@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35230: (2016-07-29 )
MKRASIVREKKYYELVEQLKDRTQDVTFSATKALSLLMLFSRYLVNYTNVESVNDINEECAKHYFNYLMKNHKRLGINLTDIKRSMHLISGLLDVDVNHYLKDFSLSNVTLWMTQER
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10........20...-.....30........40....--....50..-....---..60........70........80........90--.....-.---------..100.......110.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
R
A
S
I
V
R
E
-
K
K
Y
Y
E
L
V
E
Q
L
K
D
R
TQ-DV
T
F
S
A
T
K
A
L
S
L
L
M
L
F
S
R
Y
L
V--NYTNVE
S
V
-
N
D
I
N
---
E
E
C
A
K
H
Y
F
N
Y
L
M
KN
H
K
RLGI
N
L
T
D
I
K
R
S
M
H
L
I
S
G
--
L
L
DV
D
-
V
---------
N
H
Y
L
K
DFSLS
N
V
T
L
W
M
TQER---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
62.49
18%
-272
- C4 -
2KD1
-
?
A:
[38-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
I
P
S
L
G
--
N
----
I
K
L
-
A
K
L
T
---
S
L
H
M
Q
N
Y
V
N
S
L
R
D
E
----
G
L
K
R
G
T
I
E
K
I
I
K
V
I
R
N
--
S
L
E
H
A
-
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
59.01
20%
-5
- C3 -
4UZY
2
?
A:
[9-650]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQPA
R
P
I
A
EGQ
Y
T
Q
T
I
Y
T
L
I
K
E
-
Q
K
F
A
E
A
I
Q
H
L
Q
Y
Q
L
Q
-
N
V
P
E
S
-
R
A
A
L
S
L
L
G
Y
C
Y
Y
Y
T
-----
G
Q
Y
D
M
A
-
S
Q
M
Y
---
E
Q
L
V
T
L
Y
P
S
---
N
E
D
Y
K
L
Y
Y
A
Q
S
L
Y
K
G
G
M
Y
P
E
A
S
--
K
A
V
V
K
-
V
---------
E
G
H
Q
K
A
V
T
T
L
L
V
A
C
S
Y
E
Q
D
D
L
T
G
C
R
R
Q
L
D
K
CAPED
P
D
T
M
V
N
T
G
C
I
M
F
K
E
GK
F
E
A
A
R
Q
K
F
N
DYQ
P
E
L
L
Y
N
I
A
L
C
Y
Y
K
TKQ
F
G
P
A
L
K
H
L
A
E
I
I
E
K
A
V
R
E
HPELSVGSDGMEVRSVGNS
Q
T
L
K
E
T
A
L
I
E
A
F
N
L
K
A
A
I
E
Y
T
M
KN
V
E
A
A
K
E
A
L
T
D
MPPRAEEELD
P
V
T
L
H
N
S
A
L
I
N
M
DSD
P
T
G
G
F
K
K
L
N
F
L
L
Q
S
PPFPPE
T
F
A
N
L
L
L
L
Y
C
KPSHGF
Y
D
L
A
A
D
V
L
A
E
N
P
Q
Y
A
G
K
LLS
P
D
L
Y
D
Y
L
Q
A
A
I
G
R
YKS
P
E
E
A
F
R
R
F
D
E
L
A
T
R
H
V
E
Q
L
R
R
L
T
K
Q
I
Q
D
A
R
I
A
RD
N
D
A
I
K
R
A
I
N
E
Y
D
E
A
L
E
A
Y
I
P
G
L
M
A
M
A
S
I
Y
W
D
M
EL
Y
S
N
V
E
K
I
F
R
Q
S
AEFCSEH
E
V
W
K
L
N
V
A
H
T
F
F
M
Q
DNH
Y
K
E
A
I
R
Y
Y
E
P
V
V
K
K
N
A
DNLLGVT
A
I
V
L
A
N
L
C
V
S
Y
I
M
T
SQ
N
E
E
A
E
E
L
M
R
K
V
E
K
E
E
E
R
S
S
M
Q
DPDKPCF
H
L
C
I
I
N
L
V
I
G
T
L
Y
C
A
K
GN
Y
E
F
G
V
S
R
I
I
K
S
L
EE
T
D
T
W
Y
Y
A
K
R
C
F
L
A
L
I
E
N
L
A
K
H
MIVLK
D
S
S
F
T
E
I
M
A
F
L
N
E
A
E
K
H
G
K
D
I
R
V
V
F
NQSRT
I
A
S
E
A
R
M
L
K
K
M
F
L
K
L
R
13
HHSearch
58.36
16%
-248
- C4 -
1XO0
-
RECR_BPP1
A:
[46-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
V
C
R
S
W
A
A
W
C
K
--
L
N
N
--
R
K
W
-
F
P
A
E
---
P
E
D
V
R
D
Y
L
L
Y
L
Q
A
----
R
G
L
A
V
K
T
I
Q
Q
H
L
G
Q
L
N
M
--
L
H
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
55.45
9%
-223
- C4 -
3NRW
-
?
A:
[32-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
R
Y
R
L
K
H
F
V
E
W
A
E
--
E
R
-
D
I
T
A
M
-
R
E
L
T
---
G
W
K
L
D
E
Y
E
T
F
R
R
G
S
----
D
V
S
P
A
T
L
N
G
E
M
Q
T
L
K
N
--
W
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
50.87
13%
-210
- C4 -
2KHQ
-
?
A:
[29-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
A
Y
K
H
I
K
D
H
F
R
--
H
----
K
L
L
-
K
D
I
K
---
R
T
E
Y
Q
K
F
L
N
E
Y
G
L
-----
T
H
S
Y
E
T
I
R
K
L
N
S
Y
I
R
N
--
A
F
D
D
A
-
I
---------
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
49.99
17%
-193
- C4 -
2KEY
-
?
A:
[36-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
M
R
K
F
K
E
Y
C
E
--
G
----
L
Q
F
-
H
E
L
T
---
E
D
F
L
R
D
Y
L
I
Y
M
K
K
T
---
L
C
N
A
D
S
T
A
Q
R
N
L
S
T
I
K
I
--
Y
V
S
A
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
49.89
13%
-44
* C3 *
4EQQ
9
?
A:
[6-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
F
S
K
V
--
P
-
K
E
Y
R
T
A
V
S
K
A
K
Q
Y
A
S
-
T
V
H
M
S
K
E
E
L
R
S
Q
L
V
S
F
D
K
Y
S
Q
--
D
A
S
D
-
Y
A
V
-
E
N
S
G
---
I
D
Y
N
K
Q
A
L
E
K
A
K
Q
Y
Q
D
T
L
S
M
S
P
D
A
I
R
D
Q
L
V
S
F
D
K
--
F
T
Q
E
E
-
A
---------
D
Y
A
V
A
N
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
49.76
10%
-236
- C4 -
3LYS
-
?
A:
[89-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
L
K
T
Y
M
P
--
N
----
V
L
I
-
S
E
I
T
---
A
S
S
Y
Q
R
A
L
N
K
F
A
E
T
-----
H
A
K
A
S
T
K
G
F
H
T
R
V
R
A
--
S
I
Q
C
L
-
I
---------
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
47.34
2%
-268
- C4 -
2KIW
-
?
A:
[91-144]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
Q
H
A
I
E
R
F
N
--
T
----
K
P
I
-
Q
T
I
K
---
K
H
D
Y
Q
R
F
V
D
D
I
S
A
Q
-----
Y
S
K
N
Y
V
D
S
I
V
A
S
T
N
M
--
I
F
K
Y
A
-
Y
---------
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.84
9%
-235
- C4 -
2KJ5
-
?
A:
[46-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
V
-
E
D
V
K
---
P
R
H
I
D
D
V
L
K
A
V
M
K
R
-----
G
A
P
S
I
A
N
D
T
L
R
W
L
K
R
--
M
F
N
Y
A
-
I
---------
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
41.51
18%
-0
- C3 -
2MN4
-
?
A:
[1-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
P
E
-
Q
R
-----
E
F
L
P
E
I
L
A
-
E
I
I
A
N
L
D
P
T
K
I
L
E
E
L
L
R
R
G
L
L
--
T
P
A
E
L
Q
E
V
-
L
D
L
K
T
P
-
E
E
Q
A
K
K
L
I
D
F
I
L
K
------
L
S
P
A
D
V
Q
A
R
I
N
V
L
R
A
--------------------
H
G
Y
Q
A
L
A
D
K
L
N
K
Y
L
T
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.53
5%
-215
- C4 -
2KKP
-
?
A:
[48-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
L
-
K
K
L
Q
---
P
A
D
I
Q
R
L
Y
A
S
K
L
E
S
----
G
L
S
P
T
R
V
R
Y
I
H
V
V
L
H
E
--
A
M
S
Q
A
-
R
---------
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.05
18%
-26
- C3 -
4KKI
20
TCO1_HUMAN
A:
[24-434]
E
I
C
E
V
S
EENYIRL
K
P
L
L
N
T
M
I
Q
SNYNRGTSA
V
N
V
V
L
S
L
K
L
V
GIQI
Q
T
L
M
Q
K
M
I
Q
Q
I
K
Y
N
V
K
SRLSDVS
S
G
E
L
A
L
I
I
L
A
L
G
VCRN
A
E
E
N
L
I
Y
D
Y
H
L
I
D
K
L
E
N
K
F
Q
A
E
I
E
N
M
E
A
H
NGTPLTN
Y
Y
Q
L
S
L
D
V
L
A
L
C
L
F
NGNYS
T
A
E
V
V
N
H
FTPENKNYYFGSQFS
V
D
T
G
A
M
A
V
L
A
L
T
C
V
K
K
S
L
I
N
GQIKADEG
S
L
K
N
I
S
I
Y
T
K
-
S
L
V
E
K
I
L
S
E
K
K
E
N
G
L
I
G
N
T
F
S
T
G
E
A
M
Q
A
L
F
V
S
S
D
Y
Y
N
EN
D
W
N
C
Q
Q
T
L
-
N
T
V
L
---
T
E
I
S
Q
G
A
F
S
-----------
N
P
N
A
A
A
Q
V
L
P
A
L
M
G
KT
F
L
D
I
N
-
K
DSSCVSA
S
G
N
F
N
I
Q
S
Y
I
S
V
N
Y
S
V
R
I
N
E
T
Y
F
T
N
V
T
V
L
NGSV
F
L
S
V
M
E
K
A
Q
K
M
NDTIF
G
F
T
M
E
E
R
SWGPYITCIQG
L
C
A
N
NNDR
T
Y
W
E
L
L
S
GGEPLSQGAGS
Y
V
V
R
N
GEN
L
E
V
R
WSKYL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
39.17
12%
-220
- C4 -
2KOB
-
?
A:
[102-143]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
L
-
S
E
I
L
---
P
A
D
I
Q
S
I
I
N
E
T
K
-------
L
A
K
N
T
L
K
A
I
R
N
T
A
S
Q
--
I
F
R
L
A
-
I
---------
E
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
38.73
19%
43
- C3 -
4RS7
-
?
A:
[375-461]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
L
E
S
L
Y
R
A
M
P
S
I
K
K
L
V
D
E
G
K
--------
L
T
E
K
D
A
E
K
V
Y
E
I
W
R
N
-------------
M
E
A
I
Y
---
K
Q
A
S
L
L
W
Y
N
T
V
D
L
L
L
K
R
I
G
L
S
E
K
E
R
E
E
I
F
Y
----------
E
M
V
---------
R
P
Y
F
R
L
F
S
R
E
E
V
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
38.30
35%
-
* C4 *
2XUS
2
BRMS1_HUMAN
A:
[23-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
K
E
-
K
L
F
R
E
R
L
S
Q
L
R
L
R
L
E
-
E
V
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
37.62
14%
-90
- C3 -
1LJP
-
ELIB_PHYCI
A:
[1-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
C
T
A
T
Q
Q
-
T
A
A
Y
K
T
L
V
S
I
L
S
--
E
-
S
S
F
S
Q
C
S
K
D
S
G
Y
S
M
L
T
A
T
A
L
P
--
T
N
A
Q
Y
K
L
M
-
C
A
-
S
---
T
A
C
N
T
M
I
K
K
I
V
A
L
N
P
P
---------
D
C
D
L
T
V
P
T
S
--
G
L
V
L
D
-
V
---------
Y
T
Y
A
N
G
F
S
S
K
C
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.26
21%
-138
- C4 -
2RKK
-
VTA1_YEAST
A:
[33-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
I
L
S
E
E
D
R
S
Q
-
E
M
T
A
L
A
T
E
L
L
D
T
I
E
A
F
K
K
E
I
G
----------------------
L
H
V
M
N
T
L
I
H
D
Q
E
K
A
K
I
Y
M
L
N
F
T
M
S
L
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
35.86
22%
-37
- C2 -
2LU7
-
A:
[1-82]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
V
R
S
T
P
G
-
G
D
-
L
E
L
V
V
H
L
S
G
P
G
G
-
P
V
---------------
R
W
Y
K
--
D
G
E
R
L
A
S
Q
-
G
R
V
Q
---
L
E
Q
A
G
--------------------
A
R
Q
V
L
R
V
Q
G
--
A
R
S
G
D
-
A
---------
G
E
Y
L
C
D
A
P
Q
D
S
R
I
F
L
V
S
V
E
E
P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
32.68
22%
-42
- C4 -
2XPH
2
SENP1_HUMAN
A:
[12-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
F
P
E
I
T
E
E
M
E
K
E
I
K
-
N
V
F
R
N
G
N
Q
D
E
V
L
S
E
A
F
-
R
L
T
I
--
T
R
K
D
I
Q
T
L
-
N
H
L
N
W
L
N
D
E
I
I
N
F
Y
M
N
M
L
M
E
R
S
K
E
K
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------