@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu34370: (2016-07-28 )
MNENMSFKELYAIVRHRFVLILLITIGVTLIMGFVQFKVISPTYQASTQVLVHESDGEENSNLSDIQRNLQYSSTFQSIMKSTALMEEVKAELHLSESASSLKGKVVTSSENESEIINVAVQDHDPAKAAEIANTLVNKFEKEVDERMNVQGVHILSEAKASESPMIKPARLRNMVMAFGAAVMGGITLAFFLHFLDDTCKSARQLSERTGLPCLGSVPDVHKGRNRGIKHFGE
Atome Classification :
(20 SA)
---------------.........10........20...--------------.....30.----.....------------..40........50.........60.-----.-..-----....70........80------------------........90....-..---------..--------------100......-.110------...---.-------------...120.-....-----..130...---....140...----....150---------------.........160.......170-..---.....180......----.190.......200.......210.---......220........230..------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------MNENM
S
F
K
E
L
Y
A
I
V
R
H
R
F
V
L
I
L
L
I
--------------
T
I
G
V
T
L
I
M
----
G
F
V
Q
F
------------
K
V
ISPTYQA
S
T
Q
V
-
L
V
HESDGEENS
N
-----
L
-
S
D
-----
I
Q
R
NLQ
Y
S
S
T
F
Q
S
I
M
K
------------------
S
T
A
L
M
E
E
V
K
A
E
LH
L
-
S
E---------SA--------------SSLK
G
K
V
V
T-SSEN------ES
E
---
I
-------------
I
N
V
A
VQD-HDP
A
-----
K
A
A
E
I
A
N
T
---
L
V
N
K
F
E
K
E
V
D
----
E
RMNV-----------------Q
G
V
H
I
L
SEAKASESPMI
K
P
A
R
L
-
R
N
---
M
V
M
A
F
G
A
A
V
M
G
G
I
T
----
L
A
F
F
L
H
F
L
D
D
T
C
K
S
A
R
Q
L
S
E
RTGLP---CLGSVPD-VHKGRNRGIKHFGE------------------------------------------------------
37
Fugue
61.36
16%
33
* C5 *
2IXS
7
?
A:
[5-323]
NDIDETAAT
I
D
T
A
R
A
L
L
K
S
F
G
F
E
A
Q
R
H
N
V
R
S
A
V
T
L
L
A
L
A
GLKPGDHWAD
S
T
T
P
R
L
G
V
Q
K
I
M
----
D
W
S
G
A
YWA
K
P
Y
A
TGS
R
E
D
F
R
K
K
T
L
R
Q
W
V
D
N
G
F
A
V
L
N
P
D
N
L
N
I
A
-----
T
-
N
S
-----
Q
L
N
E
Y
C
L
S
D
E
A
A
Q
A
I
R
S
YGTDA
F
E
S
A
L
V
D
F
L
S
K
A
S
D
T
V
R
A
R
A
E
A
L
R
A
A
-
M
I
---------
S
V
--------------
D
L
A
D
G
D
E
F
L
L
S
P
A
G
------
Q
N
P
---
L
-------------
L
K
K
M
V
E
E
-
F
M
P
R
FAPGA
K
V
L
Y
I
G
D
T
RGK
H
T
R
F
E
K
R
I
F
E
----
E
T
L
G
L
TFDPHGRMPD
L
V
L
H
DKV
R
K
W
L
F
L
M
E
A
V
K
S
K
G
P
-
F
D
E
E
R
H
-
R
T
---
L
R
E
L
F
A
T
P
V
A
G
L
V
F
----
V
N
C
F
E
N
-
R
E
A
M
R
Q
W
L
P
E
L
A
W
E
T
E
A
W
---
V
A
D
D
P
D
H
L
I
H
L
N
G
S
R
F
L
G
P
Y
E
R
------------------------------------------------------
1
PsiBlast_PDB
50.98
25%
-23
- C6 -
4Q6M
2
?
A:
[89-187]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
N
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
S
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.54
25%
-18
- C6 -
4Q6O
2
?
A:
[89-187]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
N
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
S
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.49
25%
-22
- C6 -
4Q6N
2
?
A:
[89-187]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
N
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
S
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.29
25%
-22
- C6 -
4Q6Q
2
?
A:
[89-187]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
N
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
S
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.78
25%
-22
- C6 -
4Q6P
4
?
A:
[89-187]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
N
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
S
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.87
24%
-27
- C6 -
4WCL
11
?
A:
[91-193]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
K
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
N
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
47.42
24%
-30
- C6 -
4WCK
13
?
A:
[91-189]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
K
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
N
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
47.38
24%
-27
- C6 -
4WCM
17
?
A:
[91-193]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
K
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
N
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.35
24%
-29
- C6 -
4WCN
16
?
A:
[91-195]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
K
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
N
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.16
24%
-20
- C6 -
5D2R
11
?
A:
[91-189]
------------------------------------------------------------------------------------------------------
G
D
M
N
R
K
-----
F
-
A
A
-----
L
D
K
K
D
P
E
Y
P
T
I
Q
E
I
-
K
------------------
S
L
I
A
K
P
N
I
D
A
V
L
H
L
-
H
D
---------
G
G
--------------
G
Y
Y
R
P
V
Y
V
D
-
A
M
L
N
------
P
K
R
---
W
-------------
G
N
C
F
I
I
D
-
Q
D
E
V
-----
K
G
A
K
F
P
N
L
---
L
A
--
F
A
N
N
T
I
----
E
S
I
N
A
-----------------
H
L
L
H
P
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.44
13%
8
- C6 -
3B8M
-
?
A:
[64-207]
---------------------------------------------------------------------------------------
K
W
T
S
A
A
V
V
-
T
P
P
E
P
V
Q
W
Q
E
L
E
K
T
F
T
K
L
-
R
V
L
D
L
D
I
K
I
D
R
T
E
A
F
N
L
F
I
K
K
F
Q
------------------
S
V
S
L
L
E
E
Y
L
R
S
S
P
Y
-
V
M
D
QDELD
L
H
R
A
I
--------------
V
A
L
S
E
K
M
K
A
-
V
D
D
N
ASKKKD
E
P
S
L
Y
T
S
-------------
W
T
L
S
F
T
A
-
P
T
S
E
-----
E
A
Q
T
V
L
S
G
---
Y
I
D
Y
I
S
A
L
V
V
----
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
40.94
15%
-289
- C6 -
1YZ7
-
IF2A_PYRAB
A:
[214-254]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
F
-
T
Y
L
-------
G
A
P
---
R
-------------
Y
R
I
D
I
T
A
-
P
D
Y
Y
-----
K
A
E
E
V
L
E
S
---
I
A
E
E
I
L
R
V
I
K
----
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
40.30
15%
17
- C5 -
1X7D
9
?
A:
[2-341]
T
Y
F
I
D
V
P
T
M
S
D
L
V
H
D
I
G
V
A
P
F
I
G
E
L
A
A
A
L
R
D
D
F
K
R
W
Q
A
F
--------------
D
K
S
A
R
V
A
S
H
S
EV
G
V
I
E
L
M
-----------
P
V
A
D
K
S
R
Y
A
F
K
Y
V
-
N
G
H
P
A
N
T
A
R
N
L
H
T----
V
M
A
F
-----
G
V
L
A
D
V
D
S
G
Y
P
V
L
L
S
E
------------------
L
T
I
A
T
A
L
R
T
A
A
T
S
L
M
A
A
---------
Q
A
L
ARPNAR
K
M
A
L
I
G
N
G
A
Q
S
E
F
Q
A
L
-
A
F
H
K
------
H
L
G
---
I
-------------
E
E
I
V
A
Y
D
-
T
D
P
L
-----
A
T
A
K
L
I
A
N
---
L
K
E
Y
S
G
L
T
I
R
R
A
SS
V
A
E
A
V
-----------------
K
G
V
D
I
I
T
T
V
T
A
D
K
A
Y
A
T
I
I
T
P
D
M
L
E
PG
M
H
L
N
A
V
G
G
D
C
P
G
K
T
E
LH
A
D
V
L
R
N
A
R
V
F
V
E
Y
E
P
Q
T
R
I
E
G
E
I
Q
Q
L
P
ADF
P
V
V
D
L
W
R
-
V
L
R
G
E
T
E
G
R
Q
S
D
S
Q
V
T
V
FDSVGF
A
L
E
D
Y
T
V
L
R
Y
V
L
Q
Q
A
E
K
R
G
M
G
T
K
I
DLVPWVEDDPKD
L
F
S
H
T
RGRA
20
HHSearch
38.98
19%
-195
- C6 -
2QN6
-
B:
[43-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
K
I
-
Y
T
I
-------
G
A
P
---
R
-------------
Y
R
V
D
V
V
G
-
T
N
P
K
-----
E
A
S
E
A
L
N
Q
---
I
I
S
N
L
I
K
I
G
K
----
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
38.20
26%
64
- C6 -
1IPF
2
TRN2_DATST
A:
[26-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---------
E
L
--------------
A
S
L
G
A
S
V
Y
T
-
C
S
R
N
------
Q
K
E
---
L
N
D
C
L
T
Q
W
R
S
K
GFK
V
E
A
S
V
C
D
L
S
S
R
S
-----
E
R
Q
E
L
M
N
T
---
V
A
N
H
F
H
G
K
L
N
----
I
L
V
N
N
-----------------
A
G
I
V
I
Y
K
E
A
K
--------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
37.76
26%
67
- C6 -
1IPE
1
TRN2_DATST
A:
[26-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---------
E
L
--------------
A
S
L
G
A
S
V
Y
T
-
C
S
R
N
------
Q
K
E
---
L
N
D
C
L
T
Q
W
R
S
K
GFK
V
E
A
S
V
C
D
L
S
S
R
S
-----
E
R
Q
E
L
M
N
T
---
V
A
N
H
F
H
G
K
L
N
----
I
L
V
N
N
-----------------
A
G
I
V
I
Y
K
E
A
K
--------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
36.36
26%
76
- C6 -
2AE2
2
TRN2_DATST
A:
[27-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---------
E
L
--------------
A
S
L
G
A
S
V
Y
T
-
C
S
R
N
------
Q
K
E
---
L
N
D
C
L
T
Q
W
R
S
K
GFK
V
E
A
S
V
C
D
L
S
S
R
S
-----
E
R
Q
E
L
M
N
T
---
V
A
N
H
F
H
G
K
L
N
----
I
L
V
N
N
-----------------
A
G
I
V
I
Y
K
E
A
K
--------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
36.09
26%
79
- C6 -
2AE1
-
TRN2_DATST
A:
[27-111]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---------
E
L
--------------
A
S
L
G
A
S
V
Y
T
-
C
S
R
N
------
Q
K
E
---
L
N
D
C
L
T
Q
W
R
S
K
GFK
V
E
A
S
V
C
D
L
S
S
R
S
-----
E
R
Q
E
L
M
N
T
---
V
A
N
H
F
H
G
K
L
N
----
I
L
V
N
N
-----------------
A
G
I
V
I
Y
K
E
A
K
--------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
35.19
10%
-109
- C6 -
1WJW
-
A:
[59-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
V
-
R
P
S
G
------
T
E
D
---
I
-------------
V
R
V
Y
A
E
A
-
N
S
Q
E
-----
S
A
D
R
L
A
Y
E
---
V
S
L
L
V
F
Q
L
A
G
----
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------