@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35800: (2016-07-30 )
MQIDSDLQNNLDTLKKTLGQNDDMMFYTFAFGDSRQKACLLYIDGLTENKMLAQYVISPLQKEALAHKECSIEDLSAFFFGFHHSVVSTMKEIEQLVFSGQAILLADGYRGGLAFDTKSVATRSLDEPSSEVVERGPKIGFIEKLRTNTALLRERTSDPNLVIKEMTLGKRTKKKIAVAYIQDIAPDYVVKEVFKRLKSVNIDNLPESGTLEQLIEDEPFSIFPTILSTERPDRVESSLLEGRVSILVDGTPFALIVPATVDEFIHSPDDYSQRWIPMSLVRLLRYSSILITIYLPGLYISLVSFHTGLLPTRMAISIAGSRLNVPFPPFVEAFIMIFTIELIREAGLRLPKPIGQTIGLIGGVVIGQAAVQAQIVSALMVIVVSVTALASFTVPSYAYNFPLRIIRIGVMISATALGMYGVIMVYLFVIGHLMRLKSFGQDYIIPIMAQPGQDLKDTVIRIPTMFLKRRPTRNDPEDNIRQR
Atome Classification :
(20 SA)
------------------------------------.......--..10........20........30........40..---......50........60........70........-80.........90.----.......100.......--110.......120--...----.....130.......---------140.-.....----.150.....-----------..160.......170.......180.....-------------..190......--.200.......210-...-------.....220.......230.--......---240-----......----------..250---.......260.......270.......280-----.........290......------------------------.300.......310...-----------....320.......330.......340......-----.350.......360.......370.......380...----....390.......400.......410.......420.......430---.........440.......450----------........460.......-------470.......480.------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------MQI
D
S
D
L
--
Q
N
N
L
D
T
L
K
K
T
LGQND
D
M
M
F
Y
T
F
AFGDSR
Q
K
A
C
L
L
Y
I---DGLTE
N
K
M
L
A
Q
Y
V
I
S
P
L
Q
K
E
A
L
AHKEC
S
I
E
D
L
S
A
F
F
-
F
-
G
F
H
H
S
V
V
S
T
M
K
E
----
I
E
Q
L
V
FSG
Q
A
I
L
L
ADGY--RGGLAFD
T
K
S
V
A
---TRS----LDE
P
S
S
E
V
V
E
RGPKI---------
G
F
I
E
-
K
LRT
N
----
T
A
L
L
R
ERTS-----------DP
N
L
V
I
K
EMTLGKR
T
K
K
K
I
A
V
A
Y
I
Q
DIA
P
D
-------------
Y
V
V
K
E
V
F
K
R
L
K--SVNIDNLPES
G
T
L
--
E
Q
L
-------IEDEPF
S
I
F
P
T
I
LSTER
P
D
--
R
V
E
S
S
L
---LE------G
R
V
S
I
L
----------VDGT
P
---
F
A
L
I
VP
A
T
V
D
E
FIHSPDDYSQRW
I
P
M
S
L
-------
V
R
L
L
R
YS
S
I
L
I
T
I
YLP
G
L
------------------------
Y
I
S
L
V
S
F
H
TGLLP
T
R
M
A
-----------
I
S
IAGSRLNVPF
P
P
F
V
E
A
F
I
M
I
F
T
I
E
L
I
R
E
AGL-----RLPK
P
I
G
Q
T
I
G
L
I
G
G
V
V
I
G
Q
A
A
V
Q
A
Q
I
V
S
A
L
M
V
I
V
V
S
----
V
T
A
L
A
SFTVPSYAYNFP
L
R
I
I
R
I
G
V
M
I
S
A
T
A
L
G
M
Y
G
V
I
M
V
Y
L
F
V
I
-----
G
H
L
M
R
L
K
SFGQD
Y
I
I
P
I
MAQP-----------GQ
D
L
K
D
T
V
I
R
I
P
T
M
F
L
KR-------RPTRNDP
E
D
NIRQR------------------------------------------
22
Fugue
70.60
16%
-1
* C5 *
4BS9
1
?
A:
[3-781]
PTALQIKPHFHVEIIEP
K
Q
V
Y
L
L
G
EQ
G
N
H
A
L
T
G
Q
L
Y
C
Q
I
L
P
F
L
NG
E
Y
T
R
E
Q
I
V
E
K
L
D
G
Q
V
P
E
E
Y
I
D
F
V
L
S
R
L
V
E
K
G
Y
L
T
E
V
APE
L
S
L
E
V
A
A
F
W
S
E
L
G
I
A
P
S
V
V
A
E
G
L
K
Q
P
V
T
V
T
T
A
G
K
G
I
R
E
-
G
I
V
A
N
L
A
A
A
L
E
E
A
G
I
Q
V
S
D
P
T
A
Q
L
Q
V
V
L
T
D
D
Y
L
--
Q
P
E
L
A
A
I
N
K
E
A
L
---
E
R
Q
Q
P
W
L
L
V
K
P
V
G
S
I
L
W
L
G
P
L
F
VPGETGC
W
H
C
L
A
Q
-
R
L
Q
G
N
R
E
V
E
A
S
V
L
Q
Q
K
R
A
L
QERP
T
A
R
A
T
L
P
S
T
L
Q
T
G
L
Q
W
A
A
T
E
I
A
K
W
M
V
K
R
H
L
N
A
I
A
P
G
TARFPTLAG
K
I
--
F
T
F
N
Q
T
T
L
E
L
K
--
A
H
P
L
S
R
R
P
Q
C
P
T
C
GD
R
E
T
-------
L
Q
R
R
G
F
E
P
L
K
L
E
S
R
P
K
H
P
E
--
Q
T
V
Q
K
Y
---
Q
H
LIGPIT
G
V
V
T
E
L
----------
V
R
S
R
A
---
S
G
L
C
E
A
I
E
R
Y
S
G
I
F
Q
G
D
E
P
R
K
R
A
T
L
A
E
L
GDLAIH
P
E
Q
C
L
H
F
S
D
R
Q
Y
D
N
R
E
S
S
N
E
R
ATVTHDWIPQRFDAS
K
A
H
D
W
T
P
V
W
S
L
T
E
Q
T
H
K
Y
L
P
T
A
L
C
YYRYPFPPEHR
F
C
R
S
D
S
N
G
N
A
A
G
N
T
L
E
E
A
I
L
Q
G
F
M
E
L
V
E
R
D
S
V
C
L
W
W
Y
N
R
V
S
R
P
A
V
D
L
S
S
F
D
E
P
Y
F
L
Q
L
Q
Q
F
Y
Q
T
Q
N
R
D
L
W
V
L
D
L
T
ADLG
I
P
A
F
V
G
V
S
N
R
K
A
G
S
S
E
R
I
-
I
L
G
F
G
A
H
L
D
P
T
V
A
I
L
R
A
L
T
E
V
N
Q
I
G
L
E
LDAT
D
W
L
V
N
A
T
L
A
A
S
P
Y
L
V
A
D
A
S
Q
P
L
K
T
AKDYPRRW
S
D
D
I
Y
T
D
V
M
T
C
V
E
I
A
K
Q
A
G
L
E
T
L
V
L
D
Q
T
R
P
D
I
G
L
N
V
V
K
V
I
V
P
G
M
R
F
W
SRFGSGR
L
Y
D
V
P
V
K
L
GWRE
Q
P
L
A
EAQMNPTPMPF
4
PsiBlast_PDB
39.65
32%
-64
- C3 -
3THW
-
MSH3_HUMAN
B:
[736-792]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
E
-
E
L
T
D
T
----
A
E
I
I
R
K
A
T
S
-----------
Q
S
L
V
I
L
D
E
L
G
R
G
T
S
T
H
D
G
I
A
I
A
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
38.69
32%
-63
- C3 -
3THZ
-
MSH3_HUMAN
B:
[736-792]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
E
-
E
L
T
D
T
----
A
E
I
I
R
K
A
T
S
-----------
Q
S
L
V
I
L
D
E
L
G
R
G
T
S
T
H
D
G
I
A
I
A
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
38.64
30%
-154
- C4 -
2KBC
1
A:
[2-20]
----------------------------------------------------------------------------------------------------
D
L
Q
T
L
C
C
T
D
G
C
S
M
T
D
L
S
A
L
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
35.92
13%
-224
- C3 -
1TKS
-
RIB3_CANAL
A:
[5-34]
---------------------------------------------------------------------------------------------------------------------------------
F
T
P
I
E
E
----
A
L
E
A
Y
K
N
G
E
F
L
I
V
M
D
D
E
--
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.54
28%
-40
- C3 -
3B5I
1
IAMT1_ARATH
A:
[72-163]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-------------
F
I
V
K
H
I
S
K
R
F
D
--
A
A
G
I
D
P
-
P
E
---
F
--
T
A
F
-------
F
S
D
L
P
S
N
D
F
N
T
L
F
Q
L
-
L
P
P
--
L
V
S
N
T
-----
E
ECD---
G
N
R
S
Y
F
----------
V
A
G
V
P
G
S
F
Y
R
R
L
F
P
A
R
T
I
D
F
F
H
S
A
--
F
S
L
H
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
35.29
32%
-71
- C3 -
3THX
1
MSH3_HUMAN
B:
[736-792]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
E
-
E
L
T
D
T
----
A
E
I
I
R
K
A
T
S
-----------
Q
S
L
V
I
L
D
E
L
G
R
G
T
S
T
H
D
G
I
A
I
A
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
35.26
32%
-70
- C3 -
3THY
-
MSH3_HUMAN
B:
[736-791]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
E
-
E
L
T
D
T
----
A
E
I
I
R
K
A
T
S
-----------
Q
S
L
V
I
L
D
E
L
G
R
G
T
S
T
H
D
G
I
A
I
A
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
35.10
19%
-6
- C1 -
4MT5
-
?
A:
[0-183]
------------------------------------------------------------------------
M
Q
T
A
Y
V
K
Y
V
---
D
D
-
T
T
G
E
T
L
R
Q
D
D
L
H
G
Y
T
D
E
T
I
P
Y
----------------------
S
T
A
E
G
----
I
K
K
Y
E
G
D
G
-
Y
V
L
V
S
D
G
F
--
K
P
G
T
K
F
G
V
G
T
---------------
P
T
Y
E
V
H
F
K
H
------------
G
M
T
H
-
T
D
A
T
D
----
K
N
A
E
Q
K
T
V
T
-----------
E
T
I
H
Y
V
D
E
N
N
Q
T
V
Q
P
D
S
T
T
A
V
T
F
K
R
G
Y
T
T
D
-------------
N
V
T
G
K
V
V
S
Y
D
P
--
W
T
V
D
G
N
Q
A
D
S
K
T
F
--
A
A
V
P
S
P
A
V
E
G
Y
T
P
N
H
Q
Q
I
N
E
F
T
V
T
P
D
S
K
D
--
I
V
K
T
V
V
---
Y
V
------
G
D
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
34.35
21%
45
- C2 -
1AER
1
TOXA_PSEAE
A:
[1-211]
-------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
L
G
D
--
G
G
D
V
S
F
S
T
R
G
T
Q
NWT
V
E
R
----
L
L
Q
A
H
R
Q
L
E
E
R
G
Y
V
F
V
--------
G
Y
H
G
T
F
L
E
A
A
----
Q
S
I
V
F
G
G
V
R
-----------
A
A
--
I
W
R
G
F
Y
I
A
G
--
D
P
A
L
A
Y
G
Y
A
Q
D
Q
E
P
D
ARG
R
I
R
N
G
A
L
L
R
V
Y
V
P
R
S
S
L
P
G
F
Y
R
T
S
L
T
L
A
A
P
E
A
A
G
E
V
--
E
R
L
-------
I
-
G
H
P
L
P
L
R
L
D
A
I
T
G
P
E
E
E
GG
R
L
E
T
I
L
G
W
P
L
A
------
E
R
T
V
V
I
P
S
A
I
P
T
D
PRN
V
G
G
D
L
---
D
P
S
S
I
P
D
K
E
Q
A
I
S
A
L
P
D
Y
A
S
Q
P
G
K
P
P
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.01
8%
-38
- C3 -
4G29
-
SSEI_SALTY
A:
[154-277]
----------------------------------------------------------------------------
A
A
A
Y
L
---
E
E
L
K
Q
N
P
I
I
N
N
K
I
M
N
P
V
G
Q
C
E
S
L
M
-
T
P
V
S
N
F
M
N
E
K
G
-
F
D
N
I
R
Y
R
G
I
F
I
W
D
K
----
P
T
E
E
I
P
T
N
H
F
A
V
V
G
N
K
E
--
G
K
D
Y
V
F
D
V
S
A
H
Q
---
F
E
N
----
R
G
M
S
N
L
N
G
P
L
I
L
S
A
D
---------
E
W
V
C
-
K
-----------
Y
R
M
A
--------------
K
L
I
Y
Y
T
D
F
S
N
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
31.12
32%
-67
- C3 -
4TU1
-
?
A:
[291-343]
-------------------------------------
Q
S
E
E
D
A
--
S
L
N
L
N
E
M
N
K
-
M
G
P
H
P
F
Q
L
--
S
F
S
Y
G
R
A
L
Q
A
S
C
L
K
A
W
---
K
G
V
P
E
N
K
A
K
A
Q
Q
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
30.34
20%
-151
- C5 -
3H6P
1
?
A:
[31-90]
-------------------------------------------------------------------------------------
A
F
A
A
K
A
G
L
M
R
H
T
I
G
Q
A
E
Q
Q
A
M
S
A
Q
A
F
H
Q
G
E
S
A
A
A
F
-
Q
-
G
A
H
A
R
F
V
A
A
A
A
K
----
V
N
T
L
L
D
I
A
Q
A
N
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.63
29%
-251
- C3 -
1Z65
-
PRND_MOUSE
A:
[5-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
T
W
W
V
A
I
L
C
M
L
L
A
-----
S
H
L
S
T
V
K
A
R
G
-------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
29.17
32%
-36
- C3 -
4D2J
1
?
A:
[277-329]
-------------------------------------
Q
S
E
E
D
A
--
S
L
N
L
N
E
M
N
K
-
M
G
P
H
P
F
Q
L
--
S
F
S
Y
G
R
A
L
Q
A
S
C
L
K
A
W
---
K
G
V
P
E
N
K
A
K
A
Q
Q
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
26.44
20%
-150
* C3 *
3S1B
-
?
A:
[1-34]
------------------------------------------------------------------------
F
N
K
E
C
L
L
R
Y
---
K
E
A
A
L
D
P
N
L
N
--
L
Y
Q
R
I
A
K
I
V
S
I
D
D
D
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
25.18
24%
-83
- C3 -
1IQ5
-
?
B:
[10-26]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
L
V
-----
K
A
M
G
H
R
K
R
F
G
N
P
F
----------------------------------------------------------------------------------------------------
14
HHSearch
24.72
18%
-36
* C4 *
2JZ2
-
?
A:
[19-54]
-----------------------------------------------------------------------------------------------------------------------------------
R
F
E
G
----
L
V
Q
R
V
S
D
G
K
A
A
V
L
F
E
N
G
N
W
D
K
L
V
T
F
R
L
S
E
L
E
---
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
21.59
25%
-169
- C3 -
2M1J
-
PRND_SHEEP
A:
[5-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
G
C
W
L
A
I
V
C
V
L
L
F
-----
S
Q
L
S
S
V
K
A
R
G
-------------------------------------------------------------------------------------------------------
11
HHSearch
21.44
24%
270
- C3 -
3TWE
1
?
A:
[10-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
-
D
L
Q
E
R
----
L
R
K
L
R
K
K
L
R
-----------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------