
G
I
A
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.82
18%
-167
- C5 -
2LOM
-
HIG1A_HUMAN
A:
[66-82]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
A
Q
G
F
V
V
G
A
M
T
--
V
G
M
G
Y
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
28.33
38%
-83
- C2 -
3M1F
-
?
V:
[10-17]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
E
-
Q
---
I
-
R
Q
G
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.04
27%
-63
- C1 -
2MY2
-
B:
[315-325]
----------------------------------------------------------------------------------------------------------------------------------
P
----
G
S
R
-
W
D
---
G
V
H
R
-
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.37
12%
-160
- C5 -
2LON
-
HIG1B_HUMAN
A:
[67-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
A
Q
A
C
A
V
G
A
I
M
--
L
G
A
V
Y
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
24.82
26%
-137
* C6 *
4KT0
-
PSAM_SYNY3
M:
[2-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
S
D
T
Q
I
--
L
A
A
L
V
V
A
L
L
P
A
F
L
A
F
-
R
-------------
L
S
T
-
E
L
Y
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
21.08
42%
-82
- C6 -
1IQ5
-
?
B:
[4-27]
------------------------------------------------------------------------------------------------------------------------
I
P
R
L
D
T
L
I
L
V
K
----
A
M
G
-
H
R
KR
F
G
N
P
F
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
21.00
25%
4
- C5 -
3X38
-
SLD7_YEAST
A:
[16-40]
--------------------------------------------------------------------------------------------------------------------------------
I
L
G
----
G
L
R
L
R
G
--
I
S
N
S
I
-
T
D
Y
Q
K
L
Y
K
I
T
---
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
20.06
16%
-63
- C5 -
1T5Q
-
A:
[1-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
E
G
T
-------------
F
I
S
D
Y
S
I
A
M
D
K
I
H
Q
Q
D
F
V
N
W
L
L
------
A
Q
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
3.12
11%
-7
- C5 -
1JO6
-
KCMB2_HUMAN
A:
[1-45]
------------------------------------------------------------------------------------------------------------------------------
M
F
I
W
T
----
S
G
R
-
T
S
--
S
S
Y
R
H
-
D
E
K
R
N
I
Y
Q
K
I
---
R
D
H
D
L
L
D
K
R
K
T
V
T
A
---------
L
K
A
G
E
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------